mRNA_H-elongata_contig199786.5620.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: Q2TUG4_9PHAE (Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUG4_9PHAE) HSP 1 Score: 237 bits (604), Expect = 2.820e-77 Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 1
Query: 1 MSRPTINRWFKCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKKNVI 375
MSRPTIN+WFK +GKK+SRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRL+RNKLDLEGLSGRKTSRSKYGTKKNVI
Sbjct: 1 MSRPTINQWFKRQGKKISRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLSGRKTSRSKYGTKKNVI 125
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A7U1G3H6_9PHAE (Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A7U1G3H6_9PHAE) HSP 1 Score: 217 bits (552), Expect = 2.520e-69 Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP IN+WF K GKK ++VKSVGLRGCPQKRGVCLKVF+ SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK
Sbjct: 1 MSRPNINQWFNKSHGKKQTKVKSVGLRGCPQKRGVCLKVFICSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: D0IPT7_SACAN (Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=2870 RepID=D0IPT7_SACAN) HSP 1 Score: 215 bits (548), Expect = 1.020e-68 Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 1
Query: 1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP IN+WF K +GKK +R KSVGLRGCPQKRGVCLKVFV SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGL GRKTSRSKYGTKK
Sbjct: 1 MSRPNINQWFNKSQGKKQTRAKSVGLRGCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A4D6E517_9PHAE (Ribosomal protein S12 n=10 Tax=Laminariales TaxID=2886 RepID=A0A4D6E517_9PHAE) HSP 1 Score: 213 bits (543), Expect = 5.880e-68 Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 1
Query: 1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP N+WF K +GKK ++VKSVGLRGCPQKRG+CLKVFV SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGL GRKTSRSKYGTKK
Sbjct: 1 MSRPNTNQWFNKSQGKKQTKVKSVGLRGCPQKRGICLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A8E8PDL4_9PHAE (Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDL4_9PHAE) HSP 1 Score: 211 bits (536), Expect = 6.180e-67 Identity = 101/123 (82.11%), Postives = 118/123 (95.93%), Query Frame = 1
Query: 1 MSRPTINRW-FKCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP +N+W +KC+G+++S+ +SVGLRGCPQKRGVCLKVF+ SP+KPNSARRKV+K+RLSNKVRLTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYR IRNKLDL+GL+GRKTSRSKYGTKK
Sbjct: 1 MSRPNLNQWAYKCQGERLSKPRSVGLRGCPQKRGVCLKVFICSPRKPNSARRKVIKVRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRCIRNKLDLDGLAGRKTSRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A343C617_FUCDI (Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 RepID=A0A343C617_FUCDI) HSP 1 Score: 210 bits (535), Expect = 9.670e-67 Identity = 99/123 (80.49%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MSRPTINRWFK-CRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP I++W K C+GKK++++KSVGL+GCPQK+GVCL++F+ SPKKPNSARRKVVK+RLSNK+RLTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRL+RNK DL+GLSGRKT RSKYGTKK
Sbjct: 1 MSRPNISQWVKRCQGKKITKIKSVGLKGCPQKKGVCLRIFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A8F0FDA5_9PHAE (Ribosomal protein S12 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDA5_9PHAE) HSP 1 Score: 208 bits (530), Expect = 5.210e-66 Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 MSRPTINRWFK-CRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP IN+W K C+ KK ++ KSVGLRGCPQK+GVCLKVFV SPKKPNSARRKVVK+RLSNKVRLTAYIPGQ HRLQEHSQVLVRGGR+PDLPGVKYRL+RNKLDLEGL GRKT+RSKYGTKK
Sbjct: 1 MSRPNINQWLKRCQDKKRTKPKSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKVRLTAYIPGQTHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLLGRKTARSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A8F0K0B9_9PHAE (Ribosomal protein S12 n=1 Tax=Ecklonia radicosa TaxID=2041055 RepID=A0A8F0K0B9_9PHAE) HSP 1 Score: 206 bits (525), Expect = 3.200e-65 Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 MSRPTINRWF-KCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP IN+WF K +GKK ++VKSVGL CPQKRGVCLKVFV SPKKPNSARRKVVK+RLSN+V+LTAYIPGQ+HRLQEHSQVLVRGGR+PDLPGVKYRLIRNKLDLEGL RKTSRSKYGTKK
Sbjct: 1 MSRPNINQWFNKIQGKKQTKVKSVGLHRCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNQVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPDRKTSRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A3G5FPN2_9PHAE (Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPN2_9PHAE) HSP 1 Score: 206 bits (525), Expect = 3.890e-65 Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 1 MSRPTINRWFKCRG-KKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP IN+WFK + K++++ KSVGL+GCPQKRGVCLKVFV SPKKPNSARRKVVK+RLSNKV+LTAYIPGQ+HRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGL RKTSRSKYGTKK
Sbjct: 1 MSRPNINQWFKNKKTKRLTKSKSVGLKGCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLPDRKTSRSKYGTKK 123
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Match: A0A1L2F1H2_9PHAE (Ribosomal protein S12 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H2_9PHAE) HSP 1 Score: 206 bits (524), Expect = 4.540e-65 Identity = 100/123 (81.30%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 MSRPTINRWFK-CRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQIHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 366
MSRP I +W K C+G K+++ +SVGLRGCPQK+GVCLKVFV SPKKPNSARRKVVK+RL+N++RLTAYIPGQIHRLQEHSQVLVRGGR+PDLPGVKYRL+RNK DLEGL GRKT+RSKYGTKK
Sbjct: 1 MSRPNITQWVKKCQGNKITKKRSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLANRIRLTAYIPGQIHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLEGLGGRKTARSKYGTKK 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199786.5620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199786.5620.1 >prot_H-elongata_contig199786.5620.1 ID=prot_H-elongata_contig199786.5620.1|Name=mRNA_H-elongata_contig199786.5620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp MSRPTINRWFKCRGKKVSRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARback to top mRNA from alignment at H-elongata_contig199786:2..662- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199786.5620.1 ID=mRNA_H-elongata_contig199786.5620.1|Name=mRNA_H-elongata_contig199786.5620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=661bp|location=Sequence derived from alignment at H-elongata_contig199786:2..662- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199786:2..662- >mRNA_H-elongata_contig199786.5620.1 ID=mRNA_H-elongata_contig199786.5620.1|Name=mRNA_H-elongata_contig199786.5620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig199786:2..662- (Himanthalia elongata Himel1 dioecious)back to top |