mRNA_H-elongata_contig196338.5473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196338.5473.1
Unique NamemRNA_H-elongata_contig196338.5473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: D8LCU4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, family GT54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.120e-17
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            SYHP WIAIRASFGMNGILI D DVL FA+YLE +QKRRPPDHLVV
Sbjct:  282 SYHPDWIAIRASFGMNGILIQDKDVLTFASYLEMHQKRRPPDHLVV 327
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A6H5JEY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.340e-17
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            SYHP WIAIRASFGMNGILI D DVL FA+YLE +QKRRPPDHLVV
Sbjct:  447 SYHPDWIAIRASFGMNGILIQDKDVLTFASYLEMHQKRRPPDHLVV 492
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S3ZTN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTN9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.220e-14
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 YHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            ++P W+AIRASFGMNGI + D D+LPFA YLE +Q RRPPDHLVV
Sbjct:  303 FYPDWLAIRASFGMNGIFLKDADLLPFADYLEEHQARRPPDHLVV 347
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S3H1Q4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1Q4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.240e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 YHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            YHP W+AIRAS+GMNGI + + D+  FA YL ++Q RRPPDHLVV
Sbjct:   93 YHPNWLAIRASYGMNGIFMHNNDLETFADYLLKHQARRPPDHLVV 137
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S2CBD4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBD4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.340e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            SY P WIAIRASFGMNGI +   D+  F+ YL  +Q RRPPDHLVV
Sbjct:   12 SYDPDWIAIRASFGMNGIFMKSTDLRFFSDYLIEHQARRPPDHLVV 57
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S3LL88_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL88_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.020e-11
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 YHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            YH  WIAIRASFG+NG+ +   DV   A Y E+ QKRRPPDHLVV
Sbjct:  229 YHGDWIAIRASFGLNGVFLSQKDVSALANYFEKNQKRRPPDHLVV 273
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S1U3S5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.280e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            +Y+  WIA+R SFGMNGI I   DV  FA YLE +Q RRPPDHLVV
Sbjct:  324 AYYGEWIAVRCSFGMNGIFITGDDVPIFANYLEEHQSRRPPDHLVV 369
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BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A0L0DVV5_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVV5_THETB)

HSP 1 Score: 63.2 bits (152), Expect = 1.980e-10
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHL 132
            +Y PG++++RASFG+ GI++P  D L FA YLE++Q RRPPDHL
Sbjct:  240 AYSPGFVSVRASFGLAGIVMPSPDALVFADYLEKHQARRPPDHL 283
[Close]
BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S2MHH0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHH0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.230e-9
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            +Y   WIAIRASFGMNGI +   D+  FA YL  +Q RRPPDHLVV
Sbjct:  163 AYSSDWIAIRASFGMNGIFMRGYDLPVFADYLVEHQARRPPDHLVV 208
[Close]
BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Match: A0A7S3UTA4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA4_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 6.210e-9
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 PGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV 138
            P W+A+R+S+GMNGI + D D+  FA Y+E++Q RRP DHLVV
Sbjct:  206 PDWLAVRSSYGMNGIALQDKDLGAFADYMEQHQARRPCDHLVV 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196338.5473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LCU4_ECTSI1.120e-1784.78Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
A0A6H5JEY6_9PHAE1.340e-1784.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZTN9_9STRA1.220e-1471.11Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3H1Q4_9STRA2.240e-1264.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2CBD4_9STRA2.340e-1165.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3LL88_9STRA3.020e-1164.44Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1U3S5_9STRA4.280e-1165.22Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0L0DVV5_THETB1.980e-1059.09Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S2MHH0_9STRA2.230e-963.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3UTA4_HETAK6.210e-958.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196338contigH-elongata_contig196338:821..958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9.2e-15
Seed eggNOG ortholog2880.D8LCU4
EggNOG OGs2CXVF@1,2S024@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.8981652-CDS-H-elongata_contig196338:820..9581622930112.8981652-CDS-H-elongata_contig196338:820..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196338 821..958 +
1691679285.432775-CDS-H-elongata_contig196338:820..9581691679285.432775-CDS-H-elongata_contig196338:820..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196338 821..958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196338.5473.1prot_H-elongata_contig196338.5473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196338 821..958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196338.5473.1

>prot_H-elongata_contig196338.5473.1 ID=prot_H-elongata_contig196338.5473.1|Name=mRNA_H-elongata_contig196338.5473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
SYHPGWIAIRASFGMNGILIPDGDVLPFATYLERYQKRRPPDHLVV
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mRNA from alignment at H-elongata_contig196338:821..958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196338.5473.1 ID=mRNA_H-elongata_contig196338.5473.1|Name=mRNA_H-elongata_contig196338.5473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig196338:821..958+ (Himanthalia elongata Himel1 dioecious)
AGCTATCACCCAGGCTGGATAGCGATTCGAGCGTCATTCGGCATGAACGG
GATCTTGATTCCAGACGGGGACGTGCTTCCCTTTGCGACCTACCTTGAAC
GATACCAGAAGCGCAGACCCCCAGATCACCTCGTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig196338:821..958+

>mRNA_H-elongata_contig196338.5473.1 ID=mRNA_H-elongata_contig196338.5473.1|Name=mRNA_H-elongata_contig196338.5473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig196338:821..958+ (Himanthalia elongata Himel1 dioecious)
AGCTATCACCCAGGCTGGATAGCGATTCGAGCGTCATTCGGCATGAACGG
GATCTTGATTCCAGACGGGGACGTGCTTCCCTTTGCGACCTACCTTGAAC
GATACCAGAAGCGCAGACCCCCAGATCACCTCGTGGTGAGCTATCACCCA
GGCTGGATAGCGATTCGAGCGTCATTCGGCATGAACGGGATCTTGATTCC
AGACGGGGACGTGCTTCCCTTTGCGACCTACCTTGAACGATACCAGAAGC
GCAGACCCCCAGATCACCTCGTGGTG
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