mRNA_H-elongata_contig195821.5458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195821.5458.1
Unique NamemRNA_H-elongata_contig195821.5458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195821.5458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195821contigH-elongata_contig195821:435..1136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size666
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195821.5458.1prot_H-elongata_contig195821.5458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195821 460..846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.6324737-UTR-H-elongata_contig195821:434..4591622930111.6324737-UTR-H-elongata_contig195821:434..459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195821 435..459 +
1691679284.9401653-UTR-H-elongata_contig195821:434..4591691679284.9401653-UTR-H-elongata_contig195821:434..459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195821 435..459 +
1622930111.6776557-UTR-H-elongata_contig195821:846..11361622930111.6776557-UTR-H-elongata_contig195821:846..1136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195821 847..1136 +
1691679284.9784238-UTR-H-elongata_contig195821:846..11361691679284.9784238-UTR-H-elongata_contig195821:846..1136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195821 847..1136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.6492043-CDS-H-elongata_contig195821:459..5041622930111.6492043-CDS-H-elongata_contig195821:459..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 460..504 +
1691679284.95454-CDS-H-elongata_contig195821:459..5041691679284.95454-CDS-H-elongata_contig195821:459..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 460..504 +
1622930111.6643083-CDS-H-elongata_contig195821:540..8461622930111.6643083-CDS-H-elongata_contig195821:540..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 541..846 +
1691679284.9684665-CDS-H-elongata_contig195821:540..8461691679284.9684665-CDS-H-elongata_contig195821:540..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 541..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195821.5458.1

>prot_H-elongata_contig195821.5458.1 ID=prot_H-elongata_contig195821.5458.1|Name=mRNA_H-elongata_contig195821.5458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MAAAAIRDSVGHERRASAATPSPTAAASSLFDPRPSPEAYTPPLGRTPKR
GVVVAGGGGVCAIRAGVVTGCWASHRWGREYCRFSLWRRSQRFTWRGEGT
GTSEIVTPPFVELEFS*
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mRNA from alignment at H-elongata_contig195821:435..1136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195821.5458.1 ID=mRNA_H-elongata_contig195821.5458.1|Name=mRNA_H-elongata_contig195821.5458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig195821:435..1136+ (Himanthalia elongata Himel1 dioecious)
TGCCAATGCCACCTTTCTCGCCGCGATGGCCGCGGCGGCGATACGAGACT
CTGTGGGGCACGAACGGCGCGCTCCAAAGCAGAGTCGGGACCGTTCCCGC
TCCCAGGCTTCGGCGGCGACACCATCACCCACGGCGGCTGCGTCCTCGCT
CTTCGATCCACGTCCCTCTCCGGAAGCGTACACACCACCGCTGGGTAGGA
CTCCGAAGCGGGGCGTGGTGGTAGCGGGGGGTGGGGGTGTCTGCGCCATC
CGCGCTGGGGTGGTCACGGGCTGTTGGGCCTCTCACAGATGGGGCAGGGA
ATACTGCCGTTTCAGCCTATGGAGGAGGTCGCAACGCTTCACATGGAGAG
GGGAAGGGACGGGGACGAGCGAGATTGTGACACCCCCATTTGTCGAGCTG
GAATTTTCCTGACCCGACGGAAGGTTTGACGCGCTGAACGCCTTCTGCTG
GGGAAGAATCAAAGGGTTTTGCTGGCGGGGCGTACCCTGAGGGTCCCCGC
CGGCGAGACACGCACCAGAAAACTGTTGGCGCGCAACGTCTGCTCCGAGT
CCGAGTCCGCCCGCCCTCTGCCCTTGCCCTGCGCCCGACACCCACCCCAC
GCCCCCGCTCGTACCCTGATCCCTACGGTGGAAGAAGGCCGCCCGAGAAT
AGCTCGGGTGGCCGCCTCTAGCGATTTGCACGCCACAGACCTGCGCACCA
CC
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Coding sequence (CDS) from alignment at H-elongata_contig195821:435..1136+

>mRNA_H-elongata_contig195821.5458.1 ID=mRNA_H-elongata_contig195821.5458.1|Name=mRNA_H-elongata_contig195821.5458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig195821:435..1136+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGCGGCGGCGATACGAGACTCTGTGGGGCACGAACGGCGCATGGC
CGCGGCGGCGATACGAGACTCTGTGGGGCACGAACGGCGCGCTTCGGCGG
CGACACCATCACCCACGGCGGCTGCGTCCTCGCTCTTCGATCCACGTCCC
TCTCCGGAAGCGTACACACCACCGCTGGGTAGGACTCCGAAGCGGGGCGT
GGTGGTAGCGGGGGGTGGGGGTGTCTGCGCCATCCGCGCTGGGGTGGTCA
CGGGCTGTTGGGCCTCTCACAGATGGGGCAGGGAATACTGCCGTTTCAGC
CTATGGAGGAGGTCGCAACGCTTCACATGGAGAGGGGAAGGGACGGGGAC
GAGCGAGATTGTGACACCCCCATTTGTCGAGCTGGAATTTTCCTGAGCTT
CGGCGGCGACACCATCACCCACGGCGGCTGCGTCCTCGCTCTTCGATCCA
CGTCCCTCTCCGGAAGCGTACACACCACCGCTGGGTAGGACTCCGAAGCG
GGGCGTGGTGGTAGCGGGGGGTGGGGGTGTCTGCGCCATCCGCGCTGGGG
TGGTCACGGGCTGTTGGGCCTCTCACAGATGGGGCAGGGAATACTGCCGT
TTCAGCCTATGGAGGAGGTCGCAACGCTTCACATGGAGAGGGGAAGGGAC
GGGGACGAGCGAGATTGTGACACCCCCATTTGTCGAGCTGGAATTTTCCT
GA
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