mRNA_H-elongata_contig19595.5461.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE) HSP 1 Score: 124 bits (312), Expect = 8.100e-31 Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSL 411
WEA M++++ +D TG F + PEG + KW FSWK NE G ++ +KAR+VAR FS+ +DF ++ PS +S+K + VA E G++ HWDVKQ+++ K + +++ P G + SGKVVK+ R +Y L
Sbjct: 31 WEAAMKKDIDGHDKTGTFPKVKELPEGRKAIGSKWVFSWKTNEKGLIVDSKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVERALYGL 167
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.080e-28 Identity = 61/138 (44.20%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
WE M+EE + TG F+ + PEG V KW F+WK N+ G+++K KARLVAR FSQ+ VD+ + PS +S+K++ VANE + HWDVKQ+F K D D F++LP+G +S V K R +Y LK
Sbjct: 543 WEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHTVAKAERAIYGLK 680
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A0K8TZB9_BACLA (Copia protein n=3 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8TZB9_BACLA) HSP 1 Score: 102 bits (253), Expect = 1.870e-22 Identity = 47/137 (34.31%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
WE +Q+EL+S+ ++ + P+ N+V KW F+ K +E G +++ KARLVAR F+Q Y D+DE F SS +++ ++N+YG + H DVK +F+ + ++++P G V KL + +Y LK
Sbjct: 858 WEKAIQDELQSHSENNTWSLVAKPDKKNIVDCKWVFTIKQDECGNLVRYKARLVARGFTQEYLTDYDETFAPVARISSFRLMLALSNQYGLKMHHMDVKTAFLNGVLKEEIYMRVPEGLVHNDNTVCKLNKAIYGLK 994
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A034VP82_BACDO (Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP82_BACDO) HSP 1 Score: 101 bits (251), Expect = 3.480e-22 Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1
Query: 1 LWEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSG-GAAESGKVVKLTRTMYSLK 414
LWE +Q+EL S+ V + + P N+V KW FS K +E G +LK KARLVAR F+Q Y +D+DE F SS + + +N+Y H DVK +F+ + ++K+P G + KV KL + +Y LK
Sbjct: 869 LWEEAIQDELNSHFVNNTWCLVQRPMDKNIVDCKWVFSLKQDENGNLLKYKARLVARGFTQEYMMDYDETFAPVARISSFRFLLAFSNQYNLLIHHMDVKTAFLYGTLKDEIYMKVPKGLNQYDGNKVCKLNKAIYGLK 1007
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A182G9G9_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G9G9_AEDAL) HSP 1 Score: 94.7 bits (234), Expect = 5.260e-20 Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
W+ M+EE+ S + + + P G + +W+F K NEIGQ ++ KARLVA+ FSQ + DFDE+F +++ + +A+ G H D+K +++ + D ++K P G + ++G V L R++Y LK
Sbjct: 9 WQVAMEEEIASLNEHRTWELVPLPPGKKAIGCRWTFKKKENEIGQTVRYKARLVAQGFSQQFGSDFDEVFAPVVRQPTLRTMLTIASREGMLVKHLDIKTAYLYAELKEDIYMKQPPGFSEDNGLVCHLRRSIYGLK 145
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A438IM12_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IM12_VITVI) HSP 1 Score: 94.7 bits (234), Expect = 6.410e-20 Identity = 48/139 (34.53%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAA--ESGKVVKLTRTMYSLK 414
W+ +QEE+++ + G + PEG V KW F+ K+N G + + KA+LVA+ F+QSY +D++EIF +S+KV+ VA DVK +F+ + + + ++K+P SGKV KL +++Y LK
Sbjct: 297 WKTVVQEEIQALEKNGTWEISELPEGKRPVGCKWIFTMKHNPDGSINRFKAQLVAKGFTQSYGIDYEEIFAPVAKLNSIKVLLSVAVNLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYGLK 435
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 6.760e-20 Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
WEA M+ E+ +D TG FT + PEG + + +KAR+VAR FSQ +DF + PS +S+K + VA E G++ HWDVKQ+++ K + ++ P G + GKVVK+ R +Y LK
Sbjct: 936 WEAAMKTEIDGHDKTGTFTKVKELPEGRKAI----------------VDSKARMVARGFSQIPGIDFHHSSAACPSAASIKTVIAVATEKGKKLAHWDVKQAYIYAKLKGEICLRFPEGCGSMYGKVVKVERALYGLK 1057
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A182G7X1_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G7X1_AEDAL) HSP 1 Score: 93.6 bits (231), Expect = 1.670e-19 Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAA--ESGKVVKLTRTMYSLK 414
W + M +E S+ V G + + P G +V +W F K NE+G+V + KAR+VA+ +SQ Y VDFDE+F ++++ + +A G H DVK +++ D + +++ P G A + KV +L R++Y LK
Sbjct: 477 WRSAMDDEYHSHMVNGTWDLVDLPAGKKIVGSRWVFKAKQNEVGEVTRFKARIVAQGYSQRYGVDFDEVFAPVTRHATLRTLLALAGRDGLLLRHMDVKTAYLYGDIDEEVYMRQPPGYAVRGQEEKVCRLRRSIYGLK 615
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A2K3MYT4_TRIPR (Retrotransposon-related protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MYT4_TRIPR) HSP 1 Score: 90.9 bits (224), Expect = 1.500e-18 Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 1
Query: 4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAES--GKVVKLTRTMYSLK 414
W A MQEEL S + + + P + +KW F K N G+++K KARLVAR F Q +D+ E++ +++++ +A+ Y H DVK +F+ + + ++ P G ES KV KL + +Y LK
Sbjct: 831 WNAAMQEELHSIEKNNTWKLVELPPQKKAISVKWVFKLKRNPDGEIVKHKARLVARGFLQQEGIDYTEVYAPVARMETIRLVIAIASSYNLSLYHMDVKSAFLNGPLEEEVYVMQPPGFELESEKNKVYKLDKALYGLK 969
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.290e-18 Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 85 NVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
N + K F WK + G K KARLVAR Q +DF +++ + + SSV+++A +A E + H+D+ Q+FVR F DTF++LP G A SGK+V+L +++Y L+
Sbjct: 145 NCIKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPNVASSSVRMLAALACELDLELCHFDIDQAFVRAPFKEDTFMRLPEGCGALSGKIVQLNKSLYGLR 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19595.5461.1 >prot_H-elongata_contig19595.5461.1 ID=prot_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVback to top mRNA from alignment at H-elongata_contig19595:6026..6442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19595.5461.1 ID=mRNA_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig19595:6026..6442+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19595:6026..6442+ >mRNA_H-elongata_contig19595.5461.1 ID=mRNA_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig19595:6026..6442+ (Himanthalia elongata Himel1 dioecious)back to top |