mRNA_H-elongata_contig194757.5418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194757.5418.1
Unique NamemRNA_H-elongata_contig194757.5418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: D7FJJ0_ECTSI (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ0_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.940e-16
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QTHSVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR 114
            +THS+SGSVFGEEPNLVQID HRSFPAFKPEGT+VMFR
Sbjct:  517 ETHSISGSVFGEEPNLVQIDNHRSFPAFKPEGTIVMFR 554
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A7R9U7T3_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7T3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 SVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMF 111
            +V+GSVFGE+P++VQI+ H SFPAF PEGT++MF
Sbjct:  461 TVTGSVFGEDPHIVQINDHSSFPAFSPEGTLLMF 494
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A7S2V587_9STRA (Phosphoglycerate dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V587_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QTHSVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR 114
            Q H ++GSVFG +P+LVQID   SFPAF PEGT++MF+
Sbjct:  351 QEHVITGSVFGTQPHLVQIDNFLSFPAFTPEGTLLMFK 388
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A835Z0M8_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.960e-8
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   10 SVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR 114
            ++SGSVFG E N+VQID ++SFPAF+PEGT++ FR
Sbjct:  469 TISGSVFGTEGNIVQIDNYKSFPAFQPEGTLLTFR 503
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: F0WMN6_9STRA (Uncharacterized protein ALNC14_087130 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMN6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.410e-8
Identity = 21/35 (60.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 SVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR 114
            SV+GSVFGEEP +V+ID++ +FP+F+PEG +++FR
Sbjct:  539 SVTGSVFGEEPRIVRIDEYNNFPSFRPEGNLLLFR 573
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A6U4F3N0_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F3N0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.420e-8
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 QTHSVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR 114
            Q  +V+GSVFGE+P++VQI+ H SFPAF PE T++MF+
Sbjct:  458 QKMTVTGSVFGEDPHIVQINDHNSFPAFVPEDTLLMFK 495
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A6G0XH78_9STRA (Phosphoglycerate dehydrogenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XH78_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.400e-8
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   13 VSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMF 111
            V GSVFGEEP +VQ+D++  FPAFKPEGT++ F
Sbjct:  476 VMGSVFGEEPRIVQVDEYSDFPAFKPEGTMLFF 508
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A7S3Y233_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y233_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 1.720e-7
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QTHSVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVM 108
            +TH ++GSVFG+EP+LVQ+D +RSFPAF+P G  ++
Sbjct:  181 ETHVLTGSVFGQEPHLVQLDGYRSFPAFRPSGGTLL 216
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A024GPI7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPI7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.540e-7
Identity = 21/38 (55.26%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 QTHSVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR 114
            Q  +V+GSVFGEEP +V ID++ +FP+F+PEG +++FR
Sbjct:  494 QQLTVTGSVFGEEPRIVCIDEYNNFPSFRPEGNLLLFR 531
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BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Match: A0A067CQC7_SAPPC (Phosphoglycerate dehydrogenase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQC7_SAPPC)

HSP 1 Score: 53.5 bits (127), Expect = 3.540e-7
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   10 SVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMF 111
            +V GSVFGEEP +VQ+D++  FPAFKP GT++ F
Sbjct:  485 TVVGSVFGEEPRIVQVDEYTEFPAFKPNGTLLFF 518
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194757.5418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ0_ECTSI3.940e-1689.47D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocar... [more]
A0A7R9U7T3_9STRA1.550e-867.65D-3-phosphoglycerate dehydrogenase n=1 Tax=Pinguio... [more]
A0A7S2V587_9STRA1.550e-863.16Phosphoglycerate dehydrogenase n=1 Tax=Fibrocapsa ... [more]
A0A835Z0M8_9STRA3.960e-865.71D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribone... [more]
F0WMN6_9STRA5.410e-860.00Uncharacterized protein ALNC14_087130 n=1 Tax=Albu... [more]
A0A6U4F3N0_9STRA5.420e-860.53D-3-phosphoglycerate dehydrogenase n=1 Tax=Phaeomo... [more]
A0A6G0XH78_9STRA7.400e-866.67Phosphoglycerate dehydrogenase n=1 Tax=Aphanomyces... [more]
A0A7S3Y233_HETAK1.720e-758.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024GPI7_9STRA3.540e-755.26Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A067CQC7_SAPPC3.540e-761.76Phosphoglycerate dehydrogenase n=2 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194757contigH-elongata_contig194757:683..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue9.3e-13
Seed eggNOG ortholog2880.D7FJJ0
Preferred namePHGDH
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004617,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006541,GO:0006544,GO:0006563,GO:0006564,GO:0006566,GO:0006790,GO:0006805,GO:0006807,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008652,GO:0009055,GO:0009058,GO:0009064,GO:0009066,GO:0009069,GO:0009070,GO:0009410,GO:0009448,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010001,GO:0010468,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0019222,GO:0019530,GO:0019694,GO:0019752,GO:0021510,GO:0021782,GO:0021915,GO:0022008,GO:0022402,GO:0022900,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032787,GO:0035295,GO:0042063,GO:0042133,GO:0042221,GO:0043009,GO:0043209,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051716,GO:0055114,GO:0060255,GO:0060322,GO:0060429,GO:0065007,GO:0065008,GO:0070314,GO:0070887,GO:0071466,GO:0071704,GO:0071840,GO:0120036,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.phosphoglycerate dehydrogenase activity
EggNOG OGsCOG0111@1,KOG0068@2759
EC1.1.1.399,1.1.1.95
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.7262375-CDS-H-elongata_contig194757:682..7961622930107.7262375-CDS-H-elongata_contig194757:682..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194757 683..796 +
1691679283.211609-CDS-H-elongata_contig194757:682..7961691679283.211609-CDS-H-elongata_contig194757:682..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194757 683..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194757.5418.1prot_H-elongata_contig194757.5418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194757 683..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194757.5418.1

>prot_H-elongata_contig194757.5418.1 ID=prot_H-elongata_contig194757.5418.1|Name=mRNA_H-elongata_contig194757.5418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
QTHSVSGSVFGEEPNLVQIDQHRSFPAFKPEGTVVMFR
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mRNA from alignment at H-elongata_contig194757:683..796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194757.5418.1 ID=mRNA_H-elongata_contig194757.5418.1|Name=mRNA_H-elongata_contig194757.5418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig194757:683..796+ (Himanthalia elongata Himel1 dioecious)
CAGACGCACTCCGTTTCGGGGTCCGTGTTCGGCGAGGAGCCCAACCTGGT
GCAGATCGATCAACACCGGAGCTTCCCGGCGTTCAAGCCCGAGGGAACTG
TGGTAATGTTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig194757:683..796+

>mRNA_H-elongata_contig194757.5418.1 ID=mRNA_H-elongata_contig194757.5418.1|Name=mRNA_H-elongata_contig194757.5418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig194757:683..796+ (Himanthalia elongata Himel1 dioecious)
CAGACGCACTCCGTTTCGGGGTCCGTGTTCGGCGAGGAGCCCAACCTGGT
GCAGATCGATCAACACCGGAGCTTCCCGGCGTTCAAGCCCGAGGGAACTG
TGGTAATGTTCAGGCAGACGCACTCCGTTTCGGGGTCCGTGTTCGGCGAG
GAGCCCAACCTGGTGCAGATCGATCAACACCGGAGCTTCCCGGCGTTCAA
GCCCGAGGGAACTGTGGTAATGTTCAGG
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