mRNA_H-elongata_contig195051.5432.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A6H5JP79_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP79_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.950e-29 Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = 1
Query: 4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHG--STWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL----------ELQESRMLLGPGER 351
++QGGH++ PGPLL NA+ L+RLQFPLG+NF+R+L Y+G S LPAF+ L+++M TV VLGT F VYAP+++VVLC FT KGYARVLRL+GL H DL + E R L+ G+R
Sbjct: 462 SLQGGHHTLPGPLLFNAQYLIRLQFPLGYNFMRMLRYYGTRSASVPALSLPAFQKLMNDMSTVPVLGTGFTVYAPLVLVVLCAFTYYKGYARVLRLVGLEHVDLVSMDDPGGNARVDEGRELVERGKR 589
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A835ZCR5_9STRA (LMBR1-like membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR5_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.430e-26 Identity = 60/127 (47.24%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 1 MAVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLE----------LQESRMLLGPGER 351
+A+ G H S PG L+ NA+ LVRLQFPLG+NF+ +L Y + AF L+S M V +LGT FN+YAP++MVVLCLFT+C GYAR+LR++G+ HEDL+ + E + L+ G+R
Sbjct: 410 LALNGPHQSLPGQLMFNAQYLVRLQFPLGYNFLTLLHYEKGM----LQHIAFNKLMSNMSVVPLLGTDFNIYAPLIMVVLCLFTACHGYARLLRMVGIEHEDLQCATDKEGQERMDEGKSLIERGKR 532
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A835Z6T2_9STRA (LMBR1-like membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T2_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.840e-25 Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1
Query: 4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL 309
A+ G H S P L+ NA+ LVRLQFPLG+NFV +L G + AF L+S M V +LGT FN+YAP+LMV+LCLFT+C+GYAR+LRL+G+ HEDL
Sbjct: 472 ALNGPHQSLPRQLIMNAQYLVRLQFPLGYNFVTLLGPEGGA----LQRIAFNKLMSNMAVVPLLGTDFNIYAPLLMVLLCLFTACRGYARLLRLVGIEHEDL 569
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S4D6Y9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6Y9_HETAK) HSP 1 Score: 90.5 bits (223), Expect = 3.100e-20 Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHE 303
++Q +S+P LL NA+ ++RLQFPLG++F+ +L +H +T + +LL+S M V +LGT+FN YAP++MVVLC FT GYAR+L LLG+ HE
Sbjct: 65 SLQAPRSSQPSALLFNAQQMIRLQFPLGYSFLLMLNFHRTT--------SLQLLMSNMTVVPILGTSFNHYAPLVMVVLCAFTLFNGYARLLGLLGVEHE 156
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: W7TPT9_9STRA (LMBR1-like membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPT9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.030e-18 Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query: 4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL 309
++QG H S GPLL NA+ L+RLQFPL +NF+ +L S + AF L+S M V +LG F+VYAP++MVVL FT +GYAR+LRL+G HEDL
Sbjct: 495 SLQGPHQSLAGPLLVNAQYLIRLQFPLAYNFLLMLRSPSS------KQTAFRHLMSNMAVVPLLGRGFSVYAPLMMVVLAAFTYFRGYARLLRLVGAYHEDL 590
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7R9Z808_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z808_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.410e-18 Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query: 40 LLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLELQESRMLL 336
L+ NA+ LVRLQFPLG+N++ +L Y S+ AF ++S+M+TV GT+F+VYAP+L++ LC FT C GYAR+L LLG+ HED L + L
Sbjct: 74 LVFNAQYLVRLQFPLGYNYLLMLKYDTSS-----TTCAFSRVMSDMETVPFFGTSFSVYAPLLILALCGFTLCNGYARLLSLLGVEHEDAILMGDKETL 167
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2V555_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V555_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 7.250e-18 Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = 1
Query: 4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL 309
++Q H S+ LL NA+ ++RLQFPLG+NF+ +L Y T A +LL++ M V +LGT+F++YAP ++++LC FT +GY R+LRLLGL ++ +
Sbjct: 27 SLQAPHQSQSVALLFNAQQMIRLQFPLGYNFLLMLKYSRPT--------ALQLLMNNMSVVPILGTSFSIYAPAILLLLCFFTLFQGYTRLLRLLGLEYDGM 120
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2A7R7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7R7_TRICV) HSP 1 Score: 88.2 bits (217), Expect = 1.090e-17 Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 16 GHNSRPG-PLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLELQESR 327
G PG L+ NA+ LVRLQFPLG+N++ +L Y T AF ++S M+TV GT+F+VYAP+L++ LC FT C GYAR+L LLG+ HED L R
Sbjct: 281 GCRQSPGVALIFNAQYLVRLQFPLGYNYLMMLKYD-----TASTTCAFSRVMSHMETVPFFGTSFSVYAPLLILALCGFTLCNGYARLLSLLGMEHEDAILMGDR 380
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2VYF6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYF6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.370e-17 Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 16 GHNSRPG-PLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHED 306
GH G LL +A+ LVRLQFPLG+N++ +L Y S+ AF L+S M TV LGT+F+VYAP+L++ LC FT C GY R++ LLG HED
Sbjct: 86 GHRQSHGVALLFSAQYLVRLQFPLGYNYLLMLKYDTSS-----TTCAFSNLMSNMSTVPFLGTSFSVYAPLLILCLCGFTLCNGYPRLVALLGFEHED 178
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2XKF6_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKF6_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.660e-17 Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 16 GHNSRPG-PLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLELQESRMLL 336
GHN G L+ NA+ LVRLQFPLG+N++ +L Y S+ AF ++S+M TV GT+F+VYAP++++ LC FT C GY R+L +LG+ HED L + L
Sbjct: 462 GHNQSIGVALVFNAQYLVRLQFPLGYNYLLMLKYDTSS-----TNCAFVHVMSDMSTVPFFGTSFSVYAPLMIIALCCFTLCNGYPRLLAVLGIEHEDAILMGDKETL 564 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig195051.5432.1 >prot_H-elongata_contig195051.5432.1 ID=prot_H-elongata_contig195051.5432.1|Name=mRNA_H-elongata_contig195051.5432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MAVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPback to top mRNA from alignment at H-elongata_contig195051:472..1087+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig195051.5432.1 ID=mRNA_H-elongata_contig195051.5432.1|Name=mRNA_H-elongata_contig195051.5432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=616bp|location=Sequence derived from alignment at H-elongata_contig195051:472..1087+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig195051:472..1087+ >mRNA_H-elongata_contig195051.5432.1 ID=mRNA_H-elongata_contig195051.5432.1|Name=mRNA_H-elongata_contig195051.5432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig195051:472..1087+ (Himanthalia elongata Himel1 dioecious)back to top |