mRNA_H-elongata_contig194695.5415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194695.5415.1
Unique NamemRNA_H-elongata_contig194695.5415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194695.5415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194695contigH-elongata_contig194695:576..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size148
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.5337148-CDS-H-elongata_contig194695:575..6421622930107.5337148-CDS-H-elongata_contig194695:575..642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194695 576..642 +
1691679283.1004467-CDS-H-elongata_contig194695:575..6421691679283.1004467-CDS-H-elongata_contig194695:575..642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194695 576..642 +
1622930107.5478387-CDS-H-elongata_contig194695:958..10381622930107.5478387-CDS-H-elongata_contig194695:958..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194695 959..1038 +
1691679283.1136446-CDS-H-elongata_contig194695:958..10381691679283.1136446-CDS-H-elongata_contig194695:958..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194695 959..1038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194695.5415.1prot_H-elongata_contig194695.5415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194695 576..1038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194695.5415.1

>prot_H-elongata_contig194695.5415.1 ID=prot_H-elongata_contig194695.5415.1|Name=mRNA_H-elongata_contig194695.5415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
TLFLFPPESAEFLKLLLLRQHFCGGRTSLRYNRDGAQRSLVDDADEGNV
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mRNA from alignment at H-elongata_contig194695:576..1038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194695.5415.1 ID=mRNA_H-elongata_contig194695.5415.1|Name=mRNA_H-elongata_contig194695.5415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=463bp|location=Sequence derived from alignment at H-elongata_contig194695:576..1038+ (Himanthalia elongata Himel1 dioecious)
ACTCTATTTCTCTTCCCGCCAGAAAGTGCGGAGTTTTTAAAACTGCTGCT
GCTGCGGCAGCACTTCTGTGAGTAAGTAAATACCCTCTCTCTTCCCGCCA
AAACGGGCGTAGGTTTTAACACTGCTGCTGCTGTACGGCAGCTGCTGTGA
GTTGGTAAATACCCTCTCTCTTTCCCGCCAGAACGGGCGGAGGTTTTAAA
ACTGCTGCTGCTGGATGGCAGCAGTAGTAAATACCGGTATAATCTTATAT
TTATACAATGTTGGTATTATTTACCGACTACGTACTGCTGTGTTGTATTT
GCCCTAATTTTGGTACGAAATCCCACCCACCCCCTCCCGTCTCCCTCCCG
TGGCCGAAACAACTCTGTTGTTTGTCCTTGAAGGCGGCGGACGAACGTCA
CTCAGATACAATCGAGATGGTGCGCAGAGATCCCTTGTTGATGACGCAGA
TGAGGGAAATGTT
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Coding sequence (CDS) from alignment at H-elongata_contig194695:576..1038+

>mRNA_H-elongata_contig194695.5415.1 ID=mRNA_H-elongata_contig194695.5415.1|Name=mRNA_H-elongata_contig194695.5415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig194695:576..1038+ (Himanthalia elongata Himel1 dioecious)
ACTCTATTTCTCTTCCCGCCAGAAAGTGCGGAGTTTTTAAAACTGCTGCT
GCTGCGGCAGCACTTCTACTCTATTTCTCTTCCCGCCAGAAAGTGCGGAG
TTTTTAAAACTGCTGCTGCTGCGGCAGCACTTCTGCGGCGGACGAACGTC
ACTCAGATACAATCGAGATGGTGCGCAGAGATCCCTTGTTGATGACGCAG
ATGAGGGAAATGTTGCGGCGGACGAACGTCACTCAGATACAATCGAGATG
GTGCGCAGAGATCCCTTGTTGATGACGCAGATGAGGGAAATGTT
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