mRNA_H-elongata_contig196311.5472.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196311.5472.1
Unique NamemRNA_H-elongata_contig196311.5472.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A6H5KBN6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN6_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.860e-68
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 1
Query:    1 TKSLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKLREAGRKK 402
            T  L +VDLAGSERIKVSGVTG GLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFA RARN+SLGPAH+NVGAKNLLEE K+LR+KLREAGRKK
Sbjct:  947 TGRLFLVDLAGSERIKVSGVTGVGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFATRARNISLGPAHKNVGAKNLLEEGKDLRAKLREAGRKK 1080          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: D7FTD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD0_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 2.110e-67
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 1
Query:    1 TKSLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKLREAGRKK 402
            T  L +VDLAGSERIKVSGVTG GLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFA RARN+SLGPA +NVGAKNLLEE K+LR+KLREAGRKK
Sbjct:  626 TGRLFLVDLAGSERIKVSGVTGVGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFATRARNISLGPARKNVGAKNLLEEGKDLRAKLREAGRKK 759          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A482R3X9_9EURY (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R3X9_9EURY)

HSP 1 Score: 155 bits (393), Expect = 1.040e-42
Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   10 LLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRS 375
            L +VDLAGSER++ S VTGA LREA +IN SL+ALGDV++ALD++Q H+P+RNSKLT LLQDALGGN+RT M+ TVCP     DET+F+LQFA+RARN+ LGPA R V  KN+ E+ + LR+
Sbjct:  106 LYLVDLAGSERVRKSAVTGARLREAQHINKSLAALGDVLEALDKRQPHIPFRNSKLTHLLQDALGGNARTLMMATVCPEHFTADETVFSLQFASRARNIDLGPAQRTVQFKNVTEQYRSLRA 227          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A836CIB8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.950e-42
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 1
Query:   10 LLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDAL--GGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPA 321
            L +VDLAGSER+K+SGV+G  +REAT+INSSLSALGDVM AL+ K KHVPYRNSKLT LL DAL  G  SRTA+VVTVCPT L VDE++  L FA+R RN+SLGPA
Sbjct:   44 LFLVDLAGSERVKISGVSGEAMREATHINSSLSALGDVMHALETKAKHVPYRNSKLTHLLSDALASGSGSRTALVVTVCPTELTVDESVSTLMFASRVRNISLGPA 149          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A7S3V5Y7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Y7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.150e-41
Identity = 80/126 (63.49%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    7 SLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKLR 384
            +L +VDLAGSER++ SGV GA LREAT IN SLSALG+VM+ALD+K  H+PYR+SKLT+LLQD+LGGNSRT MVVT CPT+ + DET  AL+FA R R +++G A RNV +KNL E  K L  +L+
Sbjct:  969 TLYLVDLAGSERVRKSGVEGANLREATQINKSLSALGNVMEALDRKASHIPYRDSKLTYLLQDSLGGNSRTMMVVTCCPTSSSFDETKHALEFATRVRRINIGSAKRNVASKNLEETVKHLNYELK 1094          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A7S2XWV2_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWV2_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.130e-40
Identity = 80/134 (59.70%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    1 TKSLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKLREAGRKK 402
            T  L +VDLAGSER+K SGV G  L EA  IN SLSALGDVM+AL QKQ HVPYRNSKLT LLQDALGGNS T MVVTVCPT    +E+  AL+FA R R +      +N+  +NL ++ K+L+S++RE  +KK
Sbjct:   90 TSRLHLVDLAGSERVKNSGVQGKELTEAQYINKSLSALGDVMEALHQKQPHVPYRNSKLTHLLQDALGGNSFTVMVVTVCPTLKTCEESARALEFAKRVRTIQRDRVQKNLQNRNLQDQIKQLKSQIREITKKK 223          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A8J9TLX4_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TLX4_PHATR)

HSP 1 Score: 141 bits (356), Expect = 1.080e-39
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 1
Query:    7 SLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNL 348
            +L +VDLAGSER++ S V G  L+EA  IN SLSALG+VM+ALD+K  HVPYR+SKLT+LLQD+LGGNSRT MVV +CPT  + DE++ ALQFA R R + +G A RNV +KNL
Sbjct:  110 TLYLVDLAGSERVRKSNVQGDQLKEAGYINKSLSALGNVMEALDRKASHVPYRDSKLTYLLQDSLGGNSRTMMVVAICPTDSSYDESVHALQFATRVRRIQIGAAQRNVTSKNL 223          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A7S0BXE0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BXE0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.100e-39
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 TKSLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKLR 384
            T +L +VDLAGSER++ S V G  ++EA +IN SLSALGDVM+ALD+K  H+P+RNSKLT+LLQD LGGNS+T MVV  CPT  + DETL ALQFA R R ++LG A RNV +KNL E  K L S L+
Sbjct:  290 TGNLFLVDLAGSERVRKSNVEGKEMKEAQHINKSLSALGDVMEALDRKASHIPFRNSKLTYLLQDCLGGNSKTMMVVACCPTDNSFDETLCALQFATRVRRINLGSAQRNVTSKNLEETIKALTSDLK 417          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A7S2PGW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PGW0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.880e-39
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1
Query:   37 ERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKL 381
            ER++ S V G  L+EA +IN SLSALG+VM+ALD+K  HVPYR+SKLT LLQ+ALGGNSRT MVVTVCP   + DET FAL+FA R R ++LG A +NV AKNL E  K L S+L
Sbjct:    1 ERVRKSEVEGQALKEAQHINKSLSALGNVMEALDRKSSHVPYRDSKLTHLLQNALGGNSRTMMVVTVCPHNNSYDETAFALKFATRVRRINLGSAQKNVNAKNLEESVKNLTSEL 115          
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Match: A0A7S2RV88_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RV88_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.980e-39
Identity = 76/126 (60.32%), Postives = 97/126 (76.98%), Query Frame = 1
Query:    7 SLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARARNVSLGPAHRNVGAKNLLEETKELRSKLR 384
            +L +VDLAGSER++ S V G  L+EAT+IN SL+ALG+VM+ALD+K  HVPYR+SKLT+LLQD LGGNSRT MVVT CP + + DET  ALQFA R R + +G A +NV +KNL E  K + S+L+
Sbjct:   77 NLFLVDLAGSERVRKSAVAGQQLKEATHINKSLAALGNVMEALDRKASHVPYRDSKLTYLLQDCLGGNSRTMMVVTACPGSGSYDETQCALQFATRVRRIHVGTAQKNVSSKNLEETVKNISSELK 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196311.5472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBN6_9PHAE1.860e-6891.79Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D7FTD0_ECTSI2.110e-6791.04Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A482R3X9_9EURY1.040e-4263.93Kinesin motor domain-containing protein (Fragment)... [more]
A0A836CIB8_9STRA1.950e-4271.70P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3V5Y7_9STRA2.150e-4163.49Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2XWV2_9STRA6.130e-4059.70Kinesin-like protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J9TLX4_PHATR1.080e-3963.16Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S0BXE0_9STRA1.100e-3961.72Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2PGW0_9STRA1.880e-3963.48Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2RV88_9STRA1.980e-3960.32Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196311contigH-elongata_contig196311:266..1095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.7e-59
Seed eggNOG ortholog2880.D7FTD0
KEGG koko:K10406
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-21_000900.1
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.8113267-CDS-H-elongata_contig196311:265..4751622930112.8113267-CDS-H-elongata_contig196311:265..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196311 266..475 -
1691679285.41099-CDS-H-elongata_contig196311:265..4751691679285.41099-CDS-H-elongata_contig196311:265..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196311 266..475 -
1622930112.835193-CDS-H-elongata_contig196311:903..10951622930112.835193-CDS-H-elongata_contig196311:903..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196311 904..1095 -
1691679285.4236774-CDS-H-elongata_contig196311:903..10951691679285.4236774-CDS-H-elongata_contig196311:903..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196311 904..1095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196311.5472.1prot_H-elongata_contig196311.5472.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196311 266..1095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196311.5472.1

>prot_H-elongata_contig196311.5472.1 ID=prot_H-elongata_contig196311.5472.1|Name=mRNA_H-elongata_contig196311.5472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
TKSLLVVDLAGSERIKVSGVTGAGLREATNINSSLSALGDVMQALDQKQK
HVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFAARAR
NVSLGPAHRNVGAKNLLEETKELRSKLREAGRKK
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mRNA from alignment at H-elongata_contig196311:266..1095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196311.5472.1 ID=mRNA_H-elongata_contig196311.5472.1|Name=mRNA_H-elongata_contig196311.5472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig196311:266..1095- (Himanthalia elongata Himel1 dioecious)
ACAAAATCCCTCCTTGTAGTCGACCTCGCCGGCAGCGAGCGCATCAAGGT CTCGGGGGTGACGGGCGCGGGGCTCCGTGAGGCCACAAACATCAACTCCA GCCTCAGCGCGCTGGGCGACGTGATGCAGGCGCTTGACCAAAAGCAGAAG CACGTGCCCTACAGGAACTCCAAGCTGACCTTCCTCCTGCAGGTAAAGGG TAGCCAGCCACTGTGAGTGTGTGTGTGTGTGTGTGTTATGAACATTTTGG TGCCACAGTTAATTAGTTAGTTAGTTAGTTACTTGCTTACCTGGTAGTTA GTTAGTTAGTTAGTTAGTTAGTTAAAGGCGGCGCCTGTCACGAAGACCTT GCTGGCGTCCGACCATGTACACTATAGGACTAGACACCAAAATAAAATGA AAGACTCGCTCGGCCGCCACAACAGATCAGTATACTAGATCCAGTACACT ATTGAGCTCTGTTAGGAGTCAATCGGTGAACAGCACAGCGCTGGGACGAT AATGTACTACAACTGTCTCTCTCTCTCTTTCAAACAGAGGAGGCGTTCTC TGCTCGGAAACACTGCCGTTTCCATTCGTGAAAGGCCTTCATATTTTTGT GCCCTCCTACCTCCTCCCAGGATGCCCTCGGGGGAAACTCGAGAACCGCG ATGGTGGTTACGGTGTGCCCGACGACATTGAACGTGGACGAGACCCTTTT CGCTCTGCAGTTCGCCGCCCGTGCCCGCAACGTCAGTCTGGGGCCGGCGC ACCGGAACGTTGGGGCGAAGAATCTCTTGGAAGAGACGAAGGAGTTGCGA TCGAAGCTTCGAGAGGCCGGCCGCAAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig196311:266..1095-

>mRNA_H-elongata_contig196311.5472.1 ID=mRNA_H-elongata_contig196311.5472.1|Name=mRNA_H-elongata_contig196311.5472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig196311:266..1095- (Himanthalia elongata Himel1 dioecious)
ACAAAATCCCTCCTTGTAGTCGACCTCGCCGGCAGCGAGCGCATCAAGGT
CTCGGGGGTGACGGGCGCGGGGCTCCGTGAGGCCACAAACATCAACTCCA
GCCTCAGCGCGCTGGGCGACGTGATGCAGGCGCTTGACCAAAAGCAGAAG
CACGTGCCCTACAGGAACTCCAAGCTGACCTTCCTCCTGCAGACAAAATC
CCTCCTTGTAGTCGACCTCGCCGGCAGCGAGCGCATCAAGGTCTCGGGGG
TGACGGGCGCGGGGCTCCGTGAGGCCACAAACATCAACTCCAGCCTCAGC
GCGCTGGGCGACGTGATGCAGGCGCTTGACCAAAAGCAGAAGCACGTGCC
CTACAGGAACTCCAAGCTGACCTTCCTCCTGCAGGATGCCCTCGGGGGAA
ACTCGAGAACCGCGATGGTGGTTACGGTGTGCCCGACGACATTGAACGTG
GACGAGACCCTTTTCGCTCTGCAGTTCGCCGCCCGTGCCCGCAACGTCAG
TCTGGGGCCGGCGCACCGGAACGTTGGGGCGAAGAATCTCTTGGAAGAGA
CGAAGGAGTTGCGATCGAAGCTTCGAGAGGCCGGCCGCAAAAAGGATGCC
CTCGGGGGAAACTCGAGAACCGCGATGGTGGTTACGGTGTGCCCGACGAC
ATTGAACGTGGACGAGACCCTTTTCGCTCTGCAGTTCGCCGCCCGTGCCC
GCAACGTCAGTCTGGGGCCGGCGCACCGGAACGTTGGGGCGAAGAATCTC
TTGGAAGAGACGAAGGAGTTGCGATCGAAGCTTCGAGAGGCCGGCCGCAA
AAAG
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