mRNA_H-elongata_contig199750.5618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199750.5618.1
Unique NamemRNA_H-elongata_contig199750.5618.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199750.5618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199750contigH-elongata_contig199750:103..1016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.0067723-CDS-H-elongata_contig199750:102..2371622930126.0067723-CDS-H-elongata_contig199750:102..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199750 103..237 -
1691679290.940692-CDS-H-elongata_contig199750:102..2371691679290.940692-CDS-H-elongata_contig199750:102..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199750 103..237 -
1622930126.0187478-CDS-H-elongata_contig199750:962..10161622930126.0187478-CDS-H-elongata_contig199750:962..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199750 963..1016 -
1691679290.9483826-CDS-H-elongata_contig199750:962..10161691679290.9483826-CDS-H-elongata_contig199750:962..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199750 963..1016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199750.5618.1prot_H-elongata_contig199750.5618.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199750 103..1016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199750.5618.1

>prot_H-elongata_contig199750.5618.1 ID=prot_H-elongata_contig199750.5618.1|Name=mRNA_H-elongata_contig199750.5618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
TEVEVILAKKNNEAKELKAERDSHRLKSEELQEALEASQGREEATSAKLA
ETLENLEVPLST*
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mRNA from alignment at H-elongata_contig199750:103..1016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199750.5618.1 ID=mRNA_H-elongata_contig199750.5618.1|Name=mRNA_H-elongata_contig199750.5618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=914bp|location=Sequence derived from alignment at H-elongata_contig199750:103..1016- (Himanthalia elongata Himel1 dioecious)
ACCGAAGTGGAGGTTATTCTGGCCAAGAAGAATAATGAGGCGAAGGAGCT
CAAGGTGAATTAATTGGCTGACGGGGGGGGGGAGGGCCGGGGGGGAGACA
TAGAAGCTGGCATGCGCAATGTGACTGGCCGGGTAGTTTATTCCTTTGGT
GATTGATTGGAGGCGCTCTAAAAAAGCGAGATACATCCTGTAGACGCACA
CATGTACTGTAAATCTTTAGCTTTCATCGACGGCAGCACTCAAACAATGT
AATTATTGGGCGAATCTTTCATATCTTTGTTTATTATAATGATTACTAAT
GCCTTATTTCGTGTTTATTATTATTATTATTATTATTAATGATAATATTA
TTACCTTTATTTAGAGTAAATAATAATAAACACTAAATAAAGGCAATAAT
AATAATCACTAATTATTTGTCATGGGAGTTGCAATTGCTGATTATTGTGA
CTACACAGTCACAATTTAGTTTGTGACTACGGGGACATGTAAGGGGTCAT
CCCCGGGGTTTCCGCCATCAAATTAAGGTTCTCAGAGCCCAAGGGTAGGT
GTGTGTGGGTTAGGGTCAGGGGGCGGGTTGGGTCAGTCAGTATATATAGG
TTTTTAAGAAACGGCTATTTTACTCTGCATGAAATTAACATTTTTTAACG
TTTTTTGCAGTTTTTTCCTGTAGTCAAAAACTAAGTTGTGACTACGTAGT
CACAGTTATCACTCCCCCGATTGAATTCGGTTTGATCCGACCGCTCTATA
TTTAATTGGTTCGTTCCTCCCAACCACAGGCAGAGCGCGATTCGCACAGG
TTGAAGAGCGAGGAGCTCCAGGAGGCGCTGGAGGCGTCTCAAGGGCGGGA
GGAGGCAACCTCAGCCAAACTGGCTGAAACGCTGGAAAACCTTGAGGTGC
CTCTGTCGACTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig199750:103..1016-

>mRNA_H-elongata_contig199750.5618.1 ID=mRNA_H-elongata_contig199750.5618.1|Name=mRNA_H-elongata_contig199750.5618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig199750:103..1016- (Himanthalia elongata Himel1 dioecious)
ACCGAAGTGGAGGTTATTCTGGCCAAGAAGAATAATGAGGCGAAGGAGCT
CAAGACCGAAGTGGAGGTTATTCTGGCCAAGAAGAATAATGAGGCGAAGG
AGCTCAAGGCAGAGCGCGATTCGCACAGGTTGAAGAGCGAGGAGCTCCAG
GAGGCGCTGGAGGCGTCTCAAGGGCGGGAGGAGGCAACCTCAGCCAAACT
GGCTGAAACGCTGGAAAACCTTGAGGTGCCTCTGTCGACTTGAGCAGAGC
GCGATTCGCACAGGTTGAAGAGCGAGGAGCTCCAGGAGGCGCTGGAGGCG
TCTCAAGGGCGGGAGGAGGCAACCTCAGCCAAACTGGCTGAAACGCTGGA
AAACCTTGAGGTGCCTCTGTCGACTTGA
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