prot_H-elongata_contig20046.5646.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20046.5646.1
Unique Nameprot_H-elongata_contig20046.5646.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length306
Homology
[Close]
BLAST of mRNA_H-elongata_contig20046.5646.1 vs. uniprot
Match: D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.130e-9
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0 
Query:  260 RRSRGLIPESVIAKVPRLLVDMESALGYRVSLEEAKALCRELDQCGE 306
            R+  GLIPESVIAKVPRLL+D+E  +GYRV  ++AKA CRELD+CGE
Sbjct:   96 RQPCGLIPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGE 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20046.5646.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT08_ECTSI1.130e-970.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20046contigH-elongata_contig20046:2690..5292 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20046.5646.1mRNA_H-elongata_contig20046.5646.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20046 2690..5292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20046.5646.1 ID=prot_H-elongata_contig20046.5646.1|Name=mRNA_H-elongata_contig20046.5646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
GSRRRERRNASKFPDDVIGKVPCLCADLNAALGRNVGLQEVKDCVRLLDR
SGEGLHRQALLDGCMVREGGRRGRGRQIPDRDCHGKEQPSRRERGRGTCL
DRSSAGDGKRRTASGFSSSDGGVETEKVLASSADQTPAATITSAAGESAA
VKESTAPAHPKKRGRSSSSPEPFRQRPGGQSNAGNDGTGGSSCRENQVCG
VRDAVGVEATVAGTKKTGSSSSSCSAPSNMSAPRVEVMKTAATAIAALDA
RLGYGTLMPRRSRGLIPESVIAKVPRLLVDMESALGYRVSLEEAKALCRE
LDQCGE
back to top