prot_H-elongata_contig198335.5557.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig198335.5557.1
Unique Nameprot_H-elongata_contig198335.5557.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length37
Homology
[Close]
BLAST of mRNA_H-elongata_contig198335.5557.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-8
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 
Query:    1 NILTKSLKSLENRHLIKTVKSITSKSKKFYMLYELS 36
            N +TK+LKSLE RHL+KT KS+TSKSKK YMLYEL+
Sbjct:  117 NTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELT 152
[Close]
BLAST of mRNA_H-elongata_contig198335.5557.1 vs. uniprot
Match: A0A1Z5K9T1_FISSO (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T1_FISSO)

HSP 1 Score: 50.1 bits (118), Expect = 5.640e-6
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:    1 NILTKSLKSLENRHLIKTVKSITSKSKKFYMLYEL 35
            N LTK LK+LE+R LIK VKS+T+KSKK YMLYEL
Sbjct:  159 NALTKILKTLESRRLIKPVKSVTAKSKKLYMLYEL 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198335.5557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT94_ECTSI3.450e-875.00DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A1Z5K9T1_FISSO5.640e-674.29DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..34
e-value: 7.1E-12
score: 47.1
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 2..35
e-value: 2.4E-8
score: 33.8
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198335contigH-elongata_contig198335:1010..1120 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198335.5557.1mRNA_H-elongata_contig198335.5557.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig198335 1010..1120 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig198335.5557.1 ID=prot_H-elongata_contig198335.5557.1|Name=mRNA_H-elongata_contig198335.5557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
NILTKSLKSLENRHLIKTVKSITSKSKKFYMLYELS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34
IPR036390WH_DNA-bd_sf