mRNA_H-elongata_contig198335.5557.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198335.5557.1
Unique NamemRNA_H-elongata_contig198335.5557.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198335.5557.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-8
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 NILTKSLKSLENRHLIKTVKSITSKSKKFYMLYELS 108
            N +TK+LKSLE RHL+KT KS+TSKSKK YMLYEL+
Sbjct:  117 NTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELT 152
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BLAST of mRNA_H-elongata_contig198335.5557.1 vs. uniprot
Match: A0A1Z5K9T1_FISSO (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T1_FISSO)

HSP 1 Score: 50.1 bits (118), Expect = 5.640e-6
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 NILTKSLKSLENRHLIKTVKSITSKSKKFYMLYEL 105
            N LTK LK+LE+R LIK VKS+T+KSKK YMLYEL
Sbjct:  159 NALTKILKTLESRRLIKPVKSVTAKSKKLYMLYEL 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198335.5557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT94_ECTSI3.450e-875.00DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A1Z5K9T1_FISSO5.640e-674.29DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198335contigH-elongata_contig198335:1010..1120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.487664-CDS-H-elongata_contig198335:1009..11201622930120.487664-CDS-H-elongata_contig198335:1009..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198335 1010..1120 +
1691679288.5477247-CDS-H-elongata_contig198335:1009..11201691679288.5477247-CDS-H-elongata_contig198335:1009..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198335 1010..1120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198335.5557.1prot_H-elongata_contig198335.5557.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198335 1010..1120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198335.5557.1

>prot_H-elongata_contig198335.5557.1 ID=prot_H-elongata_contig198335.5557.1|Name=mRNA_H-elongata_contig198335.5557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
NILTKSLKSLENRHLIKTVKSITSKSKKFYMLYELS*
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mRNA from alignment at H-elongata_contig198335:1010..1120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198335.5557.1 ID=mRNA_H-elongata_contig198335.5557.1|Name=mRNA_H-elongata_contig198335.5557.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig198335:1010..1120+ (Himanthalia elongata Himel1 dioecious)
AACATACTGACCAAGAGCCTCAAGTCCTTGGAGAATCGGCACCTCATCAA
GACCGTCAAATCCATCACCAGCAAGAGCAAGAAGTTCTACATGCTCTACG
AGCTGAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig198335:1010..1120+

>mRNA_H-elongata_contig198335.5557.1 ID=mRNA_H-elongata_contig198335.5557.1|Name=mRNA_H-elongata_contig198335.5557.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig198335:1010..1120+ (Himanthalia elongata Himel1 dioecious)
AACATACTGACCAAGAGCCTCAAGTCCTTGGAGAATCGGCACCTCATCAA
GACCGTCAAATCCATCACCAGCAAGAGCAAGAAGTTCTACATGCTCTACG
AGCTGAGTTGAAACATACTGACCAAGAGCCTCAAGTCCTTGGAGAATCGG
CACCTCATCAAGACCGTCAAATCCATCACCAGCAAGAGCAAGAAGTTCTA
CATGCTCTACGAGCTGAGTTGA
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