mRNA_H-elongata_contig19506.5433.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 373 bits (958), Expect = 1.430e-124 Identity = 181/269 (67.29%), Postives = 216/269 (80.30%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSF----VNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
++FD+V+VYGN+Y+SDIHH +FG++TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN VYNNGYHGIIASKRCN VSIQGNEVYGG + SAGIFLHRSSD+A VK HDNGDAG+A LESFNA VS+N FENNKYG+RFSVG N F++N I N+ +YN Y+Y G+D+PDVV SGR QNNVFS+N G+ E IK+K++DG QF DN F + +RFDN+T +M GN+GLD E ELKV N ACFD +DSG+EPVC
Sbjct: 240 EVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 373 bits (958), Expect = 1.620e-124 Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSF----VNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
+IFD+V+VYGN+Y+SDIHH FG++TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN VYNNGYHGIIASKRCN VSIQGNEVYGG + SAGIFLHRSSD+A VK HDNGDAG+A LESFNA VS+N FENNKYG+R SVG N F++N+I N++KYN YTY GSD+PDVV SGR QNNVFS+N G+ E IK+K++DG QF DN F + +RFD++ VM GN+GLD + ELKV N +CFD SDSG+EPVC
Sbjct: 244 EIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 360 bits (923), Expect = 9.610e-123 Identity = 177/267 (66.29%), Postives = 210/267 (78.65%), Query Frame = 1
Query: 22 ILKQIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPV 822
I ++F++V+VYGNIY+SDIHHN+FGV+TYGHQQGDWR N M DN GYGFDPHDDSD+LT+HDN VY+NGYHGIIASKRCN VSIQGNEVYGG SAGIFL+RSSD+A VK HDNGDAG+A +ESFNA VSDNIFENNKYG+R SVG G N F+ NVI STKYN Y+Y G+D PDVV SGR ++N F EN IVG E +K+ +DG +F NSF + TIRFD++ VM GN+GL + +LKV NGA FD +D GFEP+
Sbjct: 1 IRHEVFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNKGYGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLT--DTKLKVHNGASFDKRADYGFEPI 265
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 360 bits (923), Expect = 9.430e-120 Identity = 178/264 (67.42%), Postives = 210/264 (79.55%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPV 822
++FD+V+VYGNIY+SDIHHN+FGV+TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN V+NNGYHGIIASKRCN VSIQGNEVYGG SAGIFLHRSSDN VK HDNGDAG+A LESFNA VSDN FENNKYG+R SVG G N F+ NVI S ++N ++Y G+D P+VVDSGR Q+NVF EN I+G E I LK++DG QF DN+F + IRF ++T +M GN+GL + LKV GA FD+SSD GFEP+
Sbjct: 211 ELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNTGLA--DSTLKVDRGATFDESSDHGFEPI 472
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 350 bits (897), Expect = 1.790e-115 Identity = 180/263 (68.44%), Postives = 210/263 (79.85%), Query Frame = 1
Query: 34 IFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPV 822
+F++V+VYGNIY+SDIHHN+FGV+TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN VY+NGYHGIIASKRCN VSIQGNEVYGG SAGIFLHR XXXX DAG+A +ESFNA VSDNIFENNKYGIRFSVGSG N F +NVI ST+Y+ Y+Y GSD PDVVDSGR Q+NVF EN I+G E IKL +DG QF DN+F + TTIRF+++ +M GN GL++ + LKV+NGA FD SSD GFEP+
Sbjct: 238 LFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSK--LKVVNGASFDASSDYGFEPI 498
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 333 bits (854), Expect = 2.210e-111 Identity = 167/265 (63.02%), Postives = 198/265 (74.72%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
++FDEV+VYGNIY+SDIHHNHFGV+TYGH+QGDWR N M N YGFDPHDDSD+LTIHDN VYNNG HGIIASKRCN G S GIFLHRSSD+A VK X DNGDAGMA +ESFNA VS+N FE+NKYG+R SVG N F+ NVI +S++YNVYTYEGSDDP VVDSGR Q+N+FS+N I G E IKL +DG +F DN+F + T+RF+++ +M GN+GL LKV GACFD SDS ++PVC
Sbjct: 63 EVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLG--SATLKVSKGACFDKKSDSDYKPVC 325
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE) HSP 1 Score: 308 bits (788), Expect = 7.820e-102 Identity = 150/261 (57.47%), Postives = 196/261 (75.10%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGF 813
+IFD+V+VYGNIY+S++HH +F V+TYGHQQGDWR N++ N+GYG+DPHDDSD+LTIHDNVVY+N +HGIIASKRCN+VSIQGN VYGG D SAGIFLHRSSD A VK + NGDAGMA LES NA +S NIFE NKYGIR SVG NF +N + N+++Y +YTY+GSD +V +GR Q+N+F N +VG + IKLK+SDG + +N F + F N+T V+ GN GL+ D E++++ ACF ++ ++
Sbjct: 29 EIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNVVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGVVEFSNTTENVVTGNVGLE-DATEVELVEPACFAETDEASL 288
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 310 bits (795), Expect = 4.290e-100 Identity = 159/265 (60.00%), Postives = 188/265 (70.94%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
++FD V+VYGNIY+SDIHHN+FGV+TYGH+QGDWR N M NT YGFDPHDDSD+LTIHDN VYNNG HGIIASKRCN G S GIFLHRSSD+A VK HDNGDAGMA +E+FNA VS+N FE+NKYGIR SVG N F+ N I S+KYNVYTY+GSD P VVDSGR Q+ G E +KL +DG +F DN+F + TIRF++ +M GNSGL LKV +G+CFD SDS ++PVC
Sbjct: 237 EVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLG--GASLKVTDGSCFDKKSDSAYKPVC 499
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI) HSP 1 Score: 306 bits (785), Expect = 1.810e-97 Identity = 149/261 (57.09%), Postives = 196/261 (75.10%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGF 813
++FD+V+VYGNIY+S++HH +F V+TYGHQQGDWR N + N+GYG+DPHDDSD+LTIHDNVVY+N +HGIIASKRCN+VSIQGN VYGG D SAGIFLHRSSD A VK + NGDAGMA LES NA +S NIFE NKYGIR SVG NF ++N + N+++Y +YTY+GSD +V +GR Q+N+F N +VG + IKLK+SDG + +N F + F N+T V+ GN GL+ D E++++ ACF ++ ++
Sbjct: 329 EVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGLVEFSNTTENVVTGNVGLE-DATEVELVEPACFAETDEASL 588
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 294 bits (752), Expect = 1.370e-93 Identity = 154/265 (58.11%), Postives = 182/265 (68.68%), Query Frame = 1
Query: 31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
++FDEV+VYGNIY+SDIHHNHFGV+TYGH+QGDWR N M N YGFDPHDDSD+LTIHDN V G S GIFLHRSSD+A VK XX NGDAGMA +ESFNA VS+N FE+NKYG+R SVG N F+ NVI +S+KYNVYTYEGSDDP VVDSGR Q+N+FS+N I G E IKL +DG +F DN+F T RF+++ +M GN+GL LKV GACFD SDS ++PVC
Sbjct: 240 EVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNKVXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLG--SATLKVSKGACFDKKSDSDYKPVC 502 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19506.5433.1 >prot_H-elongata_contig19506.5433.1 ID=prot_H-elongata_contig19506.5433.1|Name=mRNA_H-elongata_contig19506.5433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp MYIIDVCILKQIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRback to top mRNA from alignment at H-elongata_contig19506:3375..7035- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19506.5433.1 ID=mRNA_H-elongata_contig19506.5433.1|Name=mRNA_H-elongata_contig19506.5433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3661bp|location=Sequence derived from alignment at H-elongata_contig19506:3375..7035- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19506:3375..7035- >mRNA_H-elongata_contig19506.5433.1 ID=mRNA_H-elongata_contig19506.5433.1|Name=mRNA_H-elongata_contig19506.5433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig19506:3375..7035- (Himanthalia elongata Himel1 dioecious)back to top |