mRNA_H-elongata_contig196143.5465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196143.5465.1
Unique NamemRNA_H-elongata_contig196143.5465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 8.450e-18
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   40 KGPVTFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPDVVALNAAVDAFVR 189
            KGPVT+CVLLKGYGRQRRL  VE  MREM+ R +VPDVVALNAAVDAFVR
Sbjct:  118 KGPVTYCVLLKGYGRQRRLGGVESTMREMKERGIVPDVVALNAAVDAFVR 167
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BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.520e-17
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   40 KGPVTFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPDVVALNAAVDAFVR 189
            KGPVT+CVLLKGYGRQRRL  VE  MREM+ R +VPDVVALNAAVDA VR
Sbjct:  581 KGPVTYCVLLKGYGRQRRLRGVESTMREMKERGIVPDVVALNAAVDALVR 630
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BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Match: A0A835YV31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV31_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.690e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   43 GPVTFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPDVVALNAAVDAFVR 189
            G VT C+L+KGYGRQRR   V+  +R MR  RV PDVV LNAAVDA+VR
Sbjct:  131 GNVTHCILVKGYGRQRRAHRVDAALRGMRRARVAPDVVTLNAAVDAYVR 179
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BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Match: A0A7S2SBE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBE2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.800e-5
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   49 VTFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPDVVALNAAVDAFVR 189
            VT+C+L+KGYGR      V+ ++ +MR   V  DV+ LNAA+DA+VR
Sbjct:   76 VTYCILIKGYGRLGSDQAVDHLLADMRKHGVKLDVITLNAAMDAYVR 122
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BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Match: A0A7S0LHA5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHA5_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 3.510e-5
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   49 VTFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPDVVALNAAVDAFVR 189
            +TFC+L+KGYGR   +  V  +   MR R V PD+   NA +DA VR
Sbjct:  177 LTFCILIKGYGRVADIPRVRRIYSTMRRRSVAPDLATFNALLDAIVR 223
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BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Match: R7QT83_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT83_CHOCR)

HSP 1 Score: 48.1 bits (113), Expect = 8.990e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   52 TFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPDVVALNAAVDAFVR 189
            T  VL+K +GRQR +  V +V+  +  RR+ PD++ LN A+DA+VR
Sbjct:  255 TVSVLIKAHGRQRNVEGVTNVLNGLVGRRIEPDLIVLNTAIDAYVR 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196143.5465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBV9_ECTSI8.450e-1882.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7F1_9PHAE7.520e-1780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV31_9STRA2.690e-1165.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SBE2_9STRA1.800e-548.94Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0LHA5_9EUKA3.510e-546.81Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
R7QT83_CHOCR8.990e-545.65Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196143contigH-elongata_contig196143:916..1107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue7.5e-15
Seed eggNOG ortholog2880.D8LBV9
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.1078925-CDS-H-elongata_contig196143:915..11071622930112.1078925-CDS-H-elongata_contig196143:915..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196143 916..1107 -
1691679285.104966-CDS-H-elongata_contig196143:915..11071691679285.104966-CDS-H-elongata_contig196143:915..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196143 916..1107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196143.5465.1prot_H-elongata_contig196143.5465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196143 916..1107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196143.5465.1

>prot_H-elongata_contig196143.5465.1 ID=prot_H-elongata_contig196143.5465.1|Name=mRNA_H-elongata_contig196143.5465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MTPLPLSLSLSPLKGPVTFCVLLKGYGRQRRLSEVEDVMREMRSRRVVPD
VVALNAAVDAFVR*
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mRNA from alignment at H-elongata_contig196143:916..1107-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196143.5465.1 ID=mRNA_H-elongata_contig196143.5465.1|Name=mRNA_H-elongata_contig196143.5465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig196143:916..1107- (Himanthalia elongata Himel1 dioecious)
ATGACCCCCCTCCCCCTCTCTCTCTCTCTCTCCCCGTTGAAAGGCCCTGT
GACGTTCTGTGTGCTGCTGAAGGGGTACGGGAGGCAGCGGCGACTTTCCG
AGGTGGAGGACGTGATGCGAGAGATGCGCTCGAGGAGAGTCGTCCCGGAC
GTTGTCGCCCTCAACGCGGCCGTTGATGCTTTCGTCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig196143:916..1107-

>mRNA_H-elongata_contig196143.5465.1 ID=mRNA_H-elongata_contig196143.5465.1|Name=mRNA_H-elongata_contig196143.5465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig196143:916..1107- (Himanthalia elongata Himel1 dioecious)
ATGACCCCCCTCCCCCTCTCTCTCTCTCTCTCCCCGTTGAAAGGCCCTGT
GACGTTCTGTGTGCTGCTGAAGGGGTACGGGAGGCAGCGGCGACTTTCCG
AGGTGGAGGACGTGATGCGAGAGATGCGCTCGAGGAGAGTCGTCCCGGAC
GTTGTCGCCCTCAACGCGGCCGTTGATGCTTTCGTCAGGTAAATGACCCC
CCTCCCCCTCTCTCTCTCTCTCTCCCCGTTGAAAGGCCCTGTGACGTTCT
GTGTGCTGCTGAAGGGGTACGGGAGGCAGCGGCGACTTTCCGAGGTGGAG
GACGTGATGCGAGAGATGCGCTCGAGGAGAGTCGTCCCGGACGTTGTCGC
CCTCAACGCGGCCGTTGATGCTTTCGTCAGGTAA
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