mRNA_H-elongata_contig19502.5430.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI) HSP 1 Score: 130 bits (326), Expect = 8.260e-32 Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINPMVQLIRDYMDL 506
+TEGVLC+E+RIRLY DGAMSKLL+ LA DNP+V+LQGPF+IQKLVPPP HRN+VM+AAGTGINPMVQ IRDY+ L
Sbjct: 827 TTEGVLCIEMRIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINPMVQQIRDYLAL 904
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE) HSP 1 Score: 130 bits (326), Expect = 8.550e-32 Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINPMVQLIRDYMDL 506
+TEGVLC+E+RIRLY DGAMSKLL+ LA DNP+V+LQGPF+IQKLVPPP HRN+VM+AAGTGINPMVQ IRDY+ L
Sbjct: 1517 TTEGVLCIEMRIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINPMVQQIRDYLAL 1594
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.370e-30 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 3
Query: 282 GVLCVELRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINPMVQLIRDYMDL 506
GVLC+E+RIRLY DGAMSKLL+NLA DNP+VRLQ PF+IQKLVPPP HRN++M+AAGTGINPMVQ IRDY+ L
Sbjct: 1281 GVLCIEMRIRLYTDGAMSKLLENLAKDSDNPTVRLQAPFVIQKLVPPPAHRNVMMIAAGTGINPMVQQIRDYLAL 1355
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI) HSP 1 Score: 123 bits (308), Expect = 2.180e-29 Identity = 55/78 (70.51%), Postives = 69/78 (88.46%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINPMVQLIRDYMDL 506
++EGVLC+E+RIRLY DGAMS+LL+ L+ DNP+++LQGPFII KLVPPP HRN+VM+AAGTG+NPMVQ IRDY+ L
Sbjct: 1029 TSEGVLCIEMRIRLYHDGAMSQLLEKLSKDTDNPAIQLQGPFIITKLVPPPAHRNVVMIAAGTGVNPMVQQIRDYLAL 1106
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI) HSP 1 Score: 105 bits (261), Expect = 4.540e-23 Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINP 473
+TEGVLC+E+RIR+Y DGAMSKLL+ L+ DN +V+LQGPF++ KL PPP HRN++M+AAGTG+NP
Sbjct: 1196 TTEGVLCIEMRIRMYHDGAMSKLLEKLSKDTDNVAVQLQGPFLVNKLAPPPAHRNVIMIAAGTGVNP 1262
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.560e-22 Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINP 473
+TEG+LC+E+RIR+Y DGAMSKLL+ L+ DN +V+LQGPF+I KL PPP +RN++M+AAGTG+NP
Sbjct: 1202 TTEGILCIEMRIRMYHDGAMSKLLEKLSQDTDNAAVQLQGPFLINKLAPPPVYRNVIMIAAGTGVNP 1268
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: D8LN38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN38_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.730e-16 Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 3
Query: 300 LRIRLYPDGAMSKLLDNLASGRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINPMVQLIRDYMD 503
+ IR+Y DGAMSKLL+ L+ DNP+V+LQ PF+I+KL P P HR ++M+AAGT +NP Q MD
Sbjct: 1 MHIRMYHDGAMSKLLEKLSEDADNPTVQLQVPFLIEKLAPRPAHRKVIMIAAGTAVNPSKQNCFGLMD 68
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 8.600e-14 Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLASGR-------DNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGIN 470
S+EGVLCVE+RIRLYPDG M+ LL L R DN +V+LQG F+ L P P HRN VM+AAGTG N
Sbjct: 74 SSEGVLCVEMRIRLYPDGLMNGLLAQLIRVRGIGHQNLDNSAVQLQGAFLRHWLTPSPAHRNAVMIAAGTGPN 146
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 2.300e-10 Identity = 48/147 (32.65%), Postives = 58/147 (39.46%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNL------------------------ASGR--------------------------------------------------------DNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINP 473
S+EGVLCVE+RIRLYPDG MS LL L AS + DNP+V+LQGPF+ +L PPP HRN+VM+AAGTG+NP
Sbjct: 487 SSEGVLCVEMRIRLYPDGLMSGLLARLIKVVPTVAITGHCSTHKNHKLFISASNKLSRSPIGDRPTNRSTDGSTYALDRLFWEERSIRVSPTIRAPCSCCGWVRGGGHQNLDNPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNP 633
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.500e-9 Identity = 45/147 (30.61%), Postives = 54/147 (36.73%), Query Frame = 3
Query: 273 STEGVLCVELRIRLYPDGAMSKLLDNLAS--------------------------------------------------------------------------------GRDNPSVRLQGPFIIQKLVPPPFHRNIVMVAAGTGINP 473
S+EGVLCVE+R RLYPDG MS LL L DNP+V+LQGPF+ +L PPP HRN+VM+AAGTG+NP
Sbjct: 666 SSEGVLCVEMRARLYPDGLMSGLLAQLVKVVPTVAIFCHSSTHKHHHMFISVSNKLSQSPTGDRPTNGSTDGSTYAFDRLFWEERSIRETPTIRAPCSFCGWVRGGGHQNLDNPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNP 812 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19502.5430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19502.5430.1 >prot_H-elongata_contig19502.5430.1 ID=prot_H-elongata_contig19502.5430.1|Name=mRNA_H-elongata_contig19502.5430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp RLVAFSNSGNWNSGSLLSKRPVYRYVFQCPGSAQALAQAISGVCYVNMQAback to top mRNA from alignment at H-elongata_contig19502:163..2639- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19502.5430.1 ID=mRNA_H-elongata_contig19502.5430.1|Name=mRNA_H-elongata_contig19502.5430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2477bp|location=Sequence derived from alignment at H-elongata_contig19502:163..2639- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19502:163..2639- >mRNA_H-elongata_contig19502.5430.1 ID=mRNA_H-elongata_contig19502.5430.1|Name=mRNA_H-elongata_contig19502.5430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig19502:163..2639- (Himanthalia elongata Himel1 dioecious)back to top |