mRNA_H-elongata_contig19448.5405.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19448.5405.1
Unique NamemRNA_H-elongata_contig19448.5405.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: R7QRG3_CHOCR (Cellulase n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QRG3_CHOCR)

HSP 1 Score: 229 bits (583), Expect = 4.590e-67
Identity = 113/247 (45.75%), Postives = 156/247 (63.16%), Query Frame = 2 
Query:    5 KHYETTGESVIFGLGSYGSEEDGKLGKCYRFKIDTGANDIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTL----REDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETMGTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTR 733
            ++ + TG+ V+FG+GSYG++ +  +GKCY+F ++     IIAQV+N+GA+++ NQFDMQMGGGGFGVWNAC+ P       +D T + + PC  +   DI+V   + +G++ WG RCGG  Y   C  LP++P TL    R  G    EP+L  LC+ +FDW  R    +  IT G +VPCP   V++TN KR DD   E M   G LTSTMDCC+PA +Y   T+ N  L +  R+ PCT+DGYTR
Sbjct:   56 QYKQQTGQDVLFGVGSYGAQNNLNIGKCYKFNLNPPTKPIIAQVTNWGAEISTNQFDMQMGGGGFGVWNACSGP-------TDKTASDNRPCNTNDYLDIAVRPQFVSGKSEWGRRCGGHIYRTGCRSLPKWPATLEYRPRPAGSSTNEPNLRTLCKRSFDWGARINNGNKQITGGQRVPCPQQFVEITNLKRRDDSRYEQMPR-GTLTSTMDCCSPASAYPSVTMGNKLLPNRNRIRPCTRDGYTR 294
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A2V3ID67_9FLOR (Cellulase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID67_9FLOR)

HSP 1 Score: 201 bits (510), Expect = 2.850e-56
Identity = 109/251 (43.43%), Postives = 155/251 (61.75%), Query Frame = 2 
Query:   26 ESVIFGLGSYGSEEDGKLGKCYRFKIDT--GANDIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEAN--WGERCGGQKYVEDCSYLPEYPTTLREDG-VQHE-------EPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETM---GTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTR 733
            E++ FG+GSYGS   G LGKC++F +DT   +  ++ QV+N G D+ NNQ DMQMG GGFG++N CA P      T+   G++   C +    D  V+    +G  +  +GERCGGQK  E CSY+PE P+ + + G +Q         EPSL+ +C+ AFDW VRKP  +  IT G ++PCP+ +V++TN +R DD+++ETM   G  G LTSTMDCCAP+     +   N     + R++PC +DGYTR
Sbjct:   60 ENIFFGMGSYGSGT-GNLGKCFKFYLDTLGSSTAVVFQVTNEGVDIRNNQVDMQMGAGGFGIFNVCAGP------TNKNNGDA---CARDVVTDNIVAYPQFDGTPHDAFGERCGGQKTREQCSYVPEQPSQIGQPGEIQQRPVFQNVREPSLVTMCQRAFDWQVRKPNGNARITRGERIPCPNEMVEITNLRRTDDNAKETMNFGGGTGELTSTMDCCAPSAIVFGNI--NFPDPKHPRVIPCKRDGYTR 298
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A0W0YUL1_9GAMM (Cellulase n=4 Tax=Legionella sainthelensi TaxID=28087 RepID=A0A0W0YUL1_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 1.450e-26
Identity = 92/268 (34.33%), Postives = 125/268 (46.64%), Query Frame = 2 
Query:   20 TGESVIFGLGSYGSE-----EDGKLGKCYRFKIDTGANDIIAQVSNFGADVAN-NQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVP----CPDALVDVTNFKRDDDDSE------------ETMGTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTRSTL*RSPA 757
            TG+ V FG+G++  E      D  LG C+R     G  DIIAQV N G D+ N NQFD+QMG GG G +NACA                          D ++S +YS  +  WG   GG +   DCS LPEYPT +  +G  +   +L  LC+  FD   R  G + +  +   VP    CPD L  +T FKR DD S             +       +T  MDC  P  S++ H +++ A+S    L  C +DGYTR     +P+
Sbjct:   64 TGQDVHFGVGTFMGEGDQVGTDKHLGSCFRLVFTDGQKDIIAQVVNTGYDMNNPNQFDLQMGAGGMGAFNACAG-------------------------DPNIS-MYSGNKFAWGLVYGGIQNEIDCSNLPEYPTVINSNGQTN---NLQMLCKYGFDNKYR--GDNGLNYKFKYVPERVKCPDELTQLTGFKRKDDPSSYELSLFKPCNLGDKYSISCAMTRMMDCAKPTASWTDH-VKDLAVSG--PLPACQRDGYTRQNNVNAPS 297
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: UPI001244C0C4 (endoglucanase n=1 Tax=Legionella longbeachae TaxID=450 RepID=UPI001244C0C4)

HSP 1 Score: 119 bits (298), Expect = 9.240e-26
Identity = 87/268 (32.46%), Postives = 125/268 (46.64%), Query Frame = 2 
Query:   20 TGESVIFGLGSYGSE-----EDGKLGKCYRFKIDTGANDIIAQVSNFGADVAN-NQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVP----CPDALVDVTNFKRDDDDSE------------ETMGTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTRSTL*RSPA 757
            TG+ V FG+G++  E      D  LG C+R     G  D+IAQV N G D+ N NQFD+QMG GG G +NAC                           D+++S +YS  ++ WG   GG +   DCS LP+YP  +  +G  ++   L  LC+  FD   R  G + +  +   +P    CP+ L  +T FKR DD S             +       +T  MDC  P  S++ H ++N A+S    L  C +DGYTR     +P+
Sbjct:   64 TGQDVHFGVGTFMGEGDQVGTDKHLGSCFRLVFSDGQKDLIAQVVNTGYDMNNPNQFDLQMGAGGMGAFNACVG-------------------------DLNIS-MYSGSKSQWGLVYGGIQNEVDCSNLPKYPMVVSSNGQTND---LQMLCKYGFDNKYR--GENGLNYKFKYIPERVKCPEELTKLTGFKRKDDPSNYGLLLFKPCKLGDEYSISCAMTRMMDCAKPTASWADH-VKNLAVSG--PLPACQRDGYTRQNNVNAPS 297
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A7S0A4L0_9DINO (Cellulase n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A4L0_9DINO)

HSP 1 Score: 117 bits (292), Expect = 1.440e-24
Identity = 86/264 (32.58%), Postives = 121/264 (45.83%), Query Frame = 2 
Query:   32 VIFGLGSYG----SEEDGKLGKCYRFKIDTGANDIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEET--------------------MGTPGL-----LTSTMDCCAPAGSYSYHTLRNGALSDYIRLV-PCTQDGYTR 733
            V FG+G+YG     +  G LG+C +  +     +IIAQ  N G DV+ NQFD+QMG GG G++N CA                         DD S   +Y   ++ WG + GG  +   C+ LP YP       ++    +L+ LCE AFD  V +   +P I    +V CP  LV++T F+R D+ +E                      +G PG+     LT  MDC  P+G+   +      L+D  RLV PC  DGYTR
Sbjct:  186 VYFGVGTYGVDLGKDPMGGLGQCVQIHVKGLEREIIAQSINTGHDVSVNQFDLQMGAGGVGLFNTCAG------------------------DDFS---MYPGPKSVWGHQYGGLDHKSQCADLPPYPRDSA--PMKAAGDNLVNLCEYAFDKGVYQ---NPSIASIARVTCPAELVNLTQFRRADEPTEAEAERNLAEAAAQRKTGGNKCRLGAPGVGADYCLTRMMDCRKPSGAIKDNLQNVALLADGHRLVQPCLADGYTR 417
[Close]
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A378IH44_9GAMM (Cellulase n=3 Tax=Legionella TaxID=445 RepID=A0A378IH44_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 3.650e-24
Identity = 88/269 (32.71%), Postives = 121/269 (44.98%), Query Frame = 2 
Query:   20 TGESVIFGLGSYGSE-----EDGKLGKCYRFKIDTGANDIIAQVSNFGADVAN-NQFDMQMGGGGFGVWNACA-DPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVP----CPDALVDVTNFKRDDDDSE------------ETMGTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTRSTL*RSPA 757
            TG+ V FG+G++  E      D  LG C+R        DIIAQV N G D+ N NQFD+QMG GG G +NAC  DP                             ++YS  ++ WG   GG +   DCS LPEYP  +  +G  +   +L  LC+  FD   R  G + +  +   VP    CPD L  +T FKR DD               +       +T  MDC  P  S++ H +++ A+S    L  C +DGYTR     +P+
Sbjct:   64 TGQDVHFGVGTFMGEGDQVGTDKHLGSCFRLVFKDDQKDIIAQVVNTGYDMNNPNQFDLQMGAGGMGAFNACVGDPKI---------------------------SMYSGSKSQWGLVYGGIQNEVDCSNLPEYPMVVSSNGQTN---NLQMLCKYGFDNKYR--GENGLNYKFKYVPERVKCPDELTQLTGFKRKDDPPNYELLLFKPCNLGDKYSIACAMTRMMDCAKPTASWTDH-VKDLAVSG--PLPACQRDGYTRQDNVNAPS 297
[Close]
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A553PNW7_TIGCA (Cellulase n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PNW7_TIGCA)

HSP 1 Score: 112 bits (279), Expect = 9.820e-23
Identity = 88/279 (31.54%), Postives = 120/279 (43.01%), Query Frame = 2 
Query:   32 VIFGLGSYGSEEDGK--LGKCYRFKI-DTGAN----------DIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVED------CSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETM---GTPG----------------------LLTSTMDCCAPAGSYSYHTLRNGALSDYIRLV-PCTQDGYTR 733
            V FG+G++G+ ED    LG CYR K+ DT             +IIAQ  N G DVAN QFD+QMG GG G +N CA  ++ +                               E+ WG + GG  Y +       C  LPE P        Q +  +L++LC+ +FD  VR    +P I +  +V CP  LV++T  KR DD     +     PG                       LT  MDC  P+  +    L+   L D +++V PCT DGYTR
Sbjct:  106 VWFGVGTFGTTEDAMQGLGNCYRLKVRDTNCGNLEGGALLEREIIAQSINTGHDVANIQFDLQMGNGGTGAFNNCAGSSWSMFPGQFI-------------------------ESIWGAQYGGCSYRDSSEGSPSCDDLPELPQDSSAMSAQGD--NLVDLCKYSFDKRVRLGSSNPTIVDMARVECPAELVELTQIKRSDDPKTFEITEANRPGPYQNNPVIEPCRCSCGSNECTYCLTRMMDCRKPSAGF-IDNLQTNLLEDGMKVVQPCTSDGYTR 356
[Close]
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A7S4WF25_9DINO (Cellulase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WF25_9DINO)

HSP 1 Score: 112 bits (279), Expect = 1.250e-22
Identity = 80/278 (28.78%), Postives = 123/278 (44.24%), Query Frame = 2 
Query:   11 YETTGESVIFGLGSYG--SEEDGK--LGKCYRFKIDTGANDIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPG---------HSPIITEGHQVPCPDALVDVTNFKRDDD-----------------------DSEETMGTPGL-LTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTR 733
            ++ TGE V FG+G++G   E D +  LG CYR  ++  A  I+AQ  N G+DVA NQFD+Q+G GG G++N C                               S+++  G A WG + GG      C+ LP YP +  E  ++    +L  LCE ++D  VR  G         ++P + +  +V CP  L D+T F+R D+                        + + +G     LT  MDC  P+ ++  +  +   +     L  CT DGYT+
Sbjct:  224 HDETGEDVFFGVGTFGVSKEADAQQGLGACYRMLVEGVAKPIVAQAINTGSDVAGNQFDLQIGAGGAGIFNTCVG---------------------------GTSSMFPGGLAAWGCQYGGVDSRSACAALPMYPRS--EQPMRAAGDTLPALCEYSWDQGVRISGAGKPSGPCKYNPTLRDVARVRCPSQLADITQFQRADEPQTYKATPEHRIKGFPNRGYKCQSAAQPVGNSSFCLTRMMDCRKPSAAWITNLHKELMVPGRKVLQTCTADGYTK 472
[Close]
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A1Y3NEB5_PIRSE (Cellulase n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NEB5_PIRSE)

HSP 1 Score: 69.7 bits (169), Expect = 8.870e-10
Identity = 50/174 (28.74%), Postives = 74/174 (42.53%), Query Frame = 2 
Query:   86 CYRFKIDTGA---NDIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETM 598
            CYR +    A     ++ QV+N G D++NN FD+QM GGG GV+N C                S W                + GE  WG+R GG + V +C  LP               P L + C+  F+W   K   +P + +  +V CP  L D+T     DD +++ +
Sbjct:  100 CYRLQFTNTAIKGKQMVVQVTNTGYDLSNNHFDIQMPGGGVGVFNGC---------------KSQW----------------NTGEDGWGKRYGGVESVAECDQLP---------------PVLQDACKWRFNWY--KNADNPEM-DFERVQCPKELTDITGCVPIDDANQKKL 224
[Close]
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A267GSU9_9PLAT (Cellulase (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GSU9_9PLAT)

HSP 1 Score: 70.9 bits (172), Expect = 1.260e-9
Identity = 52/178 (29.21%), Postives = 73/178 (41.01%), Query Frame = 2 
Query:   56 GSEEDGKLGKCYRFKIDTG---ANDIIAQVSNFGADVANNQFDMQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDD 580
            G +E G+   CY+     G      ++ QV+N G DV  NQFD+Q+ GGG G++N C                               SA ++ G   WG+R GG     +C  LP     +R DG           C   FDW       + +     +V CPDALV ++  +RDDD
Sbjct:  200 GLDESGRCCACYKLDFTNGPVQGKSMVVQVTNSGGDVHPNQFDLQIPGGGVGIFNGC-------------------------------SAQWNAGPDGWGQRYGGVSRRSECGSLP---AQIR-DG-----------CYWRFDWFRGADNPAMVYL---RVRCPDALVAISGCRRDDD 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QRG3_CHOCR4.590e-6745.75Cellulase n=2 Tax=Chondrus crispus TaxID=2769 RepI... [more]
A0A2V3ID67_9FLOR2.850e-5643.43Cellulase n=1 Tax=Gracilariopsis chorda TaxID=4483... [more]
A0A0W0YUL1_9GAMM1.450e-2634.33Cellulase n=4 Tax=Legionella sainthelensi TaxID=28... [more]
UPI001244C0C49.240e-2632.46endoglucanase n=1 Tax=Legionella longbeachae TaxID... [more]
A0A7S0A4L0_9DINO1.440e-2432.58Cellulase n=1 Tax=Pyrodinium bahamense TaxID=73915... [more]
A0A378IH44_9GAMM3.650e-2432.71Cellulase n=3 Tax=Legionella TaxID=445 RepID=A0A37... [more]
A0A553PNW7_TIGCA9.820e-2331.54Cellulase n=1 Tax=Tigriopus californicus TaxID=683... [more]
A0A7S4WF25_9DINO1.250e-2228.78Cellulase n=1 Tax=Alexandrium monilatum TaxID=3114... [more]
A0A1Y3NEB5_PIRSE8.870e-1028.74Cellulase n=1 Tax=Piromyces sp. (strain E2) TaxID=... [more]
A0A267GSU9_9PLAT1.260e-929.21Cellulase (Fragment) n=3 Tax=Macrostomum lignano T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19448contigH-elongata_contig19448:69..7067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog1408445.JHXP01000016_gene3486
EggNOG free text desc.Glycosyl hydrolase family 45
EggNOG OGs1JFT7@118969,1P8GF@1224,1T7T3@1236,2DFTY@1,2ZT4M@2
COG Functional cat.G
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1727
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19448.5405.1prot_H-elongata_contig19448.5405.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19448 569..6085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.1578596-UTR-H-elongata_contig19448:68..2011622930106.1578596-UTR-H-elongata_contig19448:68..201Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19448 69..201 +
1691679282.4654984-UTR-H-elongata_contig19448:68..2011691679282.4654984-UTR-H-elongata_contig19448:68..201Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19448 69..201 +
1622930106.176836-UTR-H-elongata_contig19448:526..5681622930106.176836-UTR-H-elongata_contig19448:526..568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19448 527..568 +
1691679282.4847744-UTR-H-elongata_contig19448:526..5681691679282.4847744-UTR-H-elongata_contig19448:526..568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19448 527..568 +
1622930106.2947383-UTR-H-elongata_contig19448:6085..70671622930106.2947383-UTR-H-elongata_contig19448:6085..7067Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19448 6086..7067 +
1691679282.5478194-UTR-H-elongata_contig19448:6085..70671691679282.5478194-UTR-H-elongata_contig19448:6085..7067Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19448 6086..7067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.1946018-CDS-H-elongata_contig19448:568..5711622930106.1946018-CDS-H-elongata_contig19448:568..571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 569..571 +
1691679282.499326-CDS-H-elongata_contig19448:568..5711691679282.499326-CDS-H-elongata_contig19448:568..571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 569..571 +
1622930106.21047-CDS-H-elongata_contig19448:833..10191622930106.21047-CDS-H-elongata_contig19448:833..1019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 834..1019 +
1691679282.5084438-CDS-H-elongata_contig19448:833..10191691679282.5084438-CDS-H-elongata_contig19448:833..1019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 834..1019 +
1622930106.2228684-CDS-H-elongata_contig19448:1649..17661622930106.2228684-CDS-H-elongata_contig19448:1649..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 1650..1766 +
1691679282.5175924-CDS-H-elongata_contig19448:1649..17661691679282.5175924-CDS-H-elongata_contig19448:1649..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 1650..1766 +
1622930106.2379544-CDS-H-elongata_contig19448:2601..27091622930106.2379544-CDS-H-elongata_contig19448:2601..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 2602..2709 +
1691679282.5275145-CDS-H-elongata_contig19448:2601..27091691679282.5275145-CDS-H-elongata_contig19448:2601..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 2602..2709 +
1622930106.2785087-CDS-H-elongata_contig19448:5929..60851622930106.2785087-CDS-H-elongata_contig19448:5929..6085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 5930..6085 +
1691679282.5378535-CDS-H-elongata_contig19448:5929..60851691679282.5378535-CDS-H-elongata_contig19448:5929..6085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19448 5930..6085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19448.5405.1

>prot_H-elongata_contig19448.5405.1 ID=prot_H-elongata_contig19448.5405.1|Name=mRNA_H-elongata_contig19448.5405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYS
NGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFD
WNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETMGTPGLLTST
MDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTRSTL*
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mRNA from alignment at H-elongata_contig19448:69..7067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19448.5405.1 ID=mRNA_H-elongata_contig19448.5405.1|Name=mRNA_H-elongata_contig19448.5405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6999bp|location=Sequence derived from alignment at H-elongata_contig19448:69..7067+ (Himanthalia elongata Himel1 dioecious)
AGATAAGCACTATGAAACCACAGGAGAGTCGGTGATTTTCGGCTTGGGAT
CCTACGGCAGCGAAGAAGACGGAAAACTGGGCAAGTGCTACCGCTTTAAG
ATCGACACGGGGGCAAACGATATAATTGCGCAGGTAATGGTAGATTTCGT
AGACCAAATTTGTTTCATACAGATCGTTCGCCGCGGTGCTTCAATTTAAG
CCGTGTACGGGATGTAATGTTTATGGAACCAAACTTTACTGAATGGCGAT
TTGCATCCTCTGACTCAGAGTGTATTAGTTTTATGTCGAAGCAGCTCCGA
GGGGAATTATCGAGAGCGAGCATTTCGCTCGAGCTCTTGGCTTACAGCGA
TATTCCCTTTCCACCGCATATGCATCCTTCTCAGACGTCAACCAGCCCTT
ATTTACTATTGTCACTACAAATGAATGTCATTCTCCCGCCACCCTGCACC
TTTCTTAGGTCTCTAACTTCGGTGCCGACGTCGCCAACAACCAGTTTGAC
ATGGTGAGCTAAGATGGGCGAGCCAGGAAAAGTAAACTGCGAGAAATCTC
TGAACCCGCAAGAAAAATGGGCAGTTGCCAACGAGATGTTGCGCCGTGCT
TTTGATATCCCATACCACTGTAAGATTTTATCGAGCATACCACAACATGC
ATGAACGGAAGATCAAGTGTATTCTATGAGTACTGGATGAAATTCAAAAT
AGACCATGTTGCGGGACTCACCCGTCTCATTATCCGTTTGAATGGCCCCC
ATCTTGTCCTAATAGCAAATGGGTGGCGGTGGATTTGGCGTGTGGAACGC
ATGCGCCGATCCAGCGTATCACGTTGTTAGCACCTCGGACTACACTGGCA
ACAGCGATTGGCCATGTACACAGAGCGCTACGGACGATATCTCCGTCTCC
GCCTTATATTCAAATGGGGAGGCAAACTGGGGAGAACGATGTGGTGGGCA
GGTACTACTATAACGAGGCACCACGATTTTCTAACGCAGCTCGGCCAATG
AGCTGGAGTAGTTAATGTTCCGGCATTGATATCGTGATAGCTTTTGTCGG
GTTGGTACTTCAGGGTTGTGTGCCAAAGGTAGTAAAATCTCCTGCCGCCT
TCATCGCCAAAATATTATATCATGCTGATACCGTTTCCGTTGCCATTGTC
TCCTTCAATGATAGTGCGCGGTTGAGCACCTTTACATCTAGAGCAGTATT
GCGCATTAATCTGATGACAAATAGTTTAGCTGTCACTACGTCTTCGACAG
CTGTGTAACTCCACATCCTCTGGCTCAAAATTTCACACTAACGCGTCAAT
TGTACGTGCCTTGAACGTGTATCGACTCATGCTGTTTCTGTATAGCGTAC
GTACTCGGCAACTTTACGAATCAATACGCCTTTGAGCAGGAAGACTCTTT
CAGTTTTCACATTGGTATTGCGATCAAGGACTACTTTTGACTTCCAGAGA
GATCAAATGGTTCTATTGGGGCAGGTGACCAATTCTCAGTGTACCCTACA
GTGTACATTGCTGTGTGTCGTTTGCTGATGAAGCACACCTCGCGGTGATG
CCTGACTTGACATGCATGGACGGGCACCCAGAAATATGTTGAAGACTGTT
CGTATCTACCGGAGTACCCGACGACTCTCCGCGAAGATGGTGTTCAACAT
GAGGAGCCCAGCCTTATCGAGTTGTGCGAGACAGCATTCGACTGGAATGT
GGGTGCTAGAATATATCCTCGTATGTATATTAAATATTAAGTGACCTTGA
AATTATTTTATAACCTGCTGCCGTGGATATCGTTGTACCATATTCGCACA
TACCGCATCCGCTGCTAGTTTGTGGTGCGGTGCAAGACTCTATTTCAAAG
ATGGACTATTTCACAGTGATAATGTGCGCCTCCCGTATATATTTCTATGT
GACATGATACCGTATTATTAGCGTTTCCTAATTAGTTCCCGTTTTTCGTA
TGTATAATTATAGTTAGCTTATGTTATTTCCCATGTATATATACATATAT
ATATATTTAGGTTCCATGTATTGTTTCAATCATTCGCTCTAATACTGCAC
CCGCTTTTACTTTGTACTGCTGTGCAAAACTCTATTTCAAATGTGCTATA
TTTCAGAGTGATTATGTGCGCCTTCCGTATAGATTTTTATGTGATGTGAT
CCCGTATTATAATCGTTTCCTAATTAGTTCACGTTTTTTATATATATTAG
TTAGCTTATGTTATTTTTTATATATATAGGCTACAGTCGAAAGAAGCAAG
GGATAGCATCTTCGTATAATATGCATTCGTGGAGCTTCGAACATGGGAAG
CCCGTGTCCATTGTGCTGATCCCTCTTTCATATATAATGAGTATGCCTTT
AGAGAATCAAATGAAGCGTACCTGCATAATGCTTCCACGTATCGCTCTAA
GACCACTTTCTTACGTCATTGTTTTTCACCTTAAGGGAAACGTAAACCTA
CTGGAATTCTCCAGGTTTAATAAGTATACCTGCACACCACCGCAACATTG
TTTTAATGGGCATGTAATATGTTTCACCCTCAGGTACGTAAGCCCGGTCA
TAGCCCCATCATAACAGAGGGTCACCAAGTGCCATGTCCCGACGCTTTGG
TGGATGTGACAAATTTCAAGAGGGATGACGACGACTCCGAGGTACGGCGC
ACTATTTCGGTTTCTGAACCCACTACTTTCCCGAAATATTTCCCTATTTA
TGCCATCGGCGAACCTCAGGAATGAATGTATAATAATTGCAACTCAATAT
AAAGCTCACTACTAAATAGTTTATTGGCCGCTAGAAAATGAAACACGCTG
GGAAGAGCCATAGTAGCACAAAGAACACAAAAGGTAGGGCATGCTAGAGG
TATATAGTGCCGTACAAGAAGGGTACATTGAATGTATATATCAATGCGTG
CAGATAGGATGGTAAGATATGAATGAGCTATGGGGTTAGAGATATGACGG
CTGTTATCGTCAGGTGTGTCCCTGGTGGTAATCAACTGCCTGTGTATCTA
CTCTGGGTTCAATTTGGAAGCTTTCTGCTACAATGACGATACTTGGCTTA
ACCCCTATGGAACTCGATCTGTTTTTTTACATACTAAATTCAGTACAAAA
AATGAAATCCAGTTCCTAAAGGCTTAATCTTAGGCGTCGTGCGCGTAATT
GCGTGCTGCATTTTTGTGCGTTGTATTCGCTGTTGTTCGCACTAATAATA
ACCGGTCTTCTACCCTCTTTAAATAGAATCCCTTTGGTTTCACCCTCTCG
ATTTTAACGTTTATTTGCTTATACATTGTACGTGTTTTGTTCCACTACAC
GTTGGCGCGCTTAGAAGCTTCACGCTTAGTATAATGCGGAAATAAAAGAA
GCTAGAGATGCGCTTTACAGAGTTGTTTACTCTCTATTTTAGTAACTATT
TATTCAAATAGTTAAAGTAATGAAAAGCTAGGGTCCTGATATTGATAGCA
AGTAGTATCACAAGGAAACCTCACACTTCTTGTGAGTCGTATGGTGAGAC
TCACAGCTCAGGATGTATTGGGAAAACAACGCTTGCTCCCTCCAGCTTGA
AATAAATGCGTAATGCAATCACGTCCCTGTGCATACATGTTACTTATTCT
TGGCTTTGCATCGTAAGCGTGACCCCACGGGATATATATTTCGGGATCGC
CTATTACAACAATGTATGTGCAAGAGGGGAAGGAAACAGTTGCGGTCAAG
CAAGTGCAGGGTATTGAAGAGTATATAGTATTTCTAGAGTTTTTAGGGGC
TGAATTTAGAGATCAAAATGGACTCACGAGAAGAGGGGAGCGACTGACAA
ATGGATCATCGGTCGAACGTTTACGTTTATTATACCTCAAGAGATATTTA
ACATATCTTAAAGTTTCAAAATATGTTGTTGACGTGATTCCATCTGATTA
TTCATAGATGAGTCATTGGGCTTATATGGCTACTGATTTCATTATATAGT
AGGTCTTTAGTAGTCAATGCGTATTGCCATCACCCAACCTGTTTATTCCG
TTTGTTTCTTTAAAAGAGATTGAAATATTTCATTATTTATACAATAATAC
CACAAAAAAAGCGGAGAGCCTCTACCAGTGACTACACAATAGCCTCATCA
TCAATGATAACACTACATGTTCTTCCCTAAAAAATGCGATAGGTACTCGT
TCCTAGTGACTTTTGAAAGCAAACCTTACCCACCATTGTCTATGACGTAG
GTACCATGCGTGCAAATATAATTGTAATTACGTGGAACATGAGTGTCGTT
ATTCGACGTAAGTATTGACAGTATTTCAAATATGATGTTTCGTTGTATGA
AATATTTAAATAGCAAGCTGTTTAGGCGACGAAAAGCAAATATAAAGAGA
TAAAGTATTACTTGAAAATGCTTGGCTTCTCGAACTAGGGTAAAAAAACG
TACATACATTGTGACAAATACACTCTAGACAAACTAAGACATAAAGAAGC
AAATGCGCTTTATTGAAGAGTGTCAAAGTCTCCGATGGGAAAACACTTAA
TCGAATGAAAATGATATCAAAATCTCTCCAGAGGGAATTATTTATACGTC
CGTCATTATCCAATACAATGGTGAAGTCAGGCCGCCTCATACTTACCGGA
AAGTAGGTCTAATGGAGAAGCTGGTGCCTTTATATATATATGCAATACAT
ATATGTATGTTATGTATGTATATATTAATACCTCCCGATATACCATACGC
ACCTCACACGCCCCGTCCTGGGGGCCAATATCCCCAGGTTGTTAATATTG
AAAAGTTTGACCAGTAGTTATTTTTCCCTACACGAAACCGTTTCTACGTG
ATATAAGTATGGTGTGTTCATAACAGGGGTGGTTGCAACCAAACATGTAA
CTACCAAGGCTGTGGTGTATTTTCCCTATTTTTGCAAATGCCTGCACAGT
CTTCTGGACAAGAAGCTCCTGCACCTGTGGTTCTACTCCCTCATACACCT
GCACCTGTGGTATACCTCCGCCAAAAGTATAACGAAAATCAAAATCCGTT
TTCCTAGTTGTCTCTAATAGCTTTAGTATATTGACTTCCTTCTAGCTCGC
TCAGCGCCTTTTTCGAATCAGTGCTTACTAGTGTAGGTGGCGGATTTCCG
TCATCAAAACCTTAGGTCTGGGGTTAAGGCCCTGCTCTATTCCCTTCATG
TCGAGGTCGCATCCATCGCCAGATCGAAACCTGTCTAATGACACATATTC
GATACACTATGTTCAATTTGATGATTTGTTCTTCCCACCACCAATGAGAG
CTTTCCGAGGAGCTTTATTCCACGAACAGATTTGACAGAAAACACGGCCA
AACTATTTAAGCCGGGCATTCGCGGGTTAGACTAATCAGCGCTGACTAGC
CTACTCGTCGATGTATTTCCTCCGACAATATTTATTTCCGTTGGGCAGCA
GATGTGCGCATCCATTTTCATATATTATCTCAGATTCAGATATATGACTG
TATTGCAGTGTTATAGCGCTTACCAGCGATACCAGGACGGGTGTGGGTGG
ACGATGTGAGAAGTATAAATAGCCTCCGGCCCAGGGAGTCTGGGTCGAGC
CTGACAGGTTTTGACTTGACCTAGATCTTAGGTGGAGTTCTTTCTCTTGT
CAATGACTCTCCTTGTCCTGATCATGAATAAATCTTTGAAGTAGTTGCCG
TAATGCTGTGCAGTATGTTTCTCAACTTTCGATGCAGTGTCCAATTTAAA
ATATCATGCTTACATATATTTCAATGTAATGCTAATTTGGAAGATGCTTT
CAAGCACCAACTTTTCTCGTGTGTACCAGATTTATGTATTTATTCATCCC
CCTTTCCACGTACCTAGATTTTCCCGCTCGGTCCTTTTTTGCCTCCGTAT
TTTCCAAACAGGAAACAATGGGCACTCCAGGGCTACTAACAAGTACCATG
GACTGCTGTGCCCCTGCCGGCTCTTACTCCTACCATACGCTGCGAAACGG
AGCTCTGTCCGATTACATTCGTCTGGTGCCCTGTACTCAGGACGGATATA
CCAGGTCGACATTGTAGCGATCCCCCGCGGAGAAGTGGAGTTAAATTCGC
CTCTTGGCCTCAAGAACTCTTTTACAAAATTTACAGATCGCGAATTGGAT
TGACAGTGTTACACGTGATGTTGTACACGTGGTGTTGTATGGGGCTTTGC
TCTGGATGGTAGAGTCATTTGTTTGGCAGACATGAAATTTCCAACATACC
TTGTTGGATTGCTCCTTCCCTAAGATATGTATATATATATATAATATCTG
TATATAGTCCTAGTATATATGCATCGGTATACACTTTATGGTAGTGATTC
ACCACCTTCTCTACGAGGTGACCGCGGGTGGCATTGGTAGATTAGGTTAT
TATTATGTGAAAATTCAATCAAGCAGTAATATCAATACAACGTAACGGAA
TAATCTACCCGTGAACAAAACACTGCTGAAAGAAAATAACCAATTTGCGT
TGTAATTTTGTTGAGAGACACGATGCGCGGCGTTTTCGCTCTGCTTTAGT
TCGCATAATAAGGGTGGTCTTCTCTATAATAATACACTCCAGTGGAGGAT
TGGTGGGATTGCGCGATCACTGCTGACCGCACGAAATATATCATGAGGCT
TGTATGGCGATTGGAGAGTTATATCTCCCGCAAGAAGCTTGGCGGTCATG
GTTCAGGACCTCCCTCGTTTCCGTTCGGCATTTGAATTGAATCCTTGCGT
AGTCTCCTATGTTGAATAGCTGTCATGGGAATATGTAGCTTTGATCCGAG
AGCAGATAGGGATATTTGTAAAATGCTTTCAACAACAACGTGGTATGTCG
AGATACGTCTTGAAACTACACTCTCCCTAATTATATAATATGTGTCCGTG
GCGAGAGCATTGCCCCCGACTGGTGGGGCAGAGGGTTGGAGGTTACCTAA
ATGAATGTAGGTTGGTATTGATTGAGTGATTGATTGATTGAACTCATAAT
ACCGGTCGCCCCGGTGGTGTAAGGGTCAAGCCGTCTTCCTTGATCCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig19448:69..7067+

>mRNA_H-elongata_contig19448.5405.1 ID=mRNA_H-elongata_contig19448.5405.1|Name=mRNA_H-elongata_contig19448.5405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig19448:69..7067+ (Himanthalia elongata Himel1 dioecious)
ATGATGCAAATGGGTGGCGGTGGATTTGGCGTGTGGAACGCATGCGCCGA
TCCAGCGTATCACGTTGTTAGCACCTCGGACTACACTGGCAACAGCGATT
GGCCATGTACACAGAGCGCTACGGACGATATCTCCGTCTCCGCCTTATAT
TCAAATGGGGAGGCAAACTGGGGAGAACGATGTGGTGGGCAGCAAATGGG
TGGCGGTGGATTTGGCGTGTGGAACGCATGCGCCGATCCAGCGTATCACG
TTGTTAGCACCTCGGACTACACTGGCAACAGCGATTGGCCATGTACACAG
AGCGCTACGGACGATATCTCCGTCTCCGCCTTATATTCAAATGGGGAGGC
AAACTGGGGAGAACGATGTGGTGGGCAGAAATATGTTGAAGACTGTTCGT
ATCTACCGGAGTACCCGACGACTCTCCGCGAAGATGGTGTTCAACATGAG
GAGCCCAGCCTTATCGAGTTGTGCGAGACAGCATTCGACTGGAATAAATA
TGTTGAAGACTGTTCGTATCTACCGGAGTACCCGACGACTCTCCGCGAAG
ATGGTGTTCAACATGAGGAGCCCAGCCTTATCGAGTTGTGCGAGACAGCA
TTCGACTGGAATGTACGTAAGCCCGGTCATAGCCCCATCATAACAGAGGG
TCACCAAGTGCCATGTCCCGACGCTTTGGTGGATGTGACAAATTTCAAGA
GGGATGACGACGACTCCGAGGTACGTAAGCCCGGTCATAGCCCCATCATA
ACAGAGGGTCACCAAGTGCCATGTCCCGACGCTTTGGTGGATGTGACAAA
TTTCAAGAGGGATGACGACGACTCCGAGGAAACAATGGGCACTCCAGGGC
TACTAACAAGTACCATGGACTGCTGTGCCCCTGCCGGCTCTTACTCCTAC
CATACGCTGCGAAACGGAGCTCTGTCCGATTACATTCGTCTGGTGCCCTG
TACTCAGGACGGATATACCAGGTCGACATTGTAGGAAACAATGGGCACTC
CAGGGCTACTAACAAGTACCATGGACTGCTGTGCCCCTGCCGGCTCTTAC
TCCTACCATACGCTGCGAAACGGAGCTCTGTCCGATTACATTCGTCTGGT
GCCCTGTACTCAGGACGGATATACCAGGTCGACATTGTAG
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