mRNA_H-elongata_contig20046.5646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20046.5646.1
Unique NamemRNA_H-elongata_contig20046.5646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20046.5646.1 vs. uniprot
Match: D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.130e-9
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:  778 RRSRGLIPESVIAKVPRLLVDMESALGYRVSLEEAKALCRELDQCGE 918
            R+  GLIPESVIAKVPRLL+D+E  +GYRV  ++AKA CRELD+CGE
Sbjct:   96 RQPCGLIPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGE 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20046.5646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT08_ECTSI1.130e-970.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20046contigH-elongata_contig20046:2690..5292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size918
Cds size918
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20046.5646.1prot_H-elongata_contig20046.5646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20046 2690..5292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.8684385-CDS-H-elongata_contig20046:2689..27491622930128.8684385-CDS-H-elongata_contig20046:2689..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 2690..2749 +
1691679292.2135286-CDS-H-elongata_contig20046:2689..27491691679292.2135286-CDS-H-elongata_contig20046:2689..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 2690..2749 +
1622930128.8847346-CDS-H-elongata_contig20046:3139..31761622930128.8847346-CDS-H-elongata_contig20046:3139..3176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 3140..3176 +
1691679292.2216287-CDS-H-elongata_contig20046:3139..31761691679292.2216287-CDS-H-elongata_contig20046:3139..3176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 3140..3176 +
1622930128.9030144-CDS-H-elongata_contig20046:3404..35411622930128.9030144-CDS-H-elongata_contig20046:3404..3541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 3405..3541 +
1691679292.2295718-CDS-H-elongata_contig20046:3404..35411691679292.2295718-CDS-H-elongata_contig20046:3404..3541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 3405..3541 +
1622930128.9189436-CDS-H-elongata_contig20046:4251..48361622930128.9189436-CDS-H-elongata_contig20046:4251..4836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 4252..4836 +
1691679292.2374094-CDS-H-elongata_contig20046:4251..48361691679292.2374094-CDS-H-elongata_contig20046:4251..4836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 4252..4836 +
1622930128.935863-CDS-H-elongata_contig20046:5193..52921622930128.935863-CDS-H-elongata_contig20046:5193..5292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 5194..5292 +
1691679292.2450092-CDS-H-elongata_contig20046:5193..52921691679292.2450092-CDS-H-elongata_contig20046:5193..5292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20046 5194..5292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20046.5646.1

>prot_H-elongata_contig20046.5646.1 ID=prot_H-elongata_contig20046.5646.1|Name=mRNA_H-elongata_contig20046.5646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
GSRRRERRNASKFPDDVIGKVPCLCADLNAALGRNVGLQEVKDCVRLLDR
SGEGLHRQALLDGCMVREGGRRGRGRQIPDRDCHGKEQPSRRERGRGTCL
DRSSAGDGKRRTASGFSSSDGGVETEKVLASSADQTPAATITSAAGESAA
VKESTAPAHPKKRGRSSSSPEPFRQRPGGQSNAGNDGTGGSSCRENQVCG
VRDAVGVEATVAGTKKTGSSSSSCSAPSNMSAPRVEVMKTAATAIAALDA
RLGYGTLMPRRSRGLIPESVIAKVPRLLVDMESALGYRVSLEEAKALCRE
LDQCGE
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mRNA from alignment at H-elongata_contig20046:2690..5292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20046.5646.1 ID=mRNA_H-elongata_contig20046.5646.1|Name=mRNA_H-elongata_contig20046.5646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2603bp|location=Sequence derived from alignment at H-elongata_contig20046:2690..5292+ (Himanthalia elongata Himel1 dioecious)
GGGTCGAGGCGGAGAGAGAGACGGAACGCATCGAAATTTCCGGATGACGT
CATCGGAAAGGTACCAGCAAAGTGACGCCGGTTATATAATATTTTCTGTG
GTGTAAATATAATATGCCGAACGAACGAGTTACCGTACCAGGCTGTGAAA
GGAATGTTTAGTAGAGCCCTGTCTGCCTTAGATTAACTCAGGCAGAACAT
GTCCGGTAAATGCTAATAAATTACAGTAGAATATCACGTGCGCCTTGGCA
CGTTCGCGACGACCTGAATCGCTTGCCGAAAATTCACGCAGGTCCGGATG
GGTTAAAAAAAGGCGCCGATTATTCATGTGTCACCTATGTGTCGCGGCTG
TCGTTGCTGCGCTAGCGGGCATTCCGTGGGTCCCATCAGCTGTCATTTGC
ATAACCTCTTCCTCATCGTTGCGCGCGTGCGTTTCGTACACTCGCGGCAG
GTCCCATGCTTGTGCGCCGACCTCAACGCCGCCCTAGGTGAGAGCGCGCG
CGCGGTCTGACGAACCATCACGCGCGACGTTATCTTCCGGGAAATCAAAC
GCGAAACCGTGTTAAGCTACCAAGTAAAATGACGCAACCCCCCCCCTTCC
CCCGTCTCCAGCACGCGCTCCCGTTCCCGTTCTCCCCCCCCCCACCCCAC
ATCACTGCGCTCCAAATCGACCCACGCGACTTTCGACGTTTGTTTTTTAT
CCTCGCATGCCCCAGGGAGGAACGTCGGCCTTCAGGAAGTGAAAGATTGC
GTGAGGTTACTGGACAGAAGCGGAGAAGGCTTGCACAGGCAGGCACTGTT
GGACGGATGCATGGTAAGAGAGGGAGGGAGGCGGGGGAGAGGGAGACAAA
TCGTGGTTTCTTGATCCCACGCGCCGGCGAAGGGTTTCGGTATACATTAA
CATGATACTGCTGGTGACGCACCTCCCCCCCCCCTAATCTCTCTCTTTTT
TTTCATGCTTGCAGTCCCCCTCCAAGATAAAACTCCCCCTTGACGAAAAA
ATAAGTTACTCCGCTCCCTCCCCTTCTTCCCCCTCTTTTATTTCTCATGT
ATTTCATGAAACATTTTTTGACTCAAACTATCTTAACGTTGCTGAAAGGA
ACTCCTGCAAAAGGGGCCCGTCCGCGCGACCGAACATCACCCTTTACCTT
CGGCTGGAGAATTCCTCGCGGCCTCTAATGTCCGCGTACCCGTAATGGTG
AACACGGGAGACGCAGAACAAGAAAAAGAGGGCTCCAAAGGGCGGGGATA
CCATCGAGTGCGGGTGAGCTACATACTGGTTCTTCGTTTGTCATGGGGAG
TTGATATTGATACGTTTGCGGGGGGGTTGGGGGGGGTATCATACGTTTGA
GGCGTGTGTTTGCGGGGATAAGAGACGAGCGAGCGAGCGAGCCGCTGACG
TAGAAGAGGCAATTAAATATATGTTTCCTCCACCGTGAAAATCTTCCACT
ACTACCACACCACACCGCTCTTTGATTGCCGTTTTCCCGCCCGCTTCGCG
TAGTCACGTTTTTTTCTTCACTTAGTGTCTTTTCCTTTCCCCTCATATGT
ATATGATTACAGCCTGACAGAGACTGTCACGGGAAGGAGCAACCGTCTCG
CCGCGAGCGGGGCCGAGGCACCTGCCTCGACCGATCGAGTGCTGGCGATG
GGAAACGGCGAACTGCGTCGGGCTTCTCATCTTCTGACGGAGGTGTTGAG
ACCGAGAAGGTCCTGGCTTCTTCTGCTGATCAGACGCCGGCAGCAACGAT
TACGTCTGCGGCGGGAGAATCAGCGGCGGTGAAGGAGTCTACAGCGCCCG
CTCACCCCAAGAAGCGCGGGCGATCGTCATCCTCCCCTGAACCCTTCCGG
CAACGACCTGGTGGGCAGAGTAACGCCGGAAATGACGGCACCGGCGGTTC
GAGCTGCAGGGAAAATCAGGTCTGCGGCGTGAGAGACGCTGTTGGTGTTG
AAGCGACGGTGGCCGGAACGAAGAAAACGGGGTCAAGTTCGAGTTCTTGT
TCGGCGCCATCGAATATGAGCGCTCCGAGAGTCGAGGTGATGAAGACCGC
TGCCACCGCCATCGCCGCGCTCGATGCGAGGCTTGGTTACGGCACGCTCA
TGCCCAGGCGCTCGCGAGGGCTCATTCCTGAGAGCGTGATCGCGAAGGTG
TGGGGATAGCAGGACTGGTGGTAGCCGACATGGGTTCGGGTTCGGGAGTA
GTTCCTTTCCAACCATTTTGTTACGATCGATGGCGCAAATGTCGTGGTAT
AGTTTAGTCTTCCTGTTGTTCGGCTGGTAGGTAAGTCGATCGATCGATCC
CGTCAGTCAGTATCGTAGACCGTAGACCAGGGGTTGATGAGGGGTATGGG
GCCAAAAATCAACTAACACTTGAGCGTGAGTTACTGCCGTCCGCCCCGCT
GCTCTCTCTTCTCTCTCTCTCTCTCAAGCGAACGAAGAAGCCTCGGGAAA
ATAAACAAACGCCCCTGCCGCTGCCGCTGCCGCTGCCTCCACCACCGAGA
GCAGGTGCCCCGGTTGCTGGTTGACATGGAGAGCGCCCTTGGCTACCGAG
TTTCCTTGGAGGAAGCCAAGGCGCTCTGTCGGGAACTGGACCAATGCGGT
GAG
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Coding sequence (CDS) from alignment at H-elongata_contig20046:2690..5292+

>mRNA_H-elongata_contig20046.5646.1 ID=mRNA_H-elongata_contig20046.5646.1|Name=mRNA_H-elongata_contig20046.5646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig20046:2690..5292+ (Himanthalia elongata Himel1 dioecious)
GGGTCGAGGCGGAGAGAGAGACGGAACGCATCGAAATTTCCGGATGACGT
CATCGGAAAGGGGTCGAGGCGGAGAGAGAGACGGAACGCATCGAAATTTC
CGGATGACGTCATCGGAAAGGTCCCATGCTTGTGCGCCGACCTCAACGCC
GCCCTAGGTCCCATGCTTGTGCGCCGACCTCAACGCCGCCCTAGGGAGGA
ACGTCGGCCTTCAGGAAGTGAAAGATTGCGTGAGGTTACTGGACAGAAGC
GGAGAAGGCTTGCACAGGCAGGCACTGTTGGACGGATGCATGGTAAGAGA
GGGAGGGAGGCGGGGGAGAGGGAGACAAATCGGAGGAACGTCGGCCTTCA
GGAAGTGAAAGATTGCGTGAGGTTACTGGACAGAAGCGGAGAAGGCTTGC
ACAGGCAGGCACTGTTGGACGGATGCATGGTAAGAGAGGGAGGGAGGCGG
GGGAGAGGGAGACAAATCCCTGACAGAGACTGTCACGGGAAGGAGCAACC
GTCTCGCCGCGAGCGGGGCCGAGGCACCTGCCTCGACCGATCGAGTGCTG
GCGATGGGAAACGGCGAACTGCGTCGGGCTTCTCATCTTCTGACGGAGGT
GTTGAGACCGAGAAGGTCCTGGCTTCTTCTGCTGATCAGACGCCGGCAGC
AACGATTACGTCTGCGGCGGGAGAATCAGCGGCGGTGAAGGAGTCTACAG
CGCCCGCTCACCCCAAGAAGCGCGGGCGATCGTCATCCTCCCCTGAACCC
TTCCGGCAACGACCTGGTGGGCAGAGTAACGCCGGAAATGACGGCACCGG
CGGTTCGAGCTGCAGGGAAAATCAGGTCTGCGGCGTGAGAGACGCTGTTG
GTGTTGAAGCGACGGTGGCCGGAACGAAGAAAACGGGGTCAAGTTCGAGT
TCTTGTTCGGCGCCATCGAATATGAGCGCTCCGAGAGTCGAGGTGATGAA
GACCGCTGCCACCGCCATCGCCGCGCTCGATGCGAGGCTTGGTTACGGCA
CGCTCATGCCCAGGCGCTCGCGAGGGCTCATTCCTGAGAGCGTGATCGCG
AAGCCTGACAGAGACTGTCACGGGAAGGAGCAACCGTCTCGCCGCGAGCG
GGGCCGAGGCACCTGCCTCGACCGATCGAGTGCTGGCGATGGGAAACGGC
GAACTGCGTCGGGCTTCTCATCTTCTGACGGAGGTGTTGAGACCGAGAAG
GTCCTGGCTTCTTCTGCTGATCAGACGCCGGCAGCAACGATTACGTCTGC
GGCGGGAGAATCAGCGGCGGTGAAGGAGTCTACAGCGCCCGCTCACCCCA
AGAAGCGCGGGCGATCGTCATCCTCCCCTGAACCCTTCCGGCAACGACCT
GGTGGGCAGAGTAACGCCGGAAATGACGGCACCGGCGGTTCGAGCTGCAG
GGAAAATCAGGTCTGCGGCGTGAGAGACGCTGTTGGTGTTGAAGCGACGG
TGGCCGGAACGAAGAAAACGGGGTCAAGTTCGAGTTCTTGTTCGGCGCCA
TCGAATATGAGCGCTCCGAGAGTCGAGGTGATGAAGACCGCTGCCACCGC
CATCGCCGCGCTCGATGCGAGGCTTGGTTACGGCACGCTCATGCCCAGGC
GCTCGCGAGGGCTCATTCCTGAGAGCGTGATCGCGAAGGTGCCCCGGTTG
CTGGTTGACATGGAGAGCGCCCTTGGCTACCGAGTTTCCTTGGAGGAAGC
CAAGGCGCTCTGTCGGGAACTGGACCAATGCGGTGAGGTGCCCCGGTTGC
TGGTTGACATGGAGAGCGCCCTTGGCTACCGAGTTTCCTTGGAGGAAGCC
AAGGCGCTCTGTCGGGAACTGGACCAATGCGGTGAG
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