mRNA_H-elongata_contig19494.5426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19494.5426.1
Unique NamemRNA_H-elongata_contig19494.5426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: D8LKY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY2_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.160e-38
Identity = 93/217 (42.86%), Postives = 127/217 (58.53%), Query Frame = 1 
Query:    7 LKQESHARLAAKVQRLAMIDTNLEMKVAATTRAINTFMAEKGSTNAAKVD---------------SMVKILKQLNAKVSSDMQGAEDKAVETKRYKDLMKKITPASQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVS-GGSGASCPVAGCFKKVSNVDLEPDKDMQRRLRIEKQSQPQEHGYDAEEVEDDTIGETEI 609
            L +E H +LA +VQ+LA  +  LE+K AAT  A+ T  AE     A                    M   L+ + +K+SS M+GA++KA+E+K YKDLMK I   +  ++DDI++     VSL CP+T++T VDPV++K+C HTYGK AI +HIRV+    G SCPVAGC  KV   DL PDKDM RRL+IE+ +Q            DD + E+ I
Sbjct:  189 LDKEVHQKLAEQVQQLAAQNAKLEIKRAATASAMKTLAAEVDKKTAXXXXXXXXXXXXXXXXEEMDMAYFLESMTSKLSSAMEGADEKALESKEYKDLMKMIVATAMDDDDDIIVPNDNRVSLKCPLTSSTFVDPVKNKVCGHTYGKKAILNHIRVAKNDGGVSCPVAGCSNKVVKADLVPDKDMMRRLKIEENTQHXXXXXXXXXXXDDDVAESFI 405
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A1Y1XZ45_9FUNG (SP-RING-type domain-containing protein (Fragment) n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XZ45_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 1.570e-15
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  283 GEEDDIVMTLS-ETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRLRIEKQSQPQE 555
            GE+D+ +M +S  TV+L CPIT T + DPV S++CKH++ K AI +HIR +  + A+CPV+GC K +   DL+P+K + RR++   QSQ +E
Sbjct:   98 GEQDEDIMVMSTSTVTLKCPITTTYLEDPVTSQVCKHSFSKEAIVTHIRRTQTTAAACPVSGCNKFIKISDLKPNKSLARRVKQHLQSQGEE 189
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A0D0DLV3_9AGAM (Unplaced genomic scaffold scaffold_731, whole genome shotgun sequence n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0DLV3_9AGAM)

HSP 1 Score: 79.3 bits (194), Expect = 1.550e-12
Identity = 40/111 (36.04%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:  250 DLMKKITPASQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRLRIE-KQSQPQEHGYDAEEV 579
            DL+ +       +EDD +     T    CPIT  T+ +P+ S+IC H+Y K AI+ ++R +G +G SCP +GC K+++   L+PDKD+++R+++  ++ Q +    DA+EV
Sbjct:  233 DLVPRAEEGDVSDEDDDLEIGGVTQDYKCPITLMTLDNPMTSQICGHSYSKAAIQDYLRRAGMNGKSCPASGCHKQITMDQLQPDKDLEKRVKLAARRQQRRNEDSDADEV 343
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A0C3EDF4_9AGAM (SP-RING-type domain-containing protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3EDF4_9AGAM)

HSP 1 Score: 73.6 bits (179), Expect = 4.560e-11
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:  277 SQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRLRI-EKQSQPQEHGYDAEEV 579
            +  +EDD+ +    T    CPI+ TT+V+P+ SK+C H++    I+ +++ +G  G SCP AGC K+++   L+ DKD+++++RI E+  Q QE   D  EV
Sbjct:  150 ASDDEDDLEVG-GVTQDYKCPISLTTLVNPMTSKVCGHSFSGAVIQDYLKKAGKDGISCPAAGCTKRLTMAALKHDKDLEKKVRIAERNRQRQEEDSDDAEV 250
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A0C9ZXY2_9AGAM (SP-RING-type domain-containing protein n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9ZXY2_9AGAM)

HSP 1 Score: 72.4 bits (176), Expect = 2.970e-10
Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  256 MKKITPASQGE---EDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRLRIE-KQSQPQEHGYDAEEV 579
            +K+  P   G+   +DD +     T    CPIT TT+V+P+ SK+C H++   AI+ +++ +   G +CP AGC K+++   L PDKD++++++I  +Q Q Q    D  EV
Sbjct:  228 IKEFIPREHGDISDDDDDLEIGGVTQDYKCPITLTTLVNPMTSKVCGHSFSGAAIQEYLQKARADGIACPAAGCKKRLTMAVLRPDKDLEKKIKIAARQRQRQAEDSDDGEV 339
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A2T7PFK4_POMCA (E3 SUMO-protein ligase NSE2 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PFK4_POMCA)

HSP 1 Score: 69.7 bits (169), Expect = 6.370e-10
Identity = 40/106 (37.74%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:  217 EDKAVETKRYKDLMKKITPASQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKK--VSNVDLEPDKDMQRRLR 528
            E K ++++   ++   +  ++  +EDDI MT +  V+  CP T   +VDPVR+KICKHTY KV I  +I+  G   A CPV+GC     +++ DLE +++M+R ++
Sbjct:  120 EQKILDSQNPGNVPTAVGSSASMQEDDIEMTQAM-VNTKCPYTGQEMVDPVRNKICKHTYDKVGILEYIKRRGRK-ARCPVSGCSNSQAITSADLEENREMRRHIQ 223
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A2G5B5Q6_COERN (SP-RING-type domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B5Q6_COERN)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-9
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  277 SQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRL 525
            S   ++D+V+  +  V+  CP+TAT +VDPV SKICKH++ + AI  +IR  GG+ A CPV GC  ++   DL  DK ++R +
Sbjct:  157 SDDSDEDLVIEGAR-VNYRCPVTATWLVDPVTSKICKHSFSREAILDYIRAHGGACA-CPVDGCSNRIKPQDLYADKVLERNV 237
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A1S8W371_9FUNG (SP-RING-type domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W371_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 2.390e-9
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  274 ASQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRL 525
            A+  E++D+VMT ++TVS  CPIT   +V+PV S++CKH++     +S    SG +   CP+AGC K +   DL+PD  ++R++
Sbjct:  154 AAANEDEDVVMT-TQTVSYKCPITLQIMVNPVTSRVCKHSFSDAIFQSF--TSGVAFIVCPIAGCDKNIRAADLKPDAALKRKV 234
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A0C3NCT6_PISTI (SP-RING-type domain-containing protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3NCT6_PISTI)

HSP 1 Score: 68.9 bits (167), Expect = 4.100e-9
Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  334 CPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRLRI 531
            CPIT TT+V+P+ SK+C H++   AI+ +++ +   G +CP AGC K+++   L PDKD++++++I
Sbjct:  257 CPITLTTLVNPMTSKVCGHSFSGDAIQEYLQRARADGIACPAAGCKKRLTMAVLRPDKDLEKKIKI 322
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BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Match: A0A433PWK6_9FUNG (Zinc-finger of the MIZ type in Nse subunit-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PWK6_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 7.750e-9
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  250 DLMKKITPASQGEEDDIVMTLSETVSLICPITATTIVDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDKDMQRRLR 528
            ++M  + P    + +D ++  S+ VSL CPIT T +V+PV SKICKH++   A+   I   GG    CP +GC K ++  DL P+K + R+++
Sbjct:  198 EVMPSLIPRPTDDSEDDIVIGSQRVSLKCPITQTLLVNPVTSKICKHSFSGAAVTDMINRQGGK-IRCPESGCEKILTLNDLAPNKGLARKVK 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19494.5426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKY2_ECTSI1.160e-3842.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1XZ45_9FUNG1.570e-1546.74SP-RING-type domain-containing protein (Fragment) ... [more]
A0A0D0DLV3_9AGAM1.550e-1236.04Unplaced genomic scaffold scaffold_731, whole geno... [more]
A0A0C3EDF4_9AGAM4.560e-1137.25SP-RING-type domain-containing protein n=1 Tax=Scl... [more]
A0A0C9ZXY2_9AGAM2.970e-1034.82SP-RING-type domain-containing protein n=1 Tax=Pis... [more]
A0A2T7PFK4_POMCA6.370e-1037.74E3 SUMO-protein ligase NSE2 n=2 Tax=Pomacea canali... [more]
A0A2G5B5Q6_COERN1.800e-943.37SP-RING-type domain-containing protein n=1 Tax=Coe... [more]
A0A1S8W371_9FUNG2.390e-940.48SP-RING-type domain-containing protein n=1 Tax=Bat... [more]
A0A0C3NCT6_PISTI4.100e-940.91SP-RING-type domain-containing protein n=1 Tax=Pis... [more]
A0A433PWK6_9FUNG7.750e-937.63Zinc-finger of the MIZ type in Nse subunit-domain-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19494contigH-elongata_contig19494:2826..5737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog2880.D8LKY2
Preferred nameNSMCE2
GOsGO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006469,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010015,GO:0010073,GO:0010075,GO:0010082,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010605,GO:0010638,GO:0010646,GO:0010647,GO:0010948,GO:0010965,GO:0012505,GO:0016043,GO:0016604,GO:0016605,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019207,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019887,GO:0022402,GO:0022622,GO:0023051,GO:0023056,GO:0030071,GO:0030234,GO:0030291,GO:0030915,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031331,GO:0031399,GO:0031400,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034641,GO:0036211,GO:0040008,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045876,GO:0045931,GO:0045934,GO:0045936,GO:0046483,GO:0048364,GO:0048507,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048638,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051276,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060249,GO:0060250,GO:0060255,GO:0061659,GO:0061665,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080036,GO:0080038,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0090398,GO:0097240,GO:0098687,GO:0098772,GO:0099402,GO:0106068,GO:0140096,GO:1901360,GO:1901564,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:1990683,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000280,GO:2001252
EggNOG free text desc.SUMO transferase activity
EggNOG OGsKOG2979@1,KOG2979@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-11_006000.1
Exons6
Model size1388
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19494.5426.1prot_H-elongata_contig19494.5426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19494 3602..5680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930108.3721287-UTR-H-elongata_contig19494:2825..36011622930108.3721287-UTR-H-elongata_contig19494:2825..3601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19494 2826..3601 -
1691679283.4324105-UTR-H-elongata_contig19494:2825..36011691679283.4324105-UTR-H-elongata_contig19494:2825..3601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19494 2826..3601 -
1622930108.4841585-UTR-H-elongata_contig19494:5680..57371622930108.4841585-UTR-H-elongata_contig19494:5680..5737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19494 5681..5737 -
1691679283.5129833-UTR-H-elongata_contig19494:5680..57371691679283.5129833-UTR-H-elongata_contig19494:5680..5737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19494 5681..5737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930108.3917527-CDS-H-elongata_contig19494:3601..36911622930108.3917527-CDS-H-elongata_contig19494:3601..3691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 3602..3691 -
1691679283.4429588-CDS-H-elongata_contig19494:3601..36911691679283.4429588-CDS-H-elongata_contig19494:3601..3691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 3602..3691 -
1622930108.4076855-CDS-H-elongata_contig19494:4176..43201622930108.4076855-CDS-H-elongata_contig19494:4176..4320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 4177..4320 -
1691679283.452609-CDS-H-elongata_contig19494:4176..43201691679283.452609-CDS-H-elongata_contig19494:4176..4320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 4177..4320 -
1622930108.422338-CDS-H-elongata_contig19494:4781..48891622930108.422338-CDS-H-elongata_contig19494:4781..4889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 4782..4889 -
1691679283.463513-CDS-H-elongata_contig19494:4781..48891691679283.463513-CDS-H-elongata_contig19494:4781..4889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 4782..4889 -
1622930108.4363685-CDS-H-elongata_contig19494:5097..52171622930108.4363685-CDS-H-elongata_contig19494:5097..5217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 5098..5217 -
1691679283.4825306-CDS-H-elongata_contig19494:5097..52171691679283.4825306-CDS-H-elongata_contig19494:5097..5217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 5098..5217 -
1622930108.4537196-CDS-H-elongata_contig19494:5388..54541622930108.4537196-CDS-H-elongata_contig19494:5388..5454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 5389..5454 -
1691679283.4932072-CDS-H-elongata_contig19494:5388..54541691679283.4932072-CDS-H-elongata_contig19494:5388..5454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 5389..5454 -
1622930108.4688296-CDS-H-elongata_contig19494:5653..56801622930108.4688296-CDS-H-elongata_contig19494:5653..5680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 5654..5680 -
1691679283.5039334-CDS-H-elongata_contig19494:5653..56801691679283.5039334-CDS-H-elongata_contig19494:5653..5680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 5654..5680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19494.5426.1

>prot_H-elongata_contig19494.5426.1 ID=prot_H-elongata_contig19494.5426.1|Name=mRNA_H-elongata_contig19494.5426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MIDTNLEMKVAATTRAINTFMAEKGSTNAAKVDSMVKILKQLNAKVSSDM
QGAEDKAVETKRYKDLMKKITPASQGEEDDIVMTLSETVSLICPITATTI
VDPVRSKICKHTYGKVAIRSHIRVSGGSGASCPVAGCFKKVSNVDLEPDK
DMQRRLRIEKQSQPQEHGYDAEEVEDDTIGETEI*
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mRNA from alignment at H-elongata_contig19494:2826..5737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19494.5426.1 ID=mRNA_H-elongata_contig19494.5426.1|Name=mRNA_H-elongata_contig19494.5426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2912bp|location=Sequence derived from alignment at H-elongata_contig19494:2826..5737- (Himanthalia elongata Himel1 dioecious)
AGCATCCTCAAGCAGGAATCACACGCGCGGTTGGCCGCCAAGGTGCAGCG
TTTGGCGATGATAGACACCAACCTCGAAATGAAGGCGAGTTACTCCCTGA
CATTAGCATACCGCGCAGTATCTAGTGGTACAATACCGGTATATATATAT
ATATATATATATATATATATTTATTTTTCCGTCTGCCACCATGGGTTAAT
CGATTTGATCTTGCAACGCCAGCGAGCGCTTGGTGGCCATACTATAAGAC
CGCCTTATCATGTCCACGCGTTTCATGTGACAGGTGGCTGCAACGACTCG
TGCGATAAACACTTTCATGGCGGAGAAAGGCTCCACGAATGCCGCAAAGG
TTTGACCCACCATTCGTTCTGGTCATGCCGTACGCCACCACCGTGTTTTG
AAGCGGTGCGCGCGGCTCTGTTTCGACCCGCTCAAATGTCATGGAACTTT
TCTGCCTTCAGCTGCGTGCGTCTTGTCCTGAAGTATTCAGAATATTTCCC
TTCTGTCACAAACGCTGCAGGTGGACTCTATGGTCAAAATACTGAAGCAG
CTGAATGCCAAGGTGTCTTCGGACATGCAAGGGGCGGAGGACAAGGCGGT
CGAGACGAAGCGCTACAAGGATCTGATGAAGAAAATCACGGTGGGTGGCG
ACCCTATGTCGTGCTCGGTGAAAGTCTCGAGGCTTCCGTGTCAGAAGCAA
TATAAACTGAGATCGACAAGAACCACGCGAAGAACAAGGATTGGGTTTCC
ATCGGATTGTCTGCATGTTTCGTTGACGGAGGCATAAAGAGTTTGATATT
TTAAGAGTATTTAACGACCTACGTATGTGTGCGTGTTCGCACGAACAGCC
GGCGTCACAAGGCGAAGAAGACGATATCGTCATGACATTGAGCGAGACCG
TGAGCCTCATCTGCCCCATCACTGCCACCACTATCGTCGACCCAGTCAGG
AGCAAGGTTGGTGGAATCAGGAAGGAGGCTTGCTTAAGCGCTCATAATTC
GTAGAGAGAACGGGCACCATTTGAACCCTTTCGATCACAAAACGTGCCCC
TTCCCTCCCTGCAATTGCGTTTTTTTTTCCATCTGAAGGACAATGACCGG
TGATACGTGGAGTGGATAAAATTTTATATTCCCCTCCCCAACCCAGGGGC
GGTTAAGCAACTTCCCTCAATATACACATGCTTATCGTTGGGTTACTCAG
TTTTGCCCTGCTCTCGGGCAGTAAAGGTCGATTCCACATCTTCGCAGCGA
TTGAAGTATCTCTCGGTTCGGTGCGCGTGTTGCGTGTGCTTTGACGGCCA
CCTTTCACCACCTCGGGGCCCCTGAACGTGGGGTTGATTCTTGACCTTAA
GGCGGCTCAAACGTCGTGAATAGCATTTGCGCATTTCAAAACTTATCCCT
TATGTGTGACGTCGCAGATTTGCAAACACACGTATGGGAAGGTTGCCATC
AGATCGCACATCAGGGTCAGCGGGGGGTCTGGTGCTTCGTGCCCTGTCGC
GGGATGTTTCAAAAAGGTTTCCAATGTCGACCTGGAGCCCGACAAGGATA
TGCAGAGAAGGGTGAGCGCAGGTTTCGCTGAGAGACGAATCCAACTGTAG
CGGGGAGGGAATTGACACGTCCCTCTGATATTAACAGAGGGTAGGTTAAA
TCCGTTCCCCTCTCTCGGGGGACAAAACATGTCCCATCCCTTCTGCTGCG
GTAATCATGTACCCCGAATGAAGCGTTGAGACCGGGGATACAACGATATG
ATCCCCGGCCCGGAAGGGACAATTTTTCACCTTCCACTCCCCAAACCGGG
GACGCATGTGTTACTTTCACCCCCAATCTTTGGATTCGCCCTGAGATGTT
GCCCCGCTGCCACCGAAGCTAAGCTCGTGTCCAGTGGGATCATGATCGCT
TGCCCGAGTGCCGTGTGTTCCAGCCCCACGTTCCTAACACGCCTGTTCTT
TTGAAAGGTGAGATGGCTTGGCGAACCTCACACGCTCACGTTTTCTTCGT
GCCTTTTTACACAACCGCCCTCTTACACGTTCGCGGGCAATCGCAGCTAC
GGATAGAGAAGCAATCACAGCCGCAAGAGCATGGGTACGACGCGGAAGAG
GTAGAGGATGACACGATCGGGGAGACAGAAATCTGAAGTAGGGCATTTTG
TCGTCCCGCATTATGTCTACCTACCGCCTTTGTCTTAACTGTCCCATGCT
TCAAGGGATCGTGGTGGGAAAGGGGCACATCGCCGCAGCAGCGGTTTTAG
CTGGAGCTATTTTGTACTCGGGGCAAATTGCTGTAGATTGCACTCGGGGA
CTGTAGATCGAATCACTTGCGCTTTTCTAGGACTACCAAGGTCCTTTACC
TTGTCAACCAACACACGCGAGAGCAGCACATACTTTCGTCGCTAGCTTGT
TATTAAATGCAGCAGCGCGCAACGTCCGCCACTTTAGATCCCTACATAAA
ATACTTACCTTTAGCGCCCCACGTCCGTGGGGCGGCCTCATCACCGGCTT
GGGGGTATCCATAAAAAAAATCGAACGGTAATCATATCTGAACACGTGTG
CAACCAGATCCGCGAAGGCAGTACTGTACGTACTTTCGTCGCTAGCTTGT
CTGTTGTCATAACAAAAACACGGGTCGCAATAAATGGCCGACCGACCCTA
CAACCCTAAAAGCATATTTTCAGACAACCAATTGCTGGGGGGGGGGGTTA
TGGTGATAAAAGTAAGGTGTTCTCTGCAAGAAGGATCGTCAACGAGAAGC
TTACAGTTTGTTGTTTTAGGCCTGTAACACCGGACCGGCTTTAGTAGCGT
CTGTAACACCGGCTTTAGTAGCGTAAACAATAGATCGAAGGCATGACCCG
ATGAGGCTCAACACGTGTTTCGTACACAAATATCGCTATCATGGCATAAA
CAAATAAACCCT
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Coding sequence (CDS) from alignment at H-elongata_contig19494:2826..5737-

>mRNA_H-elongata_contig19494.5426.1 ID=mRNA_H-elongata_contig19494.5426.1|Name=mRNA_H-elongata_contig19494.5426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig19494:2826..5737- (Himanthalia elongata Himel1 dioecious)
ATGATAGACACCAACCTCGAAATGAAGATGATAGACACCAACCTCGAAAT
GAAGGTGGCTGCAACGACTCGTGCGATAAACACTTTCATGGCGGAGAAAG
GCTCCACGAATGCCGCAAAGGTGGCTGCAACGACTCGTGCGATAAACACT
TTCATGGCGGAGAAAGGCTCCACGAATGCCGCAAAGGTGGACTCTATGGT
CAAAATACTGAAGCAGCTGAATGCCAAGGTGTCTTCGGACATGCAAGGGG
CGGAGGACAAGGCGGTCGAGACGAAGCGCTACAAGGATCTGATGAAGAAA
ATCACGGTGGACTCTATGGTCAAAATACTGAAGCAGCTGAATGCCAAGGT
GTCTTCGGACATGCAAGGGGCGGAGGACAAGGCGGTCGAGACGAAGCGCT
ACAAGGATCTGATGAAGAAAATCACGCCGGCGTCACAAGGCGAAGAAGAC
GATATCGTCATGACATTGAGCGAGACCGTGAGCCTCATCTGCCCCATCAC
TGCCACCACTATCGTCGACCCAGTCAGGAGCAAGCCGGCGTCACAAGGCG
AAGAAGACGATATCGTCATGACATTGAGCGAGACCGTGAGCCTCATCTGC
CCCATCACTGCCACCACTATCGTCGACCCAGTCAGGAGCAAGATTTGCAA
ACACACGTATGGGAAGGTTGCCATCAGATCGCACATCAGGGTCAGCGGGG
GGTCTGGTGCTTCGTGCCCTGTCGCGGGATGTTTCAAAAAGGTTTCCAAT
GTCGACCTGGAGCCCGACAAGGATATGCAGAGAAGGATTTGCAAACACAC
GTATGGGAAGGTTGCCATCAGATCGCACATCAGGGTCAGCGGGGGGTCTG
GTGCTTCGTGCCCTGTCGCGGGATGTTTCAAAAAGGTTTCCAATGTCGAC
CTGGAGCCCGACAAGGATATGCAGAGAAGGCTACGGATAGAGAAGCAATC
ACAGCCGCAAGAGCATGGGTACGACGCGGAAGAGGTAGAGGATGACACGA
TCGGGGAGACAGAAATCTGACTACGGATAGAGAAGCAATCACAGCCGCAA
GAGCATGGGTACGACGCGGAAGAGGTAGAGGATGACACGATCGGGGAGAC
AGAAATCTGA
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