mRNA_H-elongata_contig198941.5582.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198941.5582.1
Unique NamemRNA_H-elongata_contig198941.5582.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 4.760e-143
Identity = 202/365 (55.34%), Postives = 268/365 (73.42%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
            VMK+ KSLYGL QSP NWF T+D  +  IGF  LKSDPCVY+Y++    +  TLYV D+L        ++ +K +L   F+M+++G+ S +LGM +  DRE  T+TIS + Y + +++R+GM    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHY  TED L D+GTKH +KHR  +L
Sbjct:   64 VMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHL 428          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 4.640e-136
Identity = 202/365 (55.34%), Postives = 269/365 (73.70%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
            VMK+ KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y++    +  TLYV D+L        ++ +K +L   F+M+++G+ S +L M +  DRE  T+TIS + Y + +++R+GM    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHYV+TED L D+GTKH + HR ++L
Sbjct:  624 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHL 988          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 1.010e-135
Identity = 203/378 (53.70%), Postives = 267/378 (70.63%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKK-------------QLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
            VMK+ KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y++    +  TLYV D+L        +  L               +L   F+M+++G+ S  LGM +  DRE  T+TIS + Y + +++R+GM    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR+M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA  TMEAELVA+ALAMKEAVFCSNM+ E+   + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHYV TED L D+GTKH +KHR ++L
Sbjct:  272 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 649          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 1.710e-129
Identity = 200/365 (54.79%), Postives = 268/365 (73.42%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
            VMK+ KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y++    +  TLYV D+L        ++ +K +L   F+M+++G+ S +LGM +  DRE  T+TIS + Y + +++R+G+    P  TPG G E+S  QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A  QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ ++ NAP+SF+ GLQGLTA  TMEAELVA+ALAM EAVF SNM+ E+ F + F  +P+Y DNT+ LH  GNR++S R KHIALR+ F++ELV E KISIHYV TED L D+GTKH +KHR ++L
Sbjct: 1293 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.440e-118
Identity = 185/361 (51.25%), Postives = 247/361 (68.42%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
            VM ++KSLY L QSP NWF T+D  L  IGF PLK DPCVY Y+++   +  TL V D+L    +   L+                  S I GM +  DRE+GT++IS + Y++ ++ R+GM +C P  TPG+GP  S  QP+E LLN+EE RRYQ I G ++YL Q+ RYDI+ A +QLAR M+KP+K H+GAAK   RYL G+  F I YK+G F+L AF+++NWGN P++G+STSS++ M+ +AP++FK GLQ LT Q TME ELVAAALA+KEAVFCSN++ E+ F +    VPLY DNT+ LH  GNR+YS   KHIALR+ F++ELV E +I+IHYV  +    D+GTKHL+K R
Sbjct:  363 VMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDGSQMYLTLSVDDLLLAGNNSDALSI----------------ASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDR 707          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 7.360e-113
Identity = 184/365 (50.41%), Postives = 242/365 (66.30%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
            VMK++KSL GL QSP++W  T+D  L  IGF PLKSD CVYIY++    V+ TLYV D+L +                                       +G       +YT  ++ R+GM SC P  T G GPELS+ QP+E LLN E K+RYQAI G+VMYL QVTRYDI+   +Q AR MS P+K H+GAAKHLLRYL+GS DFSITYK+G F L A S AN G+  ++G+S SSYI+M+  AP S K GLQ LTA  T+EAELVA+ALAMKE +FC+NM+ E+ F   F S PL+ID+T+ L+V GN+T+S   KH+ALR+ +++++V+E +ISIHY+ TED L D+GT++L+K RH+ L
Sbjct:  444 VMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLII---------------------------------------RGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYL 769          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 4.860e-107
Identity = 165/361 (45.71%), Postives = 249/361 (68.98%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
            V K+++SLYGL QSP  W  T+D  L V G++  +SDPCVY+Y      VI T+YV DIL     + L+++ KK+L D FEM++MG++ RILG+ V  D E+GT+ IS + Y   +++R+GM+  NP  TPG G E+S NQP++++L   EK+ YQ++TG+++YL Q TR+D+  A  QL++  S PA+ ++ AAKH+LRYL G+    I YK+G FRLAAF+++++G  P++GRST+ Y+  +    IS+    Q LTAQ T+EAE+ A + + +EAV+ SN + E++F ++FGSVP+  D+T AL VAGN  +S R  ++ALR  F++ELV   +I++H+  +E QL D+ TK+L KHR
Sbjct:    2 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 360          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 8.980e-107
Identity = 165/361 (45.71%), Postives = 251/361 (69.53%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
            V K+++SLYGL QSP  W  T+D  L V G++  +SDPCVY+Y +    VI T+YV DIL     + L+++ KK+L D FEM++MG++ RILG++V  D E+GT+ IS + Y    ++R+GM+  NP  T G G E+S NQP++++L   +K+ YQ++TG+++YL Q T++D+  A  QL++  S PA+ ++ AAKH+LRYL G+    I YK+G FRLAAF+++++G  P++GRST+ Y+  +    IS+    Q LTAQ T+EAE+ A + + +EAV+ SN + E++F ++FGSVP+  D+T AL VAGN  +S R KH+ALRY F++ELV   +I++H+  +E QL D+ TK+L KHR
Sbjct:  121 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 480          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 2.710e-105
Identity = 167/361 (46.26%), Postives = 245/361 (67.87%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
            V K++KSLYGL QSP  W   ++  L + G++  +SDPCVYI+ +     I  +YV DIL    +K ++++ KK+L+D FEM++MG++ R++G+ V  D E GT+ IS   Y  D++QRYGM+  NP  TPG G ELS  QP+++LL  E+K+R+QAITG+++YL Q TRYD+  AV+QL R  + PA+ H+ AAKHLLRYL G+ D  I YK+G FRL+ F+++++G  P++GRST+ Y+  +    IS+    Q L AQ T+EAEL A + + +EAV+ SN + EI F ++F SVP+  D+T AL VA N  +S R KHIALR+ F++EL +  +I++H+  +   L D+ TKHL K R
Sbjct:  362 VYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQR 721          
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 3.370e-105
Identity = 165/361 (45.71%), Postives = 252/361 (69.81%), Query Frame = 1
Query:    1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
            V K+++SLYGL QS   W  T+D  L V+G++  +SDPCVY+Y +    VI T+YV DIL     + L+++ KK+L D FEM++MG++ RILG++V  D E+GT+ IS + Y   +++R+GM+  NP  TPG G E+S NQP++++L   +K+ YQ++ G+++YL Q TR+D+  A  QL++  S PA+ ++ AAKH+LRYL G+    I YK+G FRLAAF+++++G  P++GRST+ Y+  +    IS+    Q LTAQ T+EAE+ A + + +EAV+ SN + E++F ++FGSVP+  D+T AL VAGN  +S R KH+ALRY F++ELV   +I++H+  +E QL D+ TK+L KHR
Sbjct:  329 VYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 688          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE4.760e-14355.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE4.640e-13655.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.010e-13553.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.710e-12954.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE1.440e-11851.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE7.360e-11350.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KUJ3_9PHAE4.860e-10745.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE8.980e-10745.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE2.710e-10546.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE3.370e-10545.71Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198941contigH-elongata_contig198941:16..1110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score146.0
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog37727.XP_002147152.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,3SBAR@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1095
Cds size732
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.200983-UTR-H-elongata_contig198941:15..3781622930123.200983-UTR-H-elongata_contig198941:15..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198941 16..378 +
1691679289.8145466-UTR-H-elongata_contig198941:15..3781691679289.8145466-UTR-H-elongata_contig198941:15..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198941 16..378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.218478-CDS-H-elongata_contig198941:378..11101622930123.218478-CDS-H-elongata_contig198941:378..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198941 379..1110 +
1691679289.8258276-CDS-H-elongata_contig198941:378..11101691679289.8258276-CDS-H-elongata_contig198941:378..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198941 379..1110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198941.5582.1prot_H-elongata_contig198941.5582.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198941 379..1110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198941.5582.1

>prot_H-elongata_contig198941.5582.1 ID=prot_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRY
DILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAA
FSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAA
ALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKH
IALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL
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mRNA from alignment at H-elongata_contig198941:16..1110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198941.5582.1 ID=mRNA_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-elongata_contig198941:16..1110+ (Himanthalia elongata Himel1 dioecious)
GTCATGAAGATCAAGAAGAGCTTGTACGGTCTCCGACAGAGCCCAAAGAA CTGGTTCGGCACGATGGACGTGGAGCTCGCCGTTATCGGTTTTCGCCCGC TCAAGTCGGATCCCTGCGTGTACATCTACGAGAACGAGACTGGCTTCGTT ATCCGGACGCTCTACGTGGGCGACATCTTGTTCCTTAGCACCAGCAAGAC TTTGCTCAACAAGCTCAAGAAGCAGCTGATTGACTGGTTCGAGATGTCCA ACATGGGCGACATGTCGAGAATCCTCGGCATGAACGTCACCCACGACCGT GAGAAGGGGACTATCACCATTAGTTAGAAGGATTATACGGAGGACGTGGT GCAGCGCTACGGTATGAAAAGCTGCAACCCCGCGTACACCCCCGGAATAG GGCCGGAGCTGTCTCTAAACCAGCCGAAGGAGAAACTGCTGAACGAGGAG GAGAAGCGGCGCTACCAGGCAATCACTGGAGCCGTGATGTACCTTGTACA GGTCACCCGCTACGACATTCTCAACGCGGTCAATCAGCTAGCAAGGACCA TGTCCAAGCCCGCGAAAGCTCACGTGGGGGCGGCCAAGCACCTGCTTCGC TACTTGACCGGATCCGCAGACTTCTCTATCACCTACAAGCAAGGCAGTTT TAGGCTTGCTGCCTTCTCAGAAGCCAACTGGGGCAACACACCGAACGACG GCAGATCTACGTCATCGTACATCGTGATGGTGGTCAACGCCCCGATCAGC TTCAAAGTGGGACTGCAAGGGCTGACCGCACAGTTCACGATGGAAGCAGA GCTCGTGGCGGCAGCTCTGGCAATGAAGGAGGCGGTGTTCTGCTCCAACA TGATTCTGGAGATTAGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTAC ATCGACAACACGTCGGCACTGCACGTCGCCGGCAACCGCACCTACAGTCC TCGTGCAAAGCACATCGCGCTGAGGTATGTTTTCGTGCAAGAGCTGGTAG AGGAGGACAAGATCAGCATCCACTACGTCAAGACCGAGGATCAGCTGGTG GACTTGGGCACCAAGCACCTTAGCAAGCACCGTCATCGCAACCTC
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Coding sequence (CDS) from alignment at H-elongata_contig198941:16..1110+

>mRNA_H-elongata_contig198941.5582.1 ID=mRNA_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig198941:16..1110+ (Himanthalia elongata Himel1 dioecious)
ATGAAAAGCTGCAACCCCGCGTACACCCCCGGAATAGGGCCGGAGCTGTC
TCTAAACCAGCCGAAGGAGAAACTGCTGAACGAGGAGGAGAAGCGGCGCT
ACCAGGCAATCACTGGAGCCGTGATGTACCTTGTACAGGTCACCCGCTAC
GACATTCTCAACGCGGTCAATCAGCTAGCAAGGACCATGTCCAAGCCCGC
GAAAGCTCACGTGGGGGCGGCCAAGCACCTGCTTCGCTACTTGACCGGAT
CCGCAGACTTCTCTATCACCTACAAGCAAGGCAGTTTTAGGCTTGCTGCC
TTCTCAGAAGCCAACTGGGGCAACACACCGAACGACGGCAGATCTACGTC
ATCGTACATCGTGATGGTGGTCAACGCCCCGATCAGCTTCAAAGTGGGAC
TGCAAGGGCTGACCGCACAGTTCACGATGGAAGCAGAGCTCGTGGCGGCA
GCTCTGGCAATGAAGGAGGCGGTGTTCTGCTCCAACATGATTCTGGAGAT
TAGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTACATCGACAACACGT
CGGCACTGCACGTCGCCGGCAACCGCACCTACAGTCCTCGTGCAAAGCAC
ATCGCGCTGAGGTATGTTTTCGTGCAAGAGCTGGTAGAGGAGGACAAGAT
CAGCATCCACTACGTCAAGACCGAGGATCAGCTGGTGGACTTGGGCACCA
AGCACCTTAGCAAGCACCGTCATCGCAACCTCATGAAAAGCTGCAACCCC
GCGTACACCCCCGGAATAGGGCCGGAGCTGTCTCTAAACCAGCCGAAGGA
GAAACTGCTGAACGAGGAGGAGAAGCGGCGCTACCAGGCAATCACTGGAG
CCGTGATGTACCTTGTACAGGTCACCCGCTACGACATTCTCAACGCGGTC
AATCAGCTAGCAAGGACCATGTCCAAGCCCGCGAAAGCTCACGTGGGGGC
GGCCAAGCACCTGCTTCGCTACTTGACCGGATCCGCAGACTTCTCTATCA
CCTACAAGCAAGGCAGTTTTAGGCTTGCTGCCTTCTCAGAAGCCAACTGG
GGCAACACACCGAACGACGGCAGATCTACGTCATCGTACATCGTGATGGT
GGTCAACGCCCCGATCAGCTTCAAAGTGGGACTGCAAGGGCTGACCGCAC
AGTTCACGATGGAAGCAGAGCTCGTGGCGGCAGCTCTGGCAATGAAGGAG
GCGGTGTTCTGCTCCAACATGATTCTGGAGATTAGCTTCGATGAGAGCTT
CGGCAGCGTGCCGCTGTACATCGACAACACGTCGGCACTGCACGTCGCCG
GCAACCGCACCTACAGTCCTCGTGCAAAGCACATCGCGCTGAGGTATGTT
TTCGTGCAAGAGCTGGTAGAGGAGGACAAGATCAGCATCCACTACGTCAA
GACCGAGGATCAGCTGGTGGACTTGGGCACCAAGCACCTTAGCAAGCACC
GTCATCGCAACCTC
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