mRNA_H-elongata_contig196160.5467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196160.5467.1
Unique NamemRNA_H-elongata_contig196160.5467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: D8LEY3_ECTSI (Serine/threonine-protein phosphatase 6 regulatory subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.400e-18
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   22 PPPSST--NASARFPYMSCEIICCEVADILTAVANDTDTG----PLKKLFSMLDQEGDIDAHRAGYLEKV 213
            PPP     N   +FPYMSCEIICCEV +IL A+A+D   G    PL+KLFS+LD EGDID+HRAGYLEKV
Sbjct:   60 PPPEGAPDNRVFKFPYMSCEIICCEVPEILKAIASDGAGGGDDCPLRKLFSILDGEGDIDSHRAGYLEKV 129          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: A0A6H5LCR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCR6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.290e-13
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   22 PPPSST--NASARFPYMSCEIICCEVADILTAVANDT----DTGPLKKLFSMLDQEGDIDAHRAG 198
            PPP     N   +FPYMSCEIICCEV +IL A+A D     D  PL+KLFS+LD EGDID+HRAG
Sbjct:   30 PPPEGAPDNRVFKFPYMSCEIICCEVPEILKAIAFDGVGGGDDCPLRKLFSILDGEGDIDSHRAG 94          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: A0A024G6J8_9STRA (Uncharacterized protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024G6J8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.280e-10
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   10 VTTSPPPSS-TNASARFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQEGDIDAHRAGYLEKVG 216
            ++TSP  SS    + ++PYMSCE+ICC+V  ILT +    D   ++ LFS LD  G +D   AGY EKVG
Sbjct:   75 ISTSPSDSSDVLRTFKYPYMSCEVICCDVESILTTIVTTGDGQLIESLFSFLDPPGALDTRLAGYFEKVG 144          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: W7TD98_9STRA (Sit4 phosphatase-associated family protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD98_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.150e-10
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   22 PPPSSTNASA--RFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQEGDIDAHRAGYLEKV 213
            PPP   +     +FPYM+CE ICCE   +L A+ +  D   L+++FS+LD+EGD+D    GY EKV
Sbjct:   74 PPPDGADDKRVHKFPYMACEAICCENDHVLDALVSTRDGEMLRRMFSLLDKEGDLDDRLTGYFEKV 139          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: F0WEH4_9STRA (Serine/threonineprotein phosphatase 6 regulatory subunit putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEH4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.480e-9
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   52 RFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQEGDIDAHRAGYLEKV 213
            ++PYMSCE+ICC+V  IL+A+    D   ++ LFS+LDQ+  +D   AGY EKV
Sbjct:   90 KYPYMSCEVICCDVDSILSAIIKTGDGQLIETLFSLLDQQEALDTRLAGYFEKV 143          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: K3WM88_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM88_GLOUD)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-7
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   28 PSSTNASARFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQEGDIDAHRAGYLEKV 213
            PS    + ++PYMSCE+ICC++  I   +A  ++   ++ LF  L Q G +D+  AGY EK+
Sbjct:   81 PSDDMRTLKYPYMSCEVICCDIMSITETLAGASEGKIVETLFEFLYQSGPLDSRLAGYFEKI 142          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: A0A7S1BSS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSS7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-7
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   52 RFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLD-QEGDIDAHRAGYLEKV 213
            R+P+M+CE+ICC V  I+  +  + D G L KLF +L+ +EG +D   AGY E+V
Sbjct:  178 RYPFMACEVICCNVDCIIDGLMEEMDGGVLAKLFEILEWEEGTMDVRLAGYFERV 232          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: A0A835YR29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR29_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.060e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   52 RFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQE-GDIDAHRAGYLEKV 213
            ++PYM+CEI+CCEV  +L A+A       L +L SMLDQ  G +D   AGYLE+ 
Sbjct:   92 KYPYMACEIVCCEVDRVLAAIAEQP--SHLAQLLSMLDQPPGGLDHRHAGYLEEA 144          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: A0A2R5GLA3_9STRA (Serine/threonine-protein phosphatase 6 regulatory subunit 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLA3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.070e-6
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   52 RFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQEGDIDAHRAGYLEKV 213
            RFP+++CE+ICC +  I+  + N  D   L K FS+LD+E  +D+  AGY  K+
Sbjct:  213 RFPFIACEVICCNLTQIIEPLVNSADL--LSKFFSLLDREPPLDSRLAGYFFKI 264          
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Match: A0A6A3YR10_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YR10_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.970e-6
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   10 VTTSPPPSSTNASARFPYMSCEIICCEVADILTAVANDTDTGPLKKLFSMLDQEGDIDAHRAGYLEKV 213
            V +S  PS    + ++PYM+CE+ICC++  I   +   +D   ++ L   LDQ   +D   AGY EK+
Sbjct:   76 VESSEDPSDDLRTLKYPYMACEVICCDITSITETLVTASDGAIVETLLGFLDQPALLDPRLAGYFEKI 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196160.5467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY3_ECTSI4.400e-1864.29Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6H5LCR6_9PHAE1.290e-1361.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024G6J8_9STRA2.280e-1047.14Uncharacterized protein n=4 Tax=Albugo candida Tax... [more]
W7TD98_9STRA3.150e-1045.45Sit4 phosphatase-associated family protein n=3 Tax... [more]
F0WEH4_9STRA1.480e-950.00Serine/threonineprotein phosphatase 6 regulatory s... [more]
K3WM88_GLOUD1.180e-738.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1BSS7_9STRA1.820e-745.45Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A835YR29_9STRA1.060e-649.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5GLA3_9STRA1.070e-642.59Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6A3YR10_9STRA1.970e-635.29Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196160contigH-elongata_contig196160:297..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LEY3
KEGG koko:K15501
GOsGO:0000226,GO:0000235,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007275,GO:0008150,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0030029,GO:0030036,GO:0030588,GO:0030590,GO:0030865,GO:0030866,GO:0032501,GO:0032502,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051293,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:0071944,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902850,GO:1903047
EggNOG free text desc.protein phosphatase binding
EggNOG OGsKOG2073@1,KOG2073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.208262-CDS-H-elongata_contig196160:296..5301622930112.208262-CDS-H-elongata_contig196160:296..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196160 297..530 -
1691679285.1484718-CDS-H-elongata_contig196160:296..5301691679285.1484718-CDS-H-elongata_contig196160:296..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196160 297..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196160.5467.1prot_H-elongata_contig196160.5467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196160 297..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196160.5467.1

>prot_H-elongata_contig196160.5467.1 ID=prot_H-elongata_contig196160.5467.1|Name=mRNA_H-elongata_contig196160.5467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
FVSVTTSPPPSSTNASARFPYMSCEIICCEVADILTAVANDTDTGPLKKL
FSMLDQEGDIDAHRAGYLEKVGGGGGG*
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mRNA from alignment at H-elongata_contig196160:297..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196160.5467.1 ID=mRNA_H-elongata_contig196160.5467.1|Name=mRNA_H-elongata_contig196160.5467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig196160:297..530- (Himanthalia elongata Himel1 dioecious)
TTTGTCTCTGTGACAACCTCCCCCCCCCCCTCCTCCACCAACGCTTCCGC CAGGTTTCCGTACATGTCGTGCGAGATTATCTGCTGCGAGGTTGCGGATA TCCTTACGGCGGTGGCTAACGATACCGACACGGGACCCCTCAAAAAGCTG TTTTCGATGCTAGATCAAGAGGGCGACATCGACGCTCACCGCGCGGGGTA CTTGGAAAAGGTGGGAGGAGGGGGAGGGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig196160:297..530-

>mRNA_H-elongata_contig196160.5467.1 ID=mRNA_H-elongata_contig196160.5467.1|Name=mRNA_H-elongata_contig196160.5467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig196160:297..530- (Himanthalia elongata Himel1 dioecious)
TTTGTCTCTGTGACAACCTCCCCCCCCCCCTCCTCCACCAACGCTTCCGC
CAGGTTTCCGTACATGTCGTGCGAGATTATCTGCTGCGAGGTTGCGGATA
TCCTTACGGCGGTGGCTAACGATACCGACACGGGACCCCTCAAAAAGCTG
TTTTCGATGCTAGATCAAGAGGGCGACATCGACGCTCACCGCGCGGGGTA
CTTGGAAAAGGTGGGAGGAGGGGGAGGGGGGTAATTTGTCTCTGTGACAA
CCTCCCCCCCCCCCTCCTCCACCAACGCTTCCGCCAGGTTTCCGTACATG
TCGTGCGAGATTATCTGCTGCGAGGTTGCGGATATCCTTACGGCGGTGGC
TAACGATACCGACACGGGACCCCTCAAAAAGCTGTTTTCGATGCTAGATC
AAGAGGGCGACATCGACGCTCACCGCGCGGGGTACTTGGAAAAGGTGGGA
GGAGGGGGAGGGGGGTAA
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