prot_H-elongata_contig198941.5582.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig198941.5582.1
Unique Nameprot_H-elongata_contig198941.5582.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length244
Homology
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 1.060e-100
Identity = 148/244 (60.66%), Postives = 188/244 (77.05%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            M    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHY  TED L D+GTKH +KHR  +L
Sbjct:  185 MSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHL 428          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 2.780e-98
Identity = 148/244 (60.66%), Postives = 190/244 (77.87%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            M    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR+M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+   + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHYV TED L D+GTKH +KHR ++L
Sbjct:  406 MSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 649          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 6.440e-96
Identity = 148/244 (60.66%), Postives = 190/244 (77.87%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            M    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHYV+TED L D+GTKH + HR ++L
Sbjct:  745 MSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHL 988          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 8.260e-91
Identity = 144/244 (59.02%), Postives = 187/244 (76.64%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            M SC P  T G GPELS+ QP+E LLN E K+RYQAI G+VMYL QVTRYDI+   +Q AR MS P+K H+GAAKHLLRYL+GS DFSITYK+G F L A S AN G+  ++G+S SSYI+M+  AP S K GLQ LTA  T+EAELVA+ALAMKE +FC+NM+ E+ F   F S PL+ID+T+ L+V GN+T+S   KH+ALR+ +++++V+E +ISIHY+ TED L D+GT++L+K RH+ L
Sbjct:  526 MGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYL 769          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 8.290e-91
Identity = 145/244 (59.43%), Postives = 188/244 (77.05%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            +    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ ++ NAP+SF+ GLQGLTA  TMEAELVA+ALAM EAVF SNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHYV TED L D+GTKH +KHR ++L
Sbjct: 1414 ISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 3.840e-88
Identity = 137/240 (57.08%), Postives = 179/240 (74.58%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 240
            M +C P  TPG+GP  S  QP+E LLN+EE RRYQ I G ++YL Q+ RYDI+ A +QLAR M+KP+K H+GAAK   RYL G+  F I YK+G F+L AF+++NWGN P++G+STSS++ M+ +AP++FK GLQ LT Q TME ELVAAALA+KEAVFCSN++ E+ F +    VPLY DNT+ LH  GNR+YS   KHIALR+ F++ELV E +I+IHYV  +    D+GTKHL+K R
Sbjct:  468 MSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDR 707          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 1.720e-85
Identity = 125/203 (61.58%), Postives = 157/203 (77.34%), Query Frame = 0
Query:   42 MYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            MY+ QV RYDI+ A   LAR M+KP+K H   AK  LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHY  TED L  +GTKH +KHR ++L
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHL 203          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 5.710e-83
Identity = 141/244 (57.79%), Postives = 177/244 (72.54%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 244
            M S  P  T G GPELS                  AI G+V+YL Q+TRYDI+   +QLAR MS P+K H+GAAKHLLRYL+GS DFSITYK+G F L A S+ANWGN P++ +S SSYI+M+  AP+SFK GLQ LTA  T+EAELVAAALAMKE +FC+NM+ E+ F   F S PLYI NT+ LHV GN+T+S R KH+ALR+ +++E+V+E +ISIHY+ TED L D+GTKHL+K RH+ L
Sbjct:  457 MGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCL 681          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 8.320e-71
Identity = 107/168 (63.69%), Postives = 135/168 (80.36%), Query Frame = 0
Query:   37 ITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALR 204
            I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.120e-67
Identity = 119/220 (54.09%), Postives = 149/220 (67.73%), Query Frame = 0
Query:    1 MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIH 220
            M+ C P   P +G ELS  QP E +LN+E+ +                        +QLAR MSK AKAH+GAAKHLLR   G+ DF ITYK+G F+L AFS+ANW + P++ RSTSSY++M+  AP+SFK GLQ LT   TMEAEL+AAAL MKEAVFCSNM+ E+ F + FG VPLYI+NT+ LHV GN+ YS R KHIAL +  V+ELV+E  I+IH
Sbjct:  308 MEECKPTSIPSVGSELSTEQPTETVLNKEKTQ------------------------SQLARVMSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.060e-10060.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE2.780e-9860.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE6.440e-9660.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE8.260e-9159.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE8.290e-9159.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE3.840e-8857.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE1.720e-8561.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE5.710e-8357.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNV2_9PHAE8.320e-7163.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N1_9PHAE1.120e-6754.09Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 26..221
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 26..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198941contigH-elongata_contig198941:379..1110 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198941.5582.1mRNA_H-elongata_contig198941.5582.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig198941 16..1110 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig198941.5582.1 ID=prot_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRY
DILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAA
FSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAA
ALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKH
IALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like