mRNA_H-elongata_contig19640.5478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19640.5478.1
Unique NamemRNA_H-elongata_contig19640.5478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19640.5478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19640contigH-elongata_contig19640:4064..4589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.3579872-CDS-H-elongata_contig19640:4063..43781622930113.3579872-CDS-H-elongata_contig19640:4063..4378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19640 4064..4378 -
1691679285.639782-CDS-H-elongata_contig19640:4063..43781691679285.639782-CDS-H-elongata_contig19640:4063..4378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19640 4064..4378 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.3769715-UTR-H-elongata_contig19640:4378..45891622930113.3769715-UTR-H-elongata_contig19640:4378..4589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19640 4379..4589 -
1691679285.6558511-UTR-H-elongata_contig19640:4378..45891691679285.6558511-UTR-H-elongata_contig19640:4378..4589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19640 4379..4589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19640.5478.1prot_H-elongata_contig19640.5478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19640 4064..4378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19640.5478.1

>prot_H-elongata_contig19640.5478.1 ID=prot_H-elongata_contig19640.5478.1|Name=mRNA_H-elongata_contig19640.5478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MISVVRFSPRPWGSKYVLGQFGHEFPVYVFSLLPSKMTAIFVRSCTSSWT
VGRLWAPPLLSLRFFHWYQFIFSYVTSAVSFFPDLGGASIFYIWRHPGSI
RVMS*
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mRNA from alignment at H-elongata_contig19640:4064..4589-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19640.5478.1 ID=mRNA_H-elongata_contig19640.5478.1|Name=mRNA_H-elongata_contig19640.5478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=526bp|location=Sequence derived from alignment at H-elongata_contig19640:4064..4589- (Himanthalia elongata Himel1 dioecious)
GAGTAGCCGACAGACCTCATGGTTCGTCTTGGGAGGGATCAGGACGTAAG
GGGATCATCGAGTGCTAAGTGGTTCCGGATTCCGCTCGTTTTGTCCGTCA
GTCTGCGTGTCGTACCTGGGGTTAGCTATCGTTTTGGTGGGCAGTGAGGG
GTGGAGGGTACCCGCCGTCAACCATCGTTATTGGTCAGCAGTATCAGCGT
ATACCCTCTGTATGATCAGTGTAGTTCGTTTTAGTCCACGACCTTGGGGT
AGCAAGTATGTCCTGGGTCAATTCGGGCATGAGTTTCCGGTTTATGTCTT
TAGTCTTCTACCATCTAAGATGACAGCAATCTTCGTTCGGTCATGTACGT
CCTCTTGGACAGTCGGTCGGCTTTGGGCTCCGCCGTTGCTTAGTCTTCGT
TTTTTTCATTGGTATCAGTTTATATTCTCGTACGTTACCAGTGCAGTTTC
ATTTTTTCCCGACCTTGGAGGTGCAAGTATTTTTTATATTTGGCGTCATC
CTGGGTCAATTCGGGTCATGAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig19640:4064..4589-

>mRNA_H-elongata_contig19640.5478.1 ID=mRNA_H-elongata_contig19640.5478.1|Name=mRNA_H-elongata_contig19640.5478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig19640:4064..4589- (Himanthalia elongata Himel1 dioecious)
ATGATCAGTGTAGTTCGTTTTAGTCCACGACCTTGGGGTAGCAAGTATGT
CCTGGGTCAATTCGGGCATGAGTTTCCGGTTTATGTCTTTAGTCTTCTAC
CATCTAAGATGACAGCAATCTTCGTTCGGTCATGTACGTCCTCTTGGACA
GTCGGTCGGCTTTGGGCTCCGCCGTTGCTTAGTCTTCGTTTTTTTCATTG
GTATCAGTTTATATTCTCGTACGTTACCAGTGCAGTTTCATTTTTTCCCG
ACCTTGGAGGTGCAAGTATTTTTTATATTTGGCGTCATCCTGGGTCAATT
CGGGTCATGAGCTGAATGATCAGTGTAGTTCGTTTTAGTCCACGACCTTG
GGGTAGCAAGTATGTCCTGGGTCAATTCGGGCATGAGTTTCCGGTTTATG
TCTTTAGTCTTCTACCATCTAAGATGACAGCAATCTTCGTTCGGTCATGT
ACGTCCTCTTGGACAGTCGGTCGGCTTTGGGCTCCGCCGTTGCTTAGTCT
TCGTTTTTTTCATTGGTATCAGTTTATATTCTCGTACGTTACCAGTGCAG
TTTCATTTTTTCCCGACCTTGGAGGTGCAAGTATTTTTTATATTTGGCGT
CATCCTGGGTCAATTCGGGTCATGAGCTGA
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