mRNA_H-elongata_contig194876.5423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194876.5423.1
Unique NamemRNA_H-elongata_contig194876.5423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.710e-29
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 324
            V +  +WHRR+GH+H +SLDILRK  G  + +   +S CDVCAVG ++Q  HPK A++  +RPFQL   D MGPF+P A+GG+ Y+ K  D++ KW  V+L+  K
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEK 367
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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.280e-27
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 324
            V +  +WHRR+GH++++SLDILRK     +     V DC  CA+GK+ Q  HPK A + V RPFQL + D +GPFTP A+GG+KY +K  D+ TKW  + L+  K
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDK 627
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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.120e-26
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 324
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
[Close]
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.140e-26
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 324
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796
[Close]
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.140e-26
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 324
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
[Close]
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.340e-25
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKW 297
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136
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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.460e-25
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKEQA 333
            V +  +WHRR+GH++ +SLD+LRK     + +   V+DC VC +GK+ Q  HPK   + V RPFQ    D +GPFTP A+GG+KY +K  D+ TKW  + L+  K+QA
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM--KDQA 388
[Close]
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.810e-24
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTK 324
            + +   WHRRLGHL+A+SLDILRK  GT + +   +S C VC + K +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 146
[Close]
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.070e-23
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   10 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTK 324
            + +   WHRRLGHL+A+SL+ILRK  GT + +   +S C VC +GK +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K
Sbjct:  303 LVSADTWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLLRNK 410
[Close]
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.910e-23
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    7 AVANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLL 315
            A  N   WHR L HL+ +S+++LRK+    + F   ++ CD+CA+ K++QLAHP+  N +   P QL Y D MG  TP+A GG+ YVSK TD Y+    +YLL
Sbjct:  304 ATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLL 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE4.710e-2948.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.280e-2747.62Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJN3_9PHAE1.120e-2645.71Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.140e-2645.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.140e-2645.71Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KNH5_9PHAE1.340e-2546.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE2.460e-2545.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE4.810e-2447.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KP59_9PHAE1.070e-2347.22CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYD3_9PHAE1.910e-2344.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194876contigH-elongata_contig194876:28..363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.6
Seed ortholog evalue6.8e-11
Seed eggNOG ortholog4565.Traes_3B_D5F0C4EDC.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930108.0547676-CDS-H-elongata_contig194876:27..3631622930108.0547676-CDS-H-elongata_contig194876:27..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194876 28..363 -
1691679283.3022418-CDS-H-elongata_contig194876:27..3631691679283.3022418-CDS-H-elongata_contig194876:27..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194876 28..363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194876.5423.1prot_H-elongata_contig194876.5423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194876 28..363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194876.5423.1

>prot_H-elongata_contig194876.5423.1 ID=prot_H-elongata_contig194876.5423.1|Name=mRNA_H-elongata_contig194876.5423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MNAVANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKA
QQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWT
AVYLLTTKEQAL
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mRNA from alignment at H-elongata_contig194876:28..363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194876.5423.1 ID=mRNA_H-elongata_contig194876.5423.1|Name=mRNA_H-elongata_contig194876.5423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig194876:28..363- (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGCCAATGTCCAGGTGTGGCACCGACGGTTGGGCCATCT
CCATGCGCAGAGCTTAGACATTCTACGCAAGCGATACGGCACTGACATCA
TCTTCGAGCGGGGCGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCT
CAACAGCTGGCTCATCCTAAAACGGCCAATCACAAGGTCAACCGGCCTTT
CCAGCTGTGCTACGGAGACTTCATGGGGCCCTTCACGCCTGTGGCCATAG
GCGGCTACAAATACGTCAGCAAAATTACCGACGAGTACACAAAGTGGACC
GCCGTCTACTTGTTGACTACAAAGGAGCAAGCTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig194876:28..363-

>mRNA_H-elongata_contig194876.5423.1 ID=mRNA_H-elongata_contig194876.5423.1|Name=mRNA_H-elongata_contig194876.5423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig194876:28..363- (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGCCAATGTCCAGGTGTGGCACCGACGGTTGGGCCATCT
CCATGCGCAGAGCTTAGACATTCTACGCAAGCGATACGGCACTGACATCA
TCTTCGAGCGGGGCGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCT
CAACAGCTGGCTCATCCTAAAACGGCCAATCACAAGGTCAACCGGCCTTT
CCAGCTGTGCTACGGAGACTTCATGGGGCCCTTCACGCCTGTGGCCATAG
GCGGCTACAAATACGTCAGCAAAATTACCGACGAGTACACAAAGTGGACC
GCCGTCTACTTGTTGACTACAAAGGAGCAAGCTCTTATGAACGCAGTCGC
CAATGTCCAGGTGTGGCACCGACGGTTGGGCCATCTCCATGCGCAGAGCT
TAGACATTCTACGCAAGCGATACGGCACTGACATCATCTTCGAGCGGGGC
GTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCTCAACAGCTGGCTCA
TCCTAAAACGGCCAATCACAAGGTCAACCGGCCTTTCCAGCTGTGCTACG
GAGACTTCATGGGGCCCTTCACGCCTGTGGCCATAGGCGGCTACAAATAC
GTCAGCAAAATTACCGACGAGTACACAAAGTGGACCGCCGTCTACTTGTT
GACTACAAAGGAGCAAGCTCTT
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