mRNA_H-elongata_contig106711.550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106711.550.1
Unique NamemRNA_H-elongata_contig106711.550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106711.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106711contigH-elongata_contig106711:1171..1539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.1565833-UTR-H-elongata_contig106711:1170..11731622929597.1565833-UTR-H-elongata_contig106711:1170..1173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106711 1171..1173 +
1691679085.0073345-UTR-H-elongata_contig106711:1170..11731691679085.0073345-UTR-H-elongata_contig106711:1170..1173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106711 1171..1173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.170778-CDS-H-elongata_contig106711:1173..15391622929597.170778-CDS-H-elongata_contig106711:1173..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106711 1174..1539 +
1691679085.0172226-CDS-H-elongata_contig106711:1173..15391691679085.0172226-CDS-H-elongata_contig106711:1173..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106711 1174..1539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106711.550.1prot_H-elongata_contig106711.550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106711 1174..1539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106711.550.1

>prot_H-elongata_contig106711.550.1 ID=prot_H-elongata_contig106711.550.1|Name=mRNA_H-elongata_contig106711.550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MVQAGQPQLAKPQLTHLQPAKAHTIQARAALAHATRAAQIQIAHAQAAQF
QAVQFQTATSQVAQAQAQAQAQAQTHASLVEKVQVQAAQAHAAQMAQAQA
QAQSHAQLQRQAQAQASFESS*
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mRNA from alignment at H-elongata_contig106711:1171..1539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106711.550.1 ID=mRNA_H-elongata_contig106711.550.1|Name=mRNA_H-elongata_contig106711.550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig106711:1171..1539+ (Himanthalia elongata Himel1 dioecious)
GTCATGGTTCAAGCCGGCCAGCCACAACTTGCCAAGCCACAACTCACTCA
CCTACAACCTGCTAAGGCTCATACGATTCAGGCTCGAGCTGCTTTGGCAC
ACGCGACTCGGGCTGCTCAGATTCAAATAGCTCATGCTCAGGCCGCCCAG
TTCCAGGCTGTGCAGTTTCAGACCGCTACGTCTCAGGTTGCTCAGGCTCA
GGCTCAGGCCCAAGCTCAGGCCCAAACTCATGCCTCCCTTGTAGAAAAGG
TTCAGGTACAAGCTGCTCAGGCACATGCGGCCCAGATGGCCCAAGCGCAG
GCGCAGGCTCAATCTCATGCTCAGCTTCAACGTCAGGCTCAGGCTCAGGC
GAGTTTTGAGAGTAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106711:1171..1539+

>mRNA_H-elongata_contig106711.550.1 ID=mRNA_H-elongata_contig106711.550.1|Name=mRNA_H-elongata_contig106711.550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig106711:1171..1539+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCAAGCCGGCCAGCCACAACTTGCCAAGCCACAACTCACTCACCT
ACAACCTGCTAAGGCTCATACGATTCAGGCTCGAGCTGCTTTGGCACACG
CGACTCGGGCTGCTCAGATTCAAATAGCTCATGCTCAGGCCGCCCAGTTC
CAGGCTGTGCAGTTTCAGACCGCTACGTCTCAGGTTGCTCAGGCTCAGGC
TCAGGCCCAAGCTCAGGCCCAAACTCATGCCTCCCTTGTAGAAAAGGTTC
AGGTACAAGCTGCTCAGGCACATGCGGCCCAGATGGCCCAAGCGCAGGCG
CAGGCTCAATCTCATGCTCAGCTTCAACGTCAGGCTCAGGCTCAGGCGAG
TTTTGAGAGTAGTTGAATGGTTCAAGCCGGCCAGCCACAACTTGCCAAGC
CACAACTCACTCACCTACAACCTGCTAAGGCTCATACGATTCAGGCTCGA
GCTGCTTTGGCACACGCGACTCGGGCTGCTCAGATTCAAATAGCTCATGC
TCAGGCCGCCCAGTTCCAGGCTGTGCAGTTTCAGACCGCTACGTCTCAGG
TTGCTCAGGCTCAGGCTCAGGCCCAAGCTCAGGCCCAAACTCATGCCTCC
CTTGTAGAAAAGGTTCAGGTACAAGCTGCTCAGGCACATGCGGCCCAGAT
GGCCCAAGCGCAGGCGCAGGCTCAATCTCATGCTCAGCTTCAACGTCAGG
CTCAGGCTCAGGCGAGTTTTGAGAGTAGTTGA
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