mRNA_H-elongata_contig196353.5474.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196353.5474.1
Unique NamemRNA_H-elongata_contig196353.5474.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196353.5474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196353contigH-elongata_contig196353:186..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size132
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196353.5474.1prot_H-elongata_contig196353.5474.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196353 186..1038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.939627-CDS-H-elongata_contig196353:185..2611622930112.939627-CDS-H-elongata_contig196353:185..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196353 186..261 +
1691679285.4434218-CDS-H-elongata_contig196353:185..2611691679285.4434218-CDS-H-elongata_contig196353:185..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196353 186..261 +
1622930112.9529128-CDS-H-elongata_contig196353:982..10381622930112.9529128-CDS-H-elongata_contig196353:982..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196353 983..1038 +
1691679285.4522014-CDS-H-elongata_contig196353:982..10381691679285.4522014-CDS-H-elongata_contig196353:982..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196353 983..1038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.9694638-UTR-H-elongata_contig196353:1038..10611622930112.9694638-UTR-H-elongata_contig196353:1038..1061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig196353 1039..1061 +
1691679285.461467-UTR-H-elongata_contig196353:1038..10611691679285.461467-UTR-H-elongata_contig196353:1038..1061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig196353 1039..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196353.5474.1

>prot_H-elongata_contig196353.5474.1 ID=prot_H-elongata_contig196353.5474.1|Name=mRNA_H-elongata_contig196353.5474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
RNEPRGRAPPQETSRGLCLLVHDVLGVWSHSKWFEFVLLKCFG*
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mRNA from alignment at H-elongata_contig196353:186..1061+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196353.5474.1 ID=mRNA_H-elongata_contig196353.5474.1|Name=mRNA_H-elongata_contig196353.5474.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at H-elongata_contig196353:186..1061+ (Himanthalia elongata Himel1 dioecious)
AGAAACGAGCCGCGTGGCCGAGCGCCTCCGCAAGAAACGAGCCGCGGCTT
GTGCCTCTTGGTGCATGATGTTCTTGGTGAGAGAGAGGCACAGAGAGCTT
CATGGAGCAGCTCTGAGCAACCAAGCTTTCCTTCCAGTCACGGGCGGGAA
CACCCATCTTCTGTATACTGAGTCACGTGGACACCCATCTTCTGTATACT
GATCGGCTCGCTGCAGGCGGCACGTTTGTTCGCTTCATGTGGTTTACATA
CGTGGAGAAACTTGAAAGAGGTCAAATATTTAATCTAATGTTTTACATGG
TGTTTACCGGAAAGCTCACTAGGCTGTTGCGTTTGACTAAACCTTAAAAC
AAACAAACAAACAAAAAAACATAGGGCTTGCGCCCTCTACGCGCGCAGAG
ATGTATGCGGCCTTTAGTTCGTTCCCCCGCCTCAAACATGCCTGTTAGGT
TTCCGGTTTGAAAATTTATTCTTAGTTTTTAATGCTGGTAAAAAAACACT
CACACTCATACGGGACGCTGAAAACTTTGCACCCCTTCTGCCCCCCTAGA
CACCCCTTAAGGCCTTAAGGGTATCACCTTGTTATATAGTACGTGTCTAT
AAATAGCCGCAACTGAGCCAGGCAGCGTGAGTAACCCAGACCACGATAAA
CAAATCCCTGGCTAGGCTTTGGTTCGTCGGTGTGGAGCGAAAGGGTTATA
ATATAAAATGGAAGGTGACCTTGGCATCTTGCCAGCTTTCTTCTTACTCT
CATGTATGGTGATTGGTCGTTGCTCGTCTACTGCTGCTGAACAACAGGTG
TGTGGAGTCATTCCAAATGGTTCGAGTTTGTTCTTCTGAAATGCTTCGGT
TGAAGACTCCATCTCCTCATTTTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig196353:186..1061+

>mRNA_H-elongata_contig196353.5474.1 ID=mRNA_H-elongata_contig196353.5474.1|Name=mRNA_H-elongata_contig196353.5474.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig196353:186..1061+ (Himanthalia elongata Himel1 dioecious)
AGAAACGAGCCGCGTGGCCGAGCGCCTCCGCAAGAAACGAGCCGCGGCTT
GTGCCTCTTGGTGCATGATGTTCTTGAGAAACGAGCCGCGTGGCCGAGCG
CCTCCGCAAGAAACGAGCCGCGGCTTGTGCCTCTTGGTGCATGATGTTCT
TGGTGTGTGGAGTCATTCCAAATGGTTCGAGTTTGTTCTTCTGAAATGCT
TCGGTTGAGTGTGTGGAGTCATTCCAAATGGTTCGAGTTTGTTCTTCTGA
AATGCTTCGGTTGA
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