mRNA_H-elongata_contig197413.5508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig197413.5508.1
Unique Name	mRNA_H-elongata_contig197413.5508.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: D7FIU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.250e-8
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQ 108
            RLG FLF RI R+GHDSRF  VRD+P++FLVF+ VQ
Sbjct:  131 RLGTFLFARIRRDGHDSRFNGVRDRPLKFLVFWFVQ 166

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BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A4W4HSW1_ELEEL (Uncharacterized LOC113576424 n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HSW1_ELEEL)

HSP 1 Score: 51.2 bits (121), Expect = 2.020e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLGMFLF+RIL++G DSRF +VRD P  F VF+ +Q +
Sbjct:   71 RLGMFLFRRILKDGQDSRFSNVRDSPGTFFVFWTLQAV 108

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A4U5UNU6_COLLU (Uncharacterized protein n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5UNU6_COLLU)

HSP 1 Score: 50.1 bits (118), Expect = 4.920e-6
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ +Q M
Sbjct:   71 RLGTFLFMRILKDGHDRRFNNVRDSPGTFFVYWTIQAM 108

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: UPI000901E60A (uncharacterized protein LOC104919903 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=UPI000901E60A)

HSP 1 Score: 50.1 bits (118), Expect = 5.270e-6
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ +Q M
Sbjct:   71 RLGTFLFMRILKDGHDRRFNNVRDSPGTFFVYWTIQAM 108

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A6G0IMZ0_LARCR (S5A_REDUCTASE domain-containing protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IMZ0_LARCR)

HSP 1 Score: 50.1 bits (118), Expect = 5.410e-6
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ +Q M
Sbjct:  103 RLGTFLFMRILKDGHDRRFNNVRDSPGTFFVYWTIQAM 140

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A437D8N4_ORYJA (S5A_REDUCTASE domain-containing protein n=8 Tax=Oryzias TaxID=8089 RepID=A0A437D8N4_ORYJA)

HSP 1 Score: 50.1 bits (118), Expect = 5.550e-6
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ VQ M
Sbjct:   88 RLGTFLFLRILKDGHDRRFNNVRDSPGTFFVYWTVQAM 125

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A3B5K4Z8_TAKRU (S5A_REDUCTASE domain-containing protein n=6 Tax=Tetraodontidae TaxID=31031 RepID=A0A3B5K4Z8_TAKRU)

HSP 1 Score: 49.7 bits (117), Expect = 7.630e-6
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ VQ M
Sbjct:   88 RLGTFLFFRILKDGHDRRFNNVRDSPGTFFVYWTVQAM 125

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A2N6NXU3_BEABA (S5A_REDUCTASE domain-containing protein n=5 Tax=Cordycipitaceae TaxID=474943 RepID=A0A2N6NXU3_BEABA)

HSP 1 Score: 49.7 bits (117), Expect = 8.130e-6
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG +LF R+L +GHDSRF ++RD+P+RF   F +Q +
Sbjct:  136 RLGSYLFSRVLGHGHDSRFDEIRDKPVRFASVFLIQAI 173

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A6A5F8V8_PERFL (S5A_REDUCTASE domain-containing protein n=28 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6A5F8V8_PERFL)

HSP 1 Score: 49.3 bits (116), Expect = 1.010e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ VQ +
Sbjct:   71 RLGTFLFMRILKDGHDRRFNNVRDSPGTFFVYWTVQAL 108

[Close]

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Match: A0A667Y9T5_9TELE (Uncharacterized LOC115362246 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Y9T5_9TELE)

HSP 1 Score: 49.3 bits (116), Expect = 1.050e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1

Query:    1 RLGMFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM 114
            RLG FLF RIL++GHD RF +VRD P  F V++ +Q +
Sbjct:   88 RLGTFLFMRILKDGHDRRFNNVRDSPGTFFVYWSIQAV 125

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot

BLAST of mRNA_H-elongata_contig197413.5508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FIU2_ECTSI	6.250e-8	69.44	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A4W4HSW1_ELEEL	2.020e-6	60.53	Uncharacterized LOC113576424 n=2 Tax=Electrophorus...	[more]
A0A4U5UNU6_COLLU	4.920e-6	57.89	Uncharacterized protein n=1 Tax=Collichthys lucidu...	[more]
UPI000901E60A	5.270e-6	57.89	uncharacterized protein LOC104919903 n=2 Tax=Perco...	[more]
A0A6G0IMZ0_LARCR	5.410e-6	57.89	S5A_REDUCTASE domain-containing protein n=1 Tax=La...	[more]
A0A437D8N4_ORYJA	5.550e-6	60.53	S5A_REDUCTASE domain-containing protein n=8 Tax=Or...	[more]
A0A3B5K4Z8_TAKRU	7.630e-6	60.53	S5A_REDUCTASE domain-containing protein n=6 Tax=Te...	[more]
A0A2N6NXU3_BEABA	8.130e-6	52.63	S5A_REDUCTASE domain-containing protein n=5 Tax=Co...	[more]
A0A6A5F8V8_PERFL	1.010e-5	57.89	S5A_REDUCTASE domain-containing protein n=28 Tax=P...	[more]
A0A667Y9T5_9TELE	1.050e-5	55.26	Uncharacterized LOC115362246 n=1 Tax=Myripristis m...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig197413	contig	H-elongata_contig197413:961..1074 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	114
Cds size	105
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930116.2581317-CDS-H-elongata_contig197413:960..1065	1622930116.2581317-CDS-H-elongata_contig197413:960..1065	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig197413 961..1065 -
1691679286.7569652-CDS-H-elongata_contig197413:960..1065	1691679286.7569652-CDS-H-elongata_contig197413:960..1065	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig197413 961..1065 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930116.2762723-UTR-H-elongata_contig197413:1065..1074	1622930116.2762723-UTR-H-elongata_contig197413:1065..1074	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig197413 1066..1074 -
1691679286.7671733-UTR-H-elongata_contig197413:1065..1074	1691679286.7671733-UTR-H-elongata_contig197413:1065..1074	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig197413 1066..1074 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig197413.5508.1	prot_H-elongata_contig197413.5508.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig197413 961..1065 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig197413:961..1074-
coding sequence from alignment at H-elongata_contig197413:961..1074-

protein sequence of mRNA_H-elongata_contig197413.5508.1

>prot_H-elongata_contig197413.5508.1 ID=prot_H-elongata_contig197413.5508.1|Name=mRNA_H-elongata_contig197413.5508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
MFLFKRILRNGHDSRFKDVRDQPIRFLVFFGVQVM

mRNA from alignment at H-elongata_contig197413:961..1074-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig197413.5508.1 ID=mRNA_H-elongata_contig197413.5508.1|Name=mRNA_H-elongata_contig197413.5508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig197413:961..1074- (Himanthalia elongata Himel1 dioecious)
AGGTTAGGTATGTTCCTCTTCAAGCGAATACTCCGAAACGGGCATGACTC
GAGGTTCAAGGACGTGAGGGACCAGCCCATCAGGTTTCTTGTTTTCTTCG
GCGTGCAGGTGATG

Coding sequence (CDS) from alignment at H-elongata_contig197413:961..1074-

>mRNA_H-elongata_contig197413.5508.1 ID=mRNA_H-elongata_contig197413.5508.1|Name=mRNA_H-elongata_contig197413.5508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig197413:961..1074- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTCTTCAAGCGAATACTCCGAAACGGGCATGACTCGAGGTTCAA
GGACGTGAGGGACCAGCCCATCAGGTTTCTTGTTTTCTTCGGCGTGCAGG
TGATGATGTTCCTCTTCAAGCGAATACTCCGAAACGGGCATGACTCGAGG
TTCAAGGACGTGAGGGACCAGCCCATCAGGTTTCTTGTTTTCTTCGGCGT
GCAGGTGATG