mRNA_H-elongata_contig19463.5412.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19463.5412.1
Unique NamemRNA_H-elongata_contig19463.5412.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19463.5412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19463contigH-elongata_contig19463:5655..6869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.9643905-CDS-H-elongata_contig19463:5654..58501622930106.9643905-CDS-H-elongata_contig19463:5654..5850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 5655..5850 -
1691679282.847387-CDS-H-elongata_contig19463:5654..58501691679282.847387-CDS-H-elongata_contig19463:5654..5850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 5655..5850 -
1622930106.98111-CDS-H-elongata_contig19463:6606..68691622930106.98111-CDS-H-elongata_contig19463:6606..6869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 6607..6869 -
1691679282.858752-CDS-H-elongata_contig19463:6606..68691691679282.858752-CDS-H-elongata_contig19463:6606..6869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 6607..6869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19463.5412.1prot_H-elongata_contig19463.5412.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19463 5655..6869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19463.5412.1

>prot_H-elongata_contig19463.5412.1 ID=prot_H-elongata_contig19463.5412.1|Name=mRNA_H-elongata_contig19463.5412.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
KVRLVDSNFESNRALDTFGGAVSVEGASRLSVSRCVFAYNHATEGGAVYG
SDSGTTVFLQYCSLKGNIAKQNGGAMMADTLNSIAVESCYFDGNYAGDLG
GGIQCYESTLEATNCTFDRNKVQGDGGAIGLSYATSATVTKCHFIENRGV
EV*
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mRNA from alignment at H-elongata_contig19463:5655..6869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19463.5412.1 ID=mRNA_H-elongata_contig19463.5412.1|Name=mRNA_H-elongata_contig19463.5412.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1215bp|location=Sequence derived from alignment at H-elongata_contig19463:5655..6869- (Himanthalia elongata Himel1 dioecious)
AAGGTGCGCCTCGTGGATTCGAACTTTGAGAGTAACCGGGCCCTGGACAC
ATTCGGGGGAGCGGTGAGCGTTGAGGGGGCCTCACGACTCTCTGTCTCGC
GCTGCGTGTTCGCTTACAACCACGCCACCGAAGGCGGCGCGGTGTACGGT
TCCGATTCGGGCACGACGGTGTTCTTGCAATATTGCAGTCTTAAGGGTAA
CATAGCAAAGCAGAACGGCGGGGCGATGATGGCCGACACCCTCAACTCAA
TCGCGGTGGAAAGGTAAGTACTGGACTGTACTGGACAACACCAATACTAA
ATTGAACATTATATGTACAGTATCTTAACATATGTATCTCTCATAGTCTC
TATAGTCTACATTAGTAATAGTCTATAGTCTATAGTAGTCTATAGTATAT
AGTAATCTAAAGTATATAGTAGTCTATAGTCTACACTAGTAATAGTCTAT
AGTCTATAGTAGTCTATAGTATATAGTAGTCTAAAGTATATAGTAGTCTA
AAGTATATAGTAATCTATAGTATATAGTAGTCTATAGTCTATAGTAGTCT
ATAGTATATAGTAGTCTACAGTAGTCTATAGTATACACTATTAATAGTAT
ATAGTAGTCTATAGTATATAGTATCGGTATGAAGAGTCGCTACACGATAT
GCTATTTCGAAAGAGATAGGGGTAAGAGCGGAACACTGCCTCTGTGCTAC
AATTTATTTTGATCTTTGAACTTGTAATGCAATGGGATGAAACGGAATTG
TTTGGTATGCTTTCCTCGCCCGGTTGGTAAAAGTAACATAGCAGATTGTT
AATTTTGATCATGTCACAACATTAATCACGACCAGGCGCCTTTATTCACT
TGGCCATTTTAACCAAACGCTCAGTTTCTCGGTTAATCAGTTCCTCAGTT
TAAGTACATCGCTCCCGCCGGCTCTCTTGATGTACCATCGAATGGATCCA
TGATATGGCTGATTTACCATCGGTGGTATGGTACGGTACGGTACGGCTAT
CCAACTTCGTCAACTAAAGCTGTTATTTTGATGGCAACTACGCGGGCGAC
CTGGGCGGCGGTATCCAGTGCTACGAGTCCACCTTGGAGGCGACAAATTG
TACATTTGACCGTAACAAAGTTCAAGGAGACGGCGGAGCCATTGGGCTAT
CTTACGCGACCTCGGCCACCGTTACCAAGTGCCACTTCATCGAAAATAGA
GGTGTGGAGGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig19463:5655..6869-

>mRNA_H-elongata_contig19463.5412.1 ID=mRNA_H-elongata_contig19463.5412.1|Name=mRNA_H-elongata_contig19463.5412.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig19463:5655..6869- (Himanthalia elongata Himel1 dioecious)
AAGGTGCGCCTCGTGGATTCGAACTTTGAGAGTAACCGGGCCCTGGACAC
ATTCGGGGGAGCGGTGAGCGTTGAGGGGGCCTCACGACTCTCTGTCTCGC
GCTGCGTGTTCGCTTACAACCACGCCACCGAAGGCGGCGCGGTGTACGGT
TCCGATTCGGGCACGACGGTGTTCTTGCAATATTGCAGTCTTAAGGGTAA
CATAGCAAAGCAGAACGGCGGGGCGATGATGGCCGACACCCTCAACTCAA
TCGCGGTGGAAAGAAGGTGCGCCTCGTGGATTCGAACTTTGAGAGTAACC
GGGCCCTGGACACATTCGGGGGAGCGGTGAGCGTTGAGGGGGCCTCACGA
CTCTCTGTCTCGCGCTGCGTGTTCGCTTACAACCACGCCACCGAAGGCGG
CGCGGTGTACGGTTCCGATTCGGGCACGACGGTGTTCTTGCAATATTGCA
GTCTTAAGGGTAACATAGCAAAGCAGAACGGCGGGGCGATGATGGCCGAC
ACCCTCAACTCAATCGCGGTGGAAAGCTGTTATTTTGATGGCAACTACGC
GGGCGACCTGGGCGGCGGTATCCAGTGCTACGAGTCCACCTTGGAGGCGA
CAAATTGTACATTTGACCGTAACAAAGTTCAAGGAGACGGCGGAGCCATT
GGGCTATCTTACGCGACCTCGGCCACCGTTACCAAGTGCCACTTCATCGA
AAATAGAGGTGTGGAGGTGTAGCTGTTATTTTGATGGCAACTACGCGGGC
GACCTGGGCGGCGGTATCCAGTGCTACGAGTCCACCTTGGAGGCGACAAA
TTGTACATTTGACCGTAACAAAGTTCAAGGAGACGGCGGAGCCATTGGGC
TATCTTACGCGACCTCGGCCACCGTTACCAAGTGCCACTTCATCGAAAAT
AGAGGTGTGGAGGTGTAG
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