mRNA_H-elongata_contig194838.5420.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194838.5420.1
Unique NamemRNA_H-elongata_contig194838.5420.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.240e-25
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCECIEVAVMKRILHYAGHVARVDDERL 450
            GQ+Y+Q   F YL   ++  GD+  EI  R+  AW C  +Y R ++D P      K+R L+AE +E +LYGC+TW+   G +  LR +H  +LLR +      R    Y+ LSY ++L R +C+ +E  + ++ L +AG + R  D RL
Sbjct:  348 GQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGY---KRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRL 493          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.730e-25
Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL  TIS+ G    EI  R+  AW C+ + S  +YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE  V KR L +AG V R++D RL
Sbjct:   42 GQTYKQTDRFVYLERTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVEHLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRL 188          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.300e-25
Identity = 64/151 (42.38%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 MGQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDC-ECIEVAVMKRILHYAGHVARVDDERL 450
            +G  + Q   FVYL   I   G +  EI  R   A  CF + S+ +YD P   +  KVR L+AEV+E +LYGCVTW L P ++ KLR  H   LLR +      R   D + LSY + L+   C E +E  V KR L +AG VAR+ DERL
Sbjct:  118 VGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIG--WKKRERKD-RPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERL 265          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.740e-25
Identity = 64/150 (42.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL   IS+ G    EI  R+  AW CF + S  +YD P      K+R L+AEV+E +LYGC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE  V KR L +AG V R+ D RL
Sbjct:  112 GQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRL 258          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.830e-25
Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL  TIS+ G    EI  R+  AW C+ + S  +YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE  V KR L +AG V R++D RL
Sbjct:   61 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRL 207          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.060e-25
Identity = 64/150 (42.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL  TIS+ G    EI  R+  AW C+ + S  +YD        K+R L+AEV+E +LYGC +W+L+   + KL E HR  L R +    S R   D + LSY + L++  CE  IE  V KR L +AG V R++D RL
Sbjct:  406 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRL 552          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 9.980e-25
Identity = 64/150 (42.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL  TIS+ G V  EI  RT  AW C+ + S  +YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE  V KR L + G V R++D RL
Sbjct:  549 GQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFVGFVVRMEDSRL 695          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.480e-24
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL   IS+ G    EI  R+  AW C+ + S  +YD        K+R L++EV+E +LYGC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE  V KR L +AG V R++D RL
Sbjct:   19 GQTYKQTDRFVYLERIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQSEVVETLLYGCASWSLTADHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRL 165          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.030e-24
Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL  TIS+ G    EI  R+  AW C+ + S  +YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE  V KR L +AG V R++D RL
Sbjct:  162 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRL 308          
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JAM2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.070e-24
Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
            GQ Y Q D FVYL   IS+ G    EI  R+  AW C+ + S  +YD        K+R L+AEV+E +L+GC +W+L+   + KL   HR  L R +    S R   D + LSY + L++  CE  IE +V KR L +AG V R++D RL
Sbjct:   61 GQTYKQTDRFVYLGRIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLHGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYTQALIQAGCEETIEASVRKRGLCFAGFVMRMEDSRL 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBT2_9PHAE1.240e-2536.24Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K5W0_9PHAE1.730e-2542.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2J8_9PHAE2.300e-2542.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J5_9PHAE2.740e-2542.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPY3_9PHAE4.830e-2542.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZD4_9PHAE7.060e-2542.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L020_9PHAE9.980e-2542.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCQ1_9PHAE1.480e-2440.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE2.030e-2442.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JAM2_9PHAE3.070e-2440.67Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194838contigH-elongata_contig194838:11..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score78.6
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog13616.ENSMODP00000040406
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,3JN9Q@40674,48QQZ@7711,49FN3@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.8631165-CDS-H-elongata_contig194838:10..4601622930107.8631165-CDS-H-elongata_contig194838:10..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194838 11..460 -
1691679283.2427585-CDS-H-elongata_contig194838:10..4601691679283.2427585-CDS-H-elongata_contig194838:10..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194838 11..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194838.5420.1prot_H-elongata_contig194838.5420.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194838 11..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194838.5420.1

>prot_H-elongata_contig194838.5420.1 ID=prot_H-elongata_contig194838.5420.1|Name=mRNA_H-elongata_contig194838.5420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MGQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNP
YIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNA
YTSTRAAPDYQMLSYLEVLLRTDCECIEVAVMKRILHYAGHVARVDDERL
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mRNA from alignment at H-elongata_contig194838:11..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194838.5420.1 ID=mRNA_H-elongata_contig194838.5420.1|Name=mRNA_H-elongata_contig194838.5420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig194838:11..460- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAAAGGTACAGCCAAGTCGACACCTTCGTGTATCTTCGCAGCAC CATCAGCAGCGTTGGAGACGTCGGCCCTGAGATCAAACGCCGTACTGGCT ACGCCTGGAACTGCTTCCTCAAGTACAGCAGGGTGGTGTATGACAATCCA TACATCGCAGTGGCAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGA GGTCATGCTCTACGGCTGTGTGACTTGGACTCTTTCACCCGGCGACTTCG ACAAGCTGCGGGAAGTCCACCGCGGAATGCTGCTGAGGTTCCTCAATGCC TACACCTCGACGCGGGCCGCCCCTGACTACCAGATGCTCTCATACCTCGA GGTCCTCCTCAGGACTGACTGTGAGTGCATTGAAGTTGCTGTGATGAAGC GCATCCTCCACTACGCCGGCCACGTCGCGCGCGTGGACGACGAGCGTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig194838:11..460-

>mRNA_H-elongata_contig194838.5420.1 ID=mRNA_H-elongata_contig194838.5420.1|Name=mRNA_H-elongata_contig194838.5420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig194838:11..460- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAAAGGTACAGCCAAGTCGACACCTTCGTGTATCTTCGCAGCAC
CATCAGCAGCGTTGGAGACGTCGGCCCTGAGATCAAACGCCGTACTGGCT
ACGCCTGGAACTGCTTCCTCAAGTACAGCAGGGTGGTGTATGACAATCCA
TACATCGCAGTGGCAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGA
GGTCATGCTCTACGGCTGTGTGACTTGGACTCTTTCACCCGGCGACTTCG
ACAAGCTGCGGGAAGTCCACCGCGGAATGCTGCTGAGGTTCCTCAATGCC
TACACCTCGACGCGGGCCGCCCCTGACTACCAGATGCTCTCATACCTCGA
GGTCCTCCTCAGGACTGACTGTGAGTGCATTGAAGTTGCTGTGATGAAGC
GCATCCTCCACTACGCCGGCCACGTCGCGCGCGTGGACGACGAGCGTCTC
ATGGGGCAAAGGTACAGCCAAGTCGACACCTTCGTGTATCTTCGCAGCAC
CATCAGCAGCGTTGGAGACGTCGGCCCTGAGATCAAACGCCGTACTGGCT
ACGCCTGGAACTGCTTCCTCAAGTACAGCAGGGTGGTGTATGACAATCCA
TACATCGCAGTGGCAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGA
GGTCATGCTCTACGGCTGTGTGACTTGGACTCTTTCACCCGGCGACTTCG
ACAAGCTGCGGGAAGTCCACCGCGGAATGCTGCTGAGGTTCCTCAATGCC
TACACCTCGACGCGGGCCGCCCCTGACTACCAGATGCTCTCATACCTCGA
GGTCCTCCTCAGGACTGACTGTGAGTGCATTGAAGTTGCTGTGATGAAGC
GCATCCTCCACTACGCCGGCCACGTCGCGCGCGTGGACGACGAGCGTCTC
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