mRNA_H-elongata_contig198941.5582.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 422 bits (1084), Expect = 4.760e-143 Identity = 202/365 (55.34%), Postives = 268/365 (73.42%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
VMK+ KSLYGL QSP NWF T+D + IGF LKSDPCVY+Y++ + TLYV D+L ++ +K +L F+M+++G+ S +LGM + DRE T+TIS + Y + +++R+GM P TPG G E+S QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA TMEAELVA+ALAMKEAVFCSNM+ E+ F + F +P+Y DNT+ LH GNR++S R KHIALR+ F++ELV E KISIHY TED L D+GTKH +KHR +L
Sbjct: 64 VMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHL 428
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 421 bits (1083), Expect = 4.640e-136 Identity = 202/365 (55.34%), Postives = 269/365 (73.70%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
VMK+ KSLYGL QSP NWF T+D L IGF LKSDPCVY+Y++ + TLYV D+L ++ +K +L F+M+++G+ S +L M + DRE T+TIS + Y + +++R+GM P TPG G E+S QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA TMEAELVA+ALAMKEAVFCSNM+ E+ F + F +P+Y DNT+ LH GNR++S R KHIALR+ F++ELV E KISIHYV+TED L D+GTKH + HR ++L
Sbjct: 624 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHL 988
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 1.010e-135 Identity = 203/378 (53.70%), Postives = 267/378 (70.63%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKK-------------QLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
VMK+ KSLYGL QSP NWF T+D L IGF LKSDPCVY+Y++ + TLYV D+L + L +L F+M+++G+ S LGM + DRE T+TIS + Y + +++R+GM P TPG G E+S QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A QLAR+M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ M+ NAP+SF+ GLQGLTA TMEAELVA+ALAMKEAVFCSNM+ E+ + F +P+Y DNT+ LH GNR++S R KHIALR+ F++ELV E KISIHYV TED L D+GTKH +KHR ++L
Sbjct: 272 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 649
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 416 bits (1069), Expect = 1.710e-129 Identity = 200/365 (54.79%), Postives = 268/365 (73.42%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
VMK+ KSLYGL QSP NWF T+D L IGF LKSDPCVY+Y++ + TLYV D+L ++ +K +L F+M+++G+ S +LGM + DRE T+TIS + Y + +++R+G+ P TPG G E+S QP++ LL+E+E R+YQ I G++MY+ QV RYDI+ A QLAR M+KP+K H+ AAKH LRYL G+ DFSITYK+G F+LA FS++NW N P++G+STSSY+ ++ NAP+SF+ GLQGLTA TMEAELVA+ALAM EAVF SNM+ E+ F + F +P+Y DNT+ LH GNR++S R KHIALR+ F++ELV E KISIHYV TED L D+GTKH +KHR ++L
Sbjct: 1293 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 369 bits (947), Expect = 1.440e-118 Identity = 185/361 (51.25%), Postives = 247/361 (68.42%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
VM ++KSLY L QSP NWF T+D L IGF PLK DPCVY Y+++ + TL V D+L + L+ S I GM + DRE+GT++IS + Y++ ++ R+GM +C P TPG+GP S QP+E LLN+EE RRYQ I G ++YL Q+ RYDI+ A +QLAR M+KP+K H+GAAK RYL G+ F I YK+G F+L AF+++NWGN P++G+STSS++ M+ +AP++FK GLQ LT Q TME ELVAAALA+KEAVFCSN++ E+ F + VPLY DNT+ LH GNR+YS KHIALR+ F++ELV E +I+IHYV + D+GTKHL+K R
Sbjct: 363 VMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDGSQMYLTLSVDDLLLAGNNSDALSI----------------ASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDR 707
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 355 bits (911), Expect = 7.360e-113 Identity = 184/365 (50.41%), Postives = 242/365 (66.30%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHRHRNL 1095
VMK++KSL GL QSP++W T+D L IGF PLKSD CVYIY++ V+ TLYV D+L + +G +YT ++ R+GM SC P T G GPELS+ QP+E LLN E K+RYQAI G+VMYL QVTRYDI+ +Q AR MS P+K H+GAAKHLLRYL+GS DFSITYK+G F L A S AN G+ ++G+S SSYI+M+ AP S K GLQ LTA T+EAELVA+ALAMKE +FC+NM+ E+ F F S PL+ID+T+ L+V GN+T+S KH+ALR+ +++++V+E +ISIHY+ TED L D+GT++L+K RH+ L
Sbjct: 444 VMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLII---------------------------------------RGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYL 769
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE) HSP 1 Score: 327 bits (839), Expect = 4.860e-107 Identity = 165/361 (45.71%), Postives = 249/361 (68.98%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
V K+++SLYGL QSP W T+D L V G++ +SDPCVY+Y VI T+YV DIL + L+++ KK+L D FEM++MG++ RILG+ V D E+GT+ IS + Y +++R+GM+ NP TPG G E+S NQP++++L EK+ YQ++TG+++YL Q TR+D+ A QL++ S PA+ ++ AAKH+LRYL G+ I YK+G FRLAAF+++++G P++GRST+ Y+ + IS+ Q LTAQ T+EAE+ A + + +EAV+ SN + E++F ++FGSVP+ D+T AL VAGN +S R ++ALR F++ELV +I++H+ +E QL D+ TK+L KHR
Sbjct: 2 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 360
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 331 bits (848), Expect = 8.980e-107 Identity = 165/361 (45.71%), Postives = 251/361 (69.53%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
V K+++SLYGL QSP W T+D L V G++ +SDPCVY+Y + VI T+YV DIL + L+++ KK+L D FEM++MG++ RILG++V D E+GT+ IS + Y ++R+GM+ NP T G G E+S NQP++++L +K+ YQ++TG+++YL Q T++D+ A QL++ S PA+ ++ AAKH+LRYL G+ I YK+G FRLAAF+++++G P++GRST+ Y+ + IS+ Q LTAQ T+EAE+ A + + +EAV+ SN + E++F ++FGSVP+ D+T AL VAGN +S R KH+ALRY F++ELV +I++H+ +E QL D+ TK+L KHR
Sbjct: 121 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 480
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 334 bits (857), Expect = 2.710e-105 Identity = 167/361 (46.26%), Postives = 245/361 (67.87%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
V K++KSLYGL QSP W ++ L + G++ +SDPCVYI+ + I +YV DIL +K ++++ KK+L+D FEM++MG++ R++G+ V D E GT+ IS Y D++QRYGM+ NP TPG G ELS QP+++LL E+K+R+QAITG+++YL Q TRYD+ AV+QL R + PA+ H+ AAKHLLRYL G+ D I YK+G FRL+ F+++++G P++GRST+ Y+ + IS+ Q L AQ T+EAEL A + + +EAV+ SN + EI F ++F SVP+ D+T AL VA N +S R KHIALR+ F++EL + +I++H+ + L D+ TKHL K R
Sbjct: 362 VYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQR 721
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 333 bits (854), Expect = 3.370e-105 Identity = 165/361 (45.71%), Postives = 252/361 (69.81%), Query Frame = 1
Query: 1 VMKIKKSLYGLRQSPKNWFGTMDVELAVIGFRPLKSDPCVYIYENETGFVIRTLYVGDILFLSTSKTLLNKLKKQLIDWFEMSNMGDMSRILGMNVTHDREKGTITIS*KDYTEDVVQRYGMKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYDILNAVNQLARTMSKPAKAHVGAAKHLLRYLTGSADFSITYKQGSFRLAAFSEANWGNTPNDGRSTSSYIVMVVNAPISFKVGLQGLTAQFTMEAELVAAALAMKEAVFCSNMILEISFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHIALRYVFVQELVEEDKISIHYVKTEDQLVDLGTKHLSKHR 1083
V K+++SLYGL QS W T+D L V+G++ +SDPCVY+Y + VI T+YV DIL + L+++ KK+L D FEM++MG++ RILG++V D E+GT+ IS + Y +++R+GM+ NP TPG G E+S NQP++++L +K+ YQ++ G+++YL Q TR+D+ A QL++ S PA+ ++ AAKH+LRYL G+ I YK+G FRLAAF+++++G P++GRST+ Y+ + IS+ Q LTAQ T+EAE+ A + + +EAV+ SN + E++F ++FGSVP+ D+T AL VAGN +S R KH+ALRY F++ELV +I++H+ +E QL D+ TK+L KHR
Sbjct: 329 VYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 688 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198941.5582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198941.5582.1 >prot_H-elongata_contig198941.5582.1 ID=prot_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp MKSCNPAYTPGIGPELSLNQPKEKLLNEEEKRRYQAITGAVMYLVQVTRYback to top mRNA from alignment at H-elongata_contig198941:16..1110+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198941.5582.1 ID=mRNA_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-elongata_contig198941:16..1110+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198941:16..1110+ >mRNA_H-elongata_contig198941.5582.1 ID=mRNA_H-elongata_contig198941.5582.1|Name=mRNA_H-elongata_contig198941.5582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig198941:16..1110+ (Himanthalia elongata Himel1 dioecious)back to top |