mRNA_H-elongata_contig19646.5479.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: D8LRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI6_ECTSI) HSP 1 Score: 293 bits (750), Expect = 3.670e-94 Identity = 147/236 (62.29%), Postives = 175/236 (74.15%), Query Frame = 1
Query: 223 EGGDSDGWEDVRVFYT------EEATFTADVKGSPPTRSG-FGPWVWLSTLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEYQQK---GRSGPFLWDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
EG D+ G D+ T E A+ T D+ G P +S FGPWVWLS +WG+YA WL++SP++ KA TSGVL L GDMAAQ FE+QQK GR GPFL + RR+ A+ IDS++ITGP LHA+YGL+E IPT GGF PAA+HV +DTFV DP+FVASFFC TGMLESRPL+ ILPALRREFW AVQ SW VS F P+Q+ +FRYL +EFRVLSVN D+ WTS MSYFSHK
Sbjct: 135 EGDDAKGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 370
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A6H5JK43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK43_9PHAE) HSP 1 Score: 285 bits (729), Expect = 6.920e-91 Identity = 139/214 (64.95%), Postives = 167/214 (78.04%), Query Frame = 1
Query: 271 EEATFTADVKGSPPTRSG-FGPWVWLSTLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEYQQK---GRSGPFLWDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
E A+ T ++ G +S FGPWVWLS +WG+YA WL++SP++ KA TSGVL L GDMAAQ FE+QQK GR GPFL +TRR+ A+ IDS++ITGP LHA+YGL+E IPT+ GGF PAA+HV +DTFV DP+FVASFFC TGMLESR L+ ILPALRREFW AVQ SW VS F P+Q+ +FRYL +EFRVLSVN D+ WTS MSYFSHK
Sbjct: 157 EGASPTVEMSGGASKKSARFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRSLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 370
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A7S3XMM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMM5_HETAK) HSP 1 Score: 187 bits (475), Expect = 5.370e-55 Identity = 99/206 (48.06%), Postives = 135/206 (65.53%), Query Frame = 1
Query: 298 KGSPPTRSGFGPWVWLSTLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEY-QQKGRSG----PFLWDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
+G P + F P ++L L Y+ LK +P+LTKA ++ +A GD A Q +E+ ++ G F+ D RR LA+++D + ITGP+LH Y L+E+ +PT GG PA +HVA DTF+LDP+FV +FF TTG+ E RPL D LP LRREF A++ SW VS PVQ+ SFRY+ V +RVL VN ID+ WT+ MS+FSHK
Sbjct: 5 QGGGPMATFFMPALFLLQL---YSSMLKNAPMLTKALSAAGIAASGDFATQIWEHWRETSNQGILVDKFILDRRRQLAVMMDGIFITGPILHLAYELLEHLVPTEGGGALPAVLHVAADTFLLDPLFVCTFFLTTGLFERRPLWADTLPRLRREFPAALRGSWSVSAVCLPVQFASFRYVPVRYRVLLVNCIDLAWTATMSFFSHK 207
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A836CPL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL7_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.160e-42 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 1
Query: 541 TGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
TGP LH +YGL+E IPT+ GG PAA+HV LDTF+ DPVFV +FF TT + E + +K +++P L RE+W AV SWGVS FWP+Q+ FRYL ++ RVLS+N+ D+ WT+ +S+FSHK
Sbjct: 1 TGPGLHYLYGLLESHIPTTAGGLIPAALHVLLDTFLFDPVFVGTFFLTTALFEGKSMKREVVPQLEREYWPAVVGSWGVSVLFWPLQWACFRYLPLQLRVLSINVCDVAWTAVLSFFSHK 120
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A6U1B1H0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B1H0_9STRA) HSP 1 Score: 140 bits (352), Expect = 4.100e-36 Identity = 78/205 (38.05%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 292 DVKGSPPTRSGFGPWVWLSTLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEYQQKGRSGPFLWDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHKHE 906
+ G P R G GP L G Y L +PI TKA ++G + +GDM AQ E ++ G PF D R A +D +++TGP LH Y L+E IP+ G + + + +D + DP+ +A+FFCTT ++E + D++ LR ++W +GVSF P+Q++SFRY+ V+ RVL VNL D+ WTS +S SH +
Sbjct: 52 EAAGEGPHRRG-GP----QELLGWYLALLSSAPIRTKAVSTGCIECLGDMIAQTAEARRTGL--PF--DRVRSFACFVDGLLVTGPSLHYGYALLERVIPSVGGPVWATLIQITVDELIFDPIDIATFFCTTSLIERK----DLVQRLRNDYWSTFWGGFGVSFACTPIQFISFRYMPVKTRVLVVNLCDLAWTSVVSVLSHAQD 243
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A1Z5JHC7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHC7_FISSO) HSP 1 Score: 139 bits (349), Expect = 2.570e-35 Identity = 77/208 (37.02%), Postives = 118/208 (56.73%), Query Frame = 1
Query: 343 LSTLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEYQQKGRSGPFLWDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHKHETGEEAAAKTPRDSSLADGVL 966
L L Y +WL P+LTK+ TS V+ VGD AQ +E+ ++ RR LA +++ ++ +GPL+H Y L E+ +P F A +HV LD+ +LD VFV S F TG+LE K + +R+ ++ SW S F PV+ + FRYL V +RVL+VN++D++W + +S+ SHK G+E + T + SL +L
Sbjct: 83 LGALLQTYTLWLTTQPLLTKSITSAVMGCVGDAVAQRWEHHP-------IYSKRRGLAAMVEGLLWSGPLMHRAYSLFEHILPVGNNMGF-ALIHVLLDSLLLDSVFVTSAFWITGLLEGFSFK-QLRQQYQRDIGGTLKASWLTSLFLLPVEVVCFRYLPVTYRVLAVNVLDIVWDTVISFMSHKTR-GKELTSTTTDELSLQSPIL 280
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A7S4AQV4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AQV4_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.640e-30 Identity = 77/215 (35.81%), Postives = 117/215 (54.42%), Query Frame = 1
Query: 346 STLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEYQQKGRSGP------------------------FL---WDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGG---FFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
S++ Y L +SP+ TK T+ ++A+VGD AQ E ++K S P FL +D RR L+ + ++M+I+GPLLH Y LME FIPT+ GG F A H +D FVLD +F+A+ F +TG+ E +I+P R++F+ +++ W PVQ+L FR+ + RVL VN+ID+ W + +SY H+
Sbjct: 150 SSISSWYMDLLTRSPLWTKTVTTSLIAVVGDTFAQYIE-RRKNHSSPVEDKEDLNKDKDSAVSNSSIGSPFFLMKNYDKRRGLSCMGENMLISGPLLHFSYNLMEAFIPTTNGGRSAIFAALTHALIDNFVLDTIFLATMFVSTGIAEG--YVREIIPQFRKDFFPTLRMGWLAGICLLPVQFLLFRFFPLSLRVLGVNIIDIFWGAYVSYMVHR 361
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A7S3LFT8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFT8_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.150e-30 Identity = 65/184 (35.33%), Postives = 107/184 (58.15%), Query Frame = 1
Query: 364 YAMWLKQSPILTKAFTSGVLALVGDMAAQCFE--YQQKGRSGPFL---WDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
Y M L +P++TK T+GV+ +GD AQ E Q+ + P + +D RR L+ ++ I+GPL+H Y L + +P G A VHV D+ LD +FVA+ + TG +E + ++P LR+++ ++ SW S F PV+++ FR+L + +RVL+VN ID+IW +S+ +H+
Sbjct: 179 YMMQLSVNPLVTKGITAGVIGSLGDFLAQSLENFLHQRKNNAPVVHSKYDPRRGLSTLLYGFFISGPLMHFAYDLFDRVLPIHGNG--AALVHVLADSIFLDAIFVAATYIVTGRMEGYKFR-QVMPQLRKDYLPTLKASWATSIFLMPVEFVCFRFLPLNYRVLAVNFIDLIWDGVISFMAHR 359
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A448Z075_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z075_9STRA) HSP 1 Score: 126 bits (317), Expect = 5.320e-30 Identity = 78/214 (36.45%), Postives = 112/214 (52.34%), Query Frame = 1
Query: 346 STLWGLYAMWLKQSPILTKAFTSGVLALVGDMAAQCFEYQQ------KGRSG----------------PFLW----DTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGG---FFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHK 900
S+L Y L SP+ TK T+ VLA+ GD AQ E + +G G PF W D RR ++I+ ++M+I+GPLLH Y ME IPT+ GG F A H +D F+LD +F+A F TTG+ E +I+P +++F+ ++ W PVQ+L FR+L + RVL VN+IDM W + +SY H+
Sbjct: 146 SSLSARYMDLLACSPLWTKTVTTSVLAVAGDSIAQYIETHKFSPSVVEGDEGFGKTKDVAVSAFSVGSPFSWLKDYDRRRGISILGENMLISGPLLHFSYNFMEQLIPTNGGGKSAFLAALSHSLIDNFILDTIFLAIMFVTTGIAEG--YVQEIIPQFKKDFFPTLRTGWIAGICLLPVQFLIFRFLPLSLRVLGVNIIDMFWGAYVSYMVHR 357
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Match: A0A1Z5K2M4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2M4_FISSO) HSP 1 Score: 114 bits (286), Expect = 2.790e-27 Identity = 65/182 (35.71%), Postives = 104/182 (57.14%), Query Frame = 1
Query: 421 LALVGDMAAQCFEYQQKGRSGPFLWDTRRVLAIVIDSMVITGPLLHAMYGLMEYFIPTSKGGFFPAAVHVALDTFVLDPVFVASFFCTTGMLESRPLKTDILPALRREFWRAVQVSWGVSFFFWPVQYLSFRYLSVEFRVLSVNLIDMIWTSAMSYFSHKHETGEEAAAKTPRDSSLADGVL 966
+ VGD AQ +E+ ++ RR +A +++ ++ +GPL+H Y L E+ +P F A +HV LD+ +LD VFV S F TG+LE K + +R+ ++ SW S F PV+ + FRYL V +RVL+VN++D++W + +S+ SHK G+E A+ T +S L +L
Sbjct: 1 MGCVGDAVAQRWEHHP-------VYSKRRGVAAMVEGLLWSGPLMHLAYSLFEHILPIGNNMGF-ALIHVLLDSLLLDSVFVTSAFWITGLLEGFSFK-QLRQQYQRDIGGTLKASWLTSLFLLPVEVVCFRYLPVTYRVLAVNVLDIVWDTVISFMSHKTR-GKELASTTTDESLLQSPIL 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19646.5479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19646.5479.1 >prot_H-elongata_contig19646.5479.1 ID=prot_H-elongata_contig19646.5479.1|Name=mRNA_H-elongata_contig19646.5479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=323bp RKRCRERGGRHSSFSGLWRFGFGRDTRVVASFPFRLVVHAYGESRRGVESback to top mRNA from alignment at H-elongata_contig19646:2758..4387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19646.5479.1 ID=mRNA_H-elongata_contig19646.5479.1|Name=mRNA_H-elongata_contig19646.5479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1630bp|location=Sequence derived from alignment at H-elongata_contig19646:2758..4387+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19646:2758..4387+ >mRNA_H-elongata_contig19646.5479.1 ID=mRNA_H-elongata_contig19646.5479.1|Name=mRNA_H-elongata_contig19646.5479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1938bp|location=Sequence derived from alignment at H-elongata_contig19646:2758..4387+ (Himanthalia elongata Himel1 dioecious)back to top |