mRNA_H-elongata_contig19440.5400.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: D8LD88_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD88_ECTSI) HSP 1 Score: 211 bits (538), Expect = 1.360e-62 Identity = 122/197 (61.93%), Postives = 135/197 (68.53%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVA-------ESPRGVGRDGSI------------GGDGDACGDRENAGGSRGGVDGGDTVDVVVTSERSWEEGDDVDGSGDDERQARELDWRSDPAHLRAERDVFWLMMALTSRLGGVGSGLGMRELWLPGVPQLKV 534
RDVGRTFP Q LF+S+NGPGQN+LANVLKA LKTNPDVGYCQGMNFVAGSLLLAC+TRDPAV + R V D S GGDGD A ++ + TS +WEE DD DGSG+DE Q +WRS PAHLRAE+DVFWLM+ALTSRL GVGSGLGMRELWLPGVPQLKV
Sbjct: 202 RDVGRTFPRQDLFKSRNGPGQNLLANVLKACLKTNPDVGYCQGMNFVAGSLLLACATRDPAVGAPCYPNCDRRRSVRGDSSXXXXXXXXXXXXDGGDGDVSPFVATA----------TSMALSPTSASAWEEWDDFDGSGEDESQP---EWRSGPAHLRAEKDVFWLMLALTSRLSGVGSGLGMRELWLPGVPQLKV 385
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A6H5KV33_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV33_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.570e-31 Identity = 79/145 (54.48%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVA----------ESPRGVGR-------DGSIGGDGDACGDRENAGGSRGGVDGGDTVDVVVTSERSWEEGDDVDGSGDDERQAR 384
RDVGRTFP Q LF+S+NGPGQN+LANVLKA LKTNPDVGYCQGMNFVAGSLLLAC+TRDPAV S RG D +GGDGD A + + TS +WEE DD DGSG+D+ Q R
Sbjct: 203 RDVGRTFPRQDLFKSRNGPGQNLLANVLKACLKTNPDVGYCQGMNFVAGSLLLACATRDPAVGAPCYPNCDRRRSVRGDSSSSVVDDDDAGVGGDGDVSPFVATAA----------STALSPTSASAWEEWDDFDGSGEDDSQVR 337
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A835YVP9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP9_9STRA) HSP 1 Score: 102 bits (253), Expect = 6.520e-22 Identity = 74/210 (35.24%), Postives = 99/210 (47.14%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVAESPRGVGRDGSIGGDGDACGDRENAGGSRGGVDGGDTVDVVVTSERSWEEGDDV--------------------DGSGDDERQARELDWRSDPAHLRAERDVFWLMMALTSRLGGVGSGLG------------MRELWLPGVPQLKV 534
RDV RTFP FR ++GPG+NML+NVL+A +PDVGYCQGMNFVAG+LLLA + P + P DA D + DG + V + + + D + S D R +DW D HLR E+DVFW+M AL ++ G G+ + ELWLPGVP++K+
Sbjct: 118 RDVCRTFPGLAFFRRRDGPGENMLSNVLRACAIAHPDVGYCQGMNFVAGALLLAHLSSHPDMTPHPED-----------DAAHDAHS--------DGSQSSQEVKHAHEVFCDAKDAPLYXXXXXXXXXXXXXXXXXNTSRDASPDPRTIDWWPDREHLRMEQDVFWMMAALLTK-GRAGAEAHDELCLKARERHEVEELWLPGVPEMKL 307
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A7S3UWK3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWK3_HETAK) HSP 1 Score: 74.3 bits (181), Expect = 8.190e-13 Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVAESPR 201
RD+GRT+P LFR G GQ MLANVL A L + DVGYCQGMNFVAG+LLLA A S R
Sbjct: 34 RDLGRTYPAHPLFRDPCGAGQQMLANVLNACLHYHRDVGYCQGMNFVAGALLLAHLEGTAAAGRSRR 100
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A0S4TE76_CRYHO (Rab-GAP TBC domain-containing protein n=4 Tax=Cryptosporidium TaxID=5806 RepID=A0A0S4TE76_CRYHO) HSP 1 Score: 73.2 bits (178), Expect = 4.820e-12 Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 177
RD+ RTFP LFR KN GQN L +VL+A+ NPDVGYCQGM F+ G LL+ S D
Sbjct: 159 RDISRTFPRHSLFRDKNNHGQNSLFSVLRAYSLYNPDVGYCQGMGFIVGVLLMYMSEED 217
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: G4XH92_BISBE (Pollux (Fragment) n=1 Tax=Biston betularia TaxID=82595 RepID=G4XH92_BISBE) HSP 1 Score: 68.2 bits (165), Expect = 1.240e-11 Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 4 DVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLL 159
D+GRTFP F S GPGQ L N+LKA+ +PDVGYCQG++FVAG LLL
Sbjct: 54 DLGRTFPKHSYFASALGPGQLALYNILKAYSLVDPDVGYCQGLSFVAGVLLL 105
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A1J4MGN7_9CRYT (TBC domain-containing protein n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MGN7_9CRYT) HSP 1 Score: 71.2 bits (173), Expect = 2.340e-11 Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 177
RD+ RTFP LFR +N GQN L +VL+A+ NPDVGYCQGM F+ G LL+ S D
Sbjct: 161 RDISRTFPRHCLFRDRNNHGQNSLFSVLRAYSLYNPDVGYCQGMGFIVGVLLMYMSEED 219
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A453H3T5_AEGTS (Rab-GAP TBC domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453H3T5_AEGTS) HSP 1 Score: 66.2 bits (160), Expect = 6.770e-11 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 177
RD+ RTFP+ F+ ++GPGQ L NVLKA+ + DVGY QGM F+AG LLL S D
Sbjct: 17 RDISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEED 75
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A2K1X6B1_POPTR (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K1X6B1_POPTR) HSP 1 Score: 65.5 bits (158), Expect = 7.610e-11 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 177
RD+ RTFP+ F+ ++GPGQ L NVLKA+ + DVGY QGM F+AG LLL S D
Sbjct: 30 RDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEED 88
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A1R2BHZ2_9CILI (Rab-GAP TBC domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BHZ2_9CILI) HSP 1 Score: 67.8 bits (164), Expect = 1.010e-10 Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACS 168
+D+GRTFP++ LF+S G GQ + N+LKA+ + D+GYCQGMNF+ G+LL+ S
Sbjct: 4 KDIGRTFPHESLFKSFCGFGQTCMFNILKAYASYDSDIGYCQGMNFIVGTLLMHLS 59 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19440.5400.1 >prot_H-elongata_contig19440.5400.1 ID=prot_H-elongata_contig19440.5400.1|Name=mRNA_H-elongata_contig19440.5400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSback to top mRNA from alignment at H-elongata_contig19440:4012..6447- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19440.5400.1 ID=mRNA_H-elongata_contig19440.5400.1|Name=mRNA_H-elongata_contig19440.5400.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2436bp|location=Sequence derived from alignment at H-elongata_contig19440:4012..6447- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19440:4012..6447- >mRNA_H-elongata_contig19440.5400.1 ID=mRNA_H-elongata_contig19440.5400.1|Name=mRNA_H-elongata_contig19440.5400.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig19440:4012..6447- (Himanthalia elongata Himel1 dioecious)back to top |