mRNA_H-elongata_contig195578.5452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195578.5452.1
Unique NamemRNA_H-elongata_contig195578.5452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5KF82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF82_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.300e-11
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+ D  LSGT+G L +P GYD DD+    DVEDGV  EI  E S
Sbjct:   39 GEMNKWVKDGDTVLSGTIGALNVPAGYDTDDVSPVDDVEDGVGEEIEQESS 89
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BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.440e-9
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L  P GYD DD+    DVE+GV  +I  E +
Sbjct:   80 GEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESA 130
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BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.380e-9
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L+ P GYD DD+    DVE+GV   I  E +
Sbjct:  193 GEMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVSPVGDVEEGVGEPIQRESA 243
[Close]
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.380e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L  P GYD DD+    DVE+GV  +I  E +
Sbjct:  265 GEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESA 315
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BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L  P GYD DD+    DVE+GV  +I  E +
Sbjct:  307 GEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESA 357
[Close]
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L  P GYD DD+    DVE+GV  +I  E +
Sbjct:  478 GEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESA 528
[Close]
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L  P GYD DD+    DVE+GV  +I  E +
Sbjct:  589 GEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESA 639
[Close]
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.780e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WVK+RD  LSGT+G L  P GYD DD+    DVE+GV  +I  E +
Sbjct:  579 GEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVPPVGDVEEGVGEQIQQESA 629
[Close]
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.800e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 GEMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            GEMN+WV++RD  LSG +G L  P GYDKDD+    DVE+GV  +I  E +
Sbjct:  613 GEMNKWVRDRDAGLSGKIGNLQKPDGYDKDDVSPVGDVEEGVGEQIQQESA 663
[Close]
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Match: A0A6H5JZ34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ34_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.710e-8
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 EMNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS 153
            EMN+WVK+RD  LSGT+G L+ P GYD DD+    DVE+G   EI  E +
Sbjct:  209 EMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVLPVDDVEEGGGEEIQQESA 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195578.5452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KF82_9PHAE2.300e-1158.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH53_9PHAE2.440e-954.90Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS64_9PHAE5.380e-954.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ92_9PHAE1.380e-854.90DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE1.450e-854.90DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE1.490e-854.90DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE1.490e-854.90DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE2.780e-854.90DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
D8LNM6_ECTSI3.800e-852.94DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JZ34_9PHAE5.710e-854.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195578contigH-elongata_contig195578:870..1022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.047585-UTR-H-elongata_contig195578:869..8751622930111.047585-UTR-H-elongata_contig195578:869..875Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195578 870..875 +
1691679284.7084556-UTR-H-elongata_contig195578:869..8751691679284.7084556-UTR-H-elongata_contig195578:869..875Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195578 870..875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.0644846-CDS-H-elongata_contig195578:875..10221622930111.0644846-CDS-H-elongata_contig195578:875..1022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195578 876..1022 +
1691679284.7187505-CDS-H-elongata_contig195578:875..10221691679284.7187505-CDS-H-elongata_contig195578:875..1022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195578 876..1022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195578.5452.1prot_H-elongata_contig195578.5452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195578 876..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195578.5452.1

>prot_H-elongata_contig195578.5452.1 ID=prot_H-elongata_contig195578.5452.1|Name=mRNA_H-elongata_contig195578.5452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MNEWVKERDKELSGTMGVLVIPPGYDKDDICRAVDVEDGVIREIFLEGS
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mRNA from alignment at H-elongata_contig195578:870..1022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195578.5452.1 ID=mRNA_H-elongata_contig195578.5452.1|Name=mRNA_H-elongata_contig195578.5452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig195578:870..1022+ (Himanthalia elongata Himel1 dioecious)
GGCGAGATGAACGAGTGGGTGAAGGAGCGCGACAAGGAGCTGAGCGGTAC
GATGGGTGTCCTTGTGATCCCACCTGGGTATGACAAGGACGACATCTGTC
GAGCTGTTGATGTTGAGGACGGAGTGATACGCGAGATTTTCCTGGAAGGC
TCG
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Coding sequence (CDS) from alignment at H-elongata_contig195578:870..1022+

>mRNA_H-elongata_contig195578.5452.1 ID=mRNA_H-elongata_contig195578.5452.1|Name=mRNA_H-elongata_contig195578.5452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig195578:870..1022+ (Himanthalia elongata Himel1 dioecious)
ATGAACGAGTGGGTGAAGGAGCGCGACAAGGAGCTGAGCGGTACGATGGG
TGTCCTTGTGATCCCACCTGGGTATGACAAGGACGACATCTGTCGAGCTG
TTGATGTTGAGGACGGAGTGATACGCGAGATTTTCCTGGAAGGCTCGATG
AACGAGTGGGTGAAGGAGCGCGACAAGGAGCTGAGCGGTACGATGGGTGT
CCTTGTGATCCCACCTGGGTATGACAAGGACGACATCTGTCGAGCTGTTG
ATGTTGAGGACGGAGTGATACGCGAGATTTTCCTGGAAGGCTCG
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