prot_H-elongata_contig199786.5620.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig199786.5620.1
Unique Nameprot_H-elongata_contig199786.5620.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: Q2TUG4_9PHAE (Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUG4_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.430e-78
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 
Query:    1 MSRPTINRWFKCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKKNVI 125
            MSRPTIN+WFK +GKK+SRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRL+RNKLDLEGLSGRKTSRSKYGTKKNVI
Sbjct:    1 MSRPTINQWFKRQGKKISRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLSGRKTSRSKYGTKKNVI 125
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A7U1G3H6_9PHAE (Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A7U1G3H6_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.340e-70
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 0 
Query:    1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP IN+WF K  GKK ++VKSVGLRGCPQKRGVCLKVF+ SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK
Sbjct:    1 MSRPNINQWFNKSHGKKQTKVKSVGLRGCPQKRGVCLKVFICSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: D0IPT7_SACAN (Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=2870 RepID=D0IPT7_SACAN)

HSP 1 Score: 214 bits (546), Expect = 5.450e-70
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0 
Query:    1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP IN+WF K +GKK +R KSVGLRGCPQKRGVCLKVFV SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGL GRKTSRSKYGTKK
Sbjct:    1 MSRPNINQWFNKSQGKKQTRAKSVGLRGCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A4D6E517_9PHAE (Ribosomal protein S12 n=10 Tax=Laminariales TaxID=2886 RepID=A0A4D6E517_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.150e-69
Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 0 
Query:    1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP  N+WF K +GKK ++VKSVGLRGCPQKRG+CLKVFV SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGL GRKTSRSKYGTKK
Sbjct:    1 MSRPNTNQWFNKSQGKKQTKVKSVGLRGCPQKRGICLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A8E8PDL4_9PHAE (Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDL4_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.340e-68
Identity = 101/123 (82.11%), Postives = 118/123 (95.93%), Query Frame = 0 
Query:    1 MSRPTINRW-FKCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP +N+W +KC+G+++S+ +SVGLRGCPQKRGVCLKVF+ SP+KPNSARRKV+K+RLSNKVRLTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYR IRNKLDL+GL+GRKTSRSKYGTKK
Sbjct:    1 MSRPNLNQWAYKCQGERLSKPRSVGLRGCPQKRGVCLKVFICSPRKPNSARRKVIKVRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRCIRNKLDLDGLAGRKTSRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A343C617_FUCDI (Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 RepID=A0A343C617_FUCDI)

HSP 1 Score: 209 bits (533), Expect = 5.230e-68
Identity = 99/123 (80.49%), Postives = 117/123 (95.12%), Query Frame = 0 
Query:    1 MSRPTINRWFK-CRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP I++W K C+GKK++++KSVGL+GCPQK+GVCL++F+ SPKKPNSARRKVVK+RLSNK+RLTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRL+RNK DL+GLSGRKT RSKYGTKK
Sbjct:    1 MSRPNISQWVKRCQGKKITKIKSVGLKGCPQKKGVCLRIFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A8F0FDA5_9PHAE (Ribosomal protein S12 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDA5_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.830e-67
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 0 
Query:    1 MSRPTINRWFK-CRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP IN+W K C+ KK ++ KSVGLRGCPQK+GVCLKVFV SPKKPNSARRKVVK+RLSNKVRLTAYIPGQ HRLQEHSQVLVRGGR+PDLPGVKYRL+RNKLDLEGL GRKT+RSKYGTKK
Sbjct:    1 MSRPNINQWLKRCQDKKRTKPKSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKVRLTAYIPGQTHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLLGRKTARSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A8F0K0B9_9PHAE (Ribosomal protein S12 n=1 Tax=Ecklonia radicosa TaxID=2041055 RepID=A0A8F0K0B9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.750e-66
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 0 
Query:    1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP IN+WF K +GKK ++VKSVGL  CPQKRGVCLKVFV SPKKPNSARRKVVK+RLSN+V+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGL  RKTSRSKYGTKK
Sbjct:    1 MSRPNINQWFNKIQGKKQTKVKSVGLHRCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNQVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPDRKTSRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A3G5FPN2_9PHAE (Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPN2_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.130e-66
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 0 
Query:    1 MSRPTINRWFKCRG-KKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP IN+WFK +  K++++ KSVGL+GCPQKRGVCLKVFV SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGL  RKTSRSKYGTKK
Sbjct:    1 MSRPNINQWFKNKKTKRLTKSKSVGLKGCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLPDRKTSRSKYGTKK 123
[Close]
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A1L2F1H2_9PHAE (Ribosomal protein S12 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H2_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.490e-66
Identity = 100/123 (81.30%), Postives = 114/123 (92.68%), Query Frame = 0 
Query:    1 MSRPTINRWFK-CRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 122
            MSRP I +W K C+G K+++ +SVGLRGCPQK+GVCLKVFV SPKKPNSARRKVVK+RL+N++RLTAYIPGQIHRLQEHSQVLVRGGR+PDLPGVKYRL+RNK DLEGL GRKT+RSKYGTKK
Sbjct:    1 MSRPNITQWVKKCQGNKITKKRSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLANRIRLTAYIPGQIHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLEGLGGRKTARSKYGTKK 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUG4_9PHAE1.430e-7894.40Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31... [more]
A0A7U1G3H6_9PHAE1.340e-7088.62Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2... [more]
D0IPT7_SACAN5.450e-7088.62Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=... [more]
A0A4D6E517_9PHAE3.150e-6986.99Ribosomal protein S12 n=10 Tax=Laminariales TaxID=... [more]
A0A8E8PDL4_9PHAE3.340e-6882.11Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A343C617_FUCDI5.230e-6880.49Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A8F0FDA5_9PHAE2.830e-6785.37Ribosomal protein S12 n=1 Tax=Analipus japonicus T... [more]
A0A8F0K0B9_9PHAE1.750e-6685.37Ribosomal protein S12 n=1 Tax=Ecklonia radicosa Ta... [more]
A0A3G5FPN2_9PHAE2.130e-6685.37Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2... [more]
A0A1L2F1H2_9PHAE2.490e-6681.30Ribosomal protein S12 n=1 Tax=Coccophora langsdorf... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 121..125
NoneNo IPR availableGENE3D2.40.50.140coord: 1..124
e-value: 1.1E-47
score: 163.0
NoneNo IPR availablePANTHERPTHR11652:SF128S RIBOSOMAL PROTEIN S12, MITOCHONDRIALcoord: 10..121
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 78..95
score: 79.55
coord: 95..111
score: 39.3
coord: 111..123
score: 60.58
coord: 43..58
score: 74.05
coord: 28..43
score: 54.95
coord: 59..78
score: 54.31
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 15..123
e-value: 1.9E-32
score: 111.2
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 3..124
e-value: 1.4E-49
score: 164.7
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 10..121
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 44..51
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 4..123
e-value: 4.5E-48
score: 160.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 11..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199786contigH-elongata_contig199786:285..662 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199786.5620.1mRNA_H-elongata_contig199786.5620.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig199786 2..662 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig199786.5620.1 ID=prot_H-elongata_contig199786.5620.1|Name=mRNA_H-elongata_contig199786.5620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MSRPTINRWFKCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSAR
RKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIR
NKLDLEGLSGRKTSRSKYGTKKNVI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR005679Ribosomal_S12_bac
IPR012340NA-bd_OB-fold