mRNA_H-elongata_contig1941.5392.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1941.5392.1
Unique NamemRNA_H-elongata_contig1941.5392.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: D7FYJ6_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ6_ECTSI)

HSP 1 Score: 602 bits (1551), Expect = 7.980e-197
Identity = 307/434 (70.74%), Postives = 344/434 (79.26%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPW--------------------------------------------------GASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            DTLRLLTLWFAHGG+ESV+R M++G+ ACGVDTWLGVVPQLIARVH +SPRVT+L+RELL+RIGRKHPQALIYPITVASK SSRPRQEAAGAVMADMRK YPVLVEEASLVSR +IKVAMTWPEVWHEGL+EASRMYFGDGN EGML +LQMLH LLPW                                                  G SS+++ G+    AS        DG A DTVRGVAFLHLHGRDLAEAWEWVQR+   + E D+LQAWDIYYHVF+KI+RQL TL+ IELRHVAPALP ANGLQLAVPGTYRAH +VVRI+SFAPTVEVITWSK RPRRMTIHG +GVPY++LLKG+EDLRQDERVMQLFGL+NALL +ER TAR NLSI+R+AI+PLSNNSGLIGWVP+CDTM++LIK +RESK
Sbjct: 1199 DTLRLLTLWFAHGGFESVHREMSLGIQACGVDTWLGVVPQLIARVHAASPRVTKLLRELLVRIGRKHPQALIYPITVASKNSSRPRQEAAGAVMADMRKQYPVLVEEASLVSRAMIKVAMTWPEVWHEGLEEASRMYFGDGNVEGMLRRLQMLHDLLPWETPPASAVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTSSTSSPGSDDGSAST-------DGPAADTVRGVAFLHLHGRDLAEAWEWVQRYQACRREADILQAWDIYYHVFRKISRQLTTLKYIELRHVAPALPQANGLQLAVPGTYRAHADVVRIRSFAPTVEVITWSKQRPRRMTIHGGDGVPYLFLLKGREDLRQDERVMQLFGLVNALLASERKTARFNLSIQRFAILPLSNNSGLIGWVPSCDTMHQLIKHYRESK 1625          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A6H5K2T8_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T8_9PHAE)

HSP 1 Score: 518 bits (1334), Expect = 2.420e-166
Identity = 269/384 (70.05%), Postives = 306/384 (79.69%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            DTLRLLTLWFAHGG+ESV+R M++G+ ACGVDTWLGVVPQLIARVH +SPRVT+L+RELL+RIGRKHPQALIYPITVASK SSRPRQEAAGAVMADMRK YPVLVEEASLVSR +IK                                          G SS+++ G      S + +A A D AA DTVRGVAFLHLHGRDLAEAWEWVQR+   + E D+LQAWDIYY+VF+KI+RQL TL+ IELRHVAPALP ANGLQLAVPGTYRAH +VVRI+SFAPTVEVITWSK RPRRMTIHG +G PY++LLKG+EDLRQDERVMQLFGL+NALL +ER TAR NLSI+R+AI+PLSNNSGLIGWVP+CDTM++LIK +RESK
Sbjct: 1066 DTLRLLTLWFAHGGFESVHREMSLGIQACGVDTWLGVVPQLIARVHAASPRVTKLLRELLVRIGRKHPQALIYPITVASKNSSRPRQEAAGAVMADMRKKYPVLVEEASLVSRSMIK------------------------------------------GTSSTSSPG------SDDGSASAYDPAA-DTVRGVAFLHLHGRDLAEAWEWVQRYQAYRREADILQAWDIYYYVFRKISRQLTTLKYIELRHVAPALPQANGLQLAVPGTYRAHADVVRIRSFAPTVEVITWSKQRPRRMTIHGGDGAPYLFLLKGREDLRQDERVMQLFGLVNALLASERKTARFNLSIQRFAILPLSNNSGLIGWVPSCDTMHQLIKHYRESK 1400          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A7J7PM10_9CHLO (Kinase-like domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PM10_9CHLO)

HSP 1 Score: 396 bits (1017), Expect = 1.320e-130
Identity = 198/384 (51.56%), Postives = 271/384 (70.57%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            D LRLLTLWF  G    V   +  G     +DTWL V+PQ+IAR+HT++P+V  L+  LL+RIGR HPQAL+YP+ VA+K+ S  R++AA AV+  +R H   LVE+A LVS+ELI++A+ W E+WHE L+EASR+YFG+ N E ML  L  LH L+     S                          T++ +AF+  +GR+L+EA+EW+ ++  S+ E +L QAWD+YYHVF++I +QL +L  +EL++VAPAL  A G++LAVPGTY A E +V I +FAP ++VI+ SK RPR++TIHG +G  Y++LLKG EDLRQDERVMQLFGL+N++L  ER TA  +LSI RYA++PLS NSGLIGWVPNCDT++ LI+++RES+
Sbjct:   75 DILRLLTLWFTWGSAPDVEAALQEGFGLVSIDTWLVVIPQIIARIHTNNPQVRSLIHSLLVRIGRHHPQALMYPLLVAAKSQSPSRRQAAYAVLDVVRTHSATLVEQAQLVSQELIRIAILWHEMWHEALEEASRLYFGESNVEAMLGVLLPLHELMEKTGPS--------------------------TLKEIAFVQAYGRELSEAYEWLSKYRLSRKEAELHQAWDLYYHVFKRINKQLHSLTTLELQYVAPALVRAQGMELAVPGTYIAGEPLVTIAAFAPQLQVIS-SKQRPRKLTIHGGDGAEYMFLLKGHEDLRQDERVMQLFGLVNSMLCAERSTAERDLSIARYAVIPLSPNSGLIGWVPNCDTLHALIREYRESR 431          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A383VAK2_TETOB (Non-specific serine/threonine protein kinase (Fragment) n=5 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAK2_TETOB)

HSP 1 Score: 396 bits (1017), Expect = 1.690e-128
Identity = 197/382 (51.57%), Postives = 270/382 (70.68%), Query Frame = 1
Query:    7 LRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            LRLLTLWF  G    V   +  G     +DTWL V+PQ+IAR+HT++P+V  L+  LL+RIGR HPQAL+YP+ VA+K+ S  R++AA AV+  +R H   LVE+A LVS+ELI++A+ W E+WHE L+EASR+YFG+ N E ML  L  LH L+                          D     T++ +AF+  +GR+L+EA+EW+ ++  S+ E +L QAWD+YYHVF++I +QL +L  +EL++VAPAL  A G++LAVPGTY A E +V I +FAP ++VI+ SK RPR++TIHG +G  Y++LLKG EDLRQDERVMQLFGL+N++L  ER TA  +LSI RYA++PLS NSGLIGWVPNCDT++ LI+++RES+
Sbjct:   86 LRLLTLWFTWGSAPDVEAALQEGFGLVSIDTWLVVIPQIIARIHTNNPQVRSLIHSLLVRIGRHHPQALMYPLLVAAKSQSPSRRQAAYAVLDVVRTHSATLVEQAQLVSQELIRIAILWHEMWHEALEEASRLYFGESNVEAMLGVLLPLHELM--------------------------DKTGPSTLKEIAFVQAYGRELSEAYEWLSKYRGSRKEAELHQAWDLYYHVFKRINKQLHSLTTLELQYVAPALVRAQGMELAVPGTYIAGEPLVTIAAFAPQLQVIS-SKQRPRKLTIHGGDGAEYMFLLKGHEDLRQDERVMQLFGLVNSMLSAERSTAERDLSIARYAVIPLSPNSGLIGWVPNCDTLHALIREYRESR 440          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A061RF81_9CHLO (FKBP12-rapamycin complex-associated protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RF81_9CHLO)

HSP 1 Score: 385 bits (990), Expect = 2.820e-127
Identity = 198/384 (51.56%), Postives = 261/384 (67.97%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            D LRLLTLWF +G    V   +  G     +DTWL V+PQ+IAR+HT+   V  L+  LL+RIGR HPQAL+YP+ VA K+ S  R+ AA  V+  +R+H P LVE+A LVS ELI++A+ W E+WHE L+EASR+YFG+ N EGML  L  LH ++     S                          T++ +AF+  +GR+L EA+EW  ++  S+ E +L QAWD+YYHVF++I +QL T+  +EL++VAPAL  A GL+LAVPGTY A E +V I +FAP + VIT SK RPR++TIHG +G  Y++LLKG EDLRQDERVMQLFGLIN LL  +R TA  +LSI RYA +PLS NSGLIGWVPN DT + LI+++RE++
Sbjct:   22 DILRLLTLWFNYGHDLDVESALQEGFGHVSIDTWLVVIPQIIARIHTNISPVRNLINTLLIRIGRHHPQALMYPLRVACKSQSAGRRSAAMNVVEHVRQHSPTLVEQAQLVSHELIRIAILWHEMWHEALEEASRLYFGESNVEGMLNTLLPLHEMMEKQGPS--------------------------TLKEIAFVQAYGRELQEAYEWCLKYKSSRKEAELHQAWDLYYHVFKRINKQLPTMTVLELQYVAPALVRAQGLELAVPGTYIAGEPLVTIAAFAPQLHVIT-SKQRPRKLTIHGGDGADYMFLLKGHEDLRQDERVMQLFGLINTLLSNDRVTAERDLSIARYACIPLSPNSGLIGWVPNTDTFHALIREYREAR 378          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A8D2LCW2_VARKO (Non-specific serine/threonine protein kinase n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LCW2_VARKO)

HSP 1 Score: 387 bits (995), Expect = 1.560e-125
Identity = 193/384 (50.26%), Postives = 267/384 (69.53%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            DTLR+LTLWF +G +  VN  +  G+ A  +DTWL V+PQLIAR+ T  P V RL+ +LL  IGR HPQALIYP+TVASK+++  R  AA  ++ +M +H   LV++A +VS ELI+VA+ W E+WHEGL+EASR+YFG+ N +GM E L+ LH ++  G                             T++  +F   +GRDL EA EW +++M+S    DL QAWD+YYHVF++I++QL  L  +EL++V+P L     L+LAVPGTY  +++++RIQS AP+++VIT SK RPR++T+ G NG  +++LLKG EDLRQDERVMQLFGL+N LL  +  + R NLSI+RYA++PLS NSGLIGWVP+CDT++ LI+ +RE K
Sbjct:   92 DTLRVLTLWFDYGHWPEVNEALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIYQLLTDIGRYHPQALIYPLTVASKSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVAILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQ---------------------------TLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISKQLPQLTSLELQYVSPKLLKCRDLELAVPGTYDPNQQIIRIQSIAPSLQVIT-SKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKK 447          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A7S0RY50_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RY50_9CHLO)

HSP 1 Score: 399 bits (1025), Expect = 2.140e-125
Identity = 198/384 (51.56%), Postives = 272/384 (70.83%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            D LRLLTLWF HG Y  V   +  G +   +DTWL V+PQ+IAR+HT++  V +L+ +LL++IGR HPQAL+YP+ VA+K+ S  R+ AA AV+  +R+H P LVE+A LVS ELI++A+ W E+WHEGL+EASR+YFG+ N EGML  L  LH ++                          D     T++ +AF+  +GR+L EA+EW+ +F  S+ E +L QAWD+YYHVF++I +QL  L  +EL++VAPAL  A G++LAVPGTY A E +V I +FAP + VI+ SK RPR++TIHG +G  Y++LLKG EDLRQDERVMQLFGL+N +L  +R TA  +L+I RYA++PLS NSGLIGWVPNCDT++ LI++FR+++
Sbjct:  670 DILRLLTLWFNHGHYADVGAALQFGFSLVSIDTWLVVIPQVIARIHTNNATVRQLIHQLLVKIGRHHPQALMYPLLVATKSQSPGRRTAAYAVLDAIRQHSPSLVEQAQLVSHELIRMAILWHEMWHEGLEEASRLYFGESNVEGMLATLLPLHDMM--------------------------DKNGPTTLKEIAFVQAYGRELTEAYEWLVKFRASRKEAELHQAWDLYYHVFKRINKQLHGLTTLELQYVAPALVRAQGMELAVPGTYIAGEPLVTIAAFAPQLHVIS-SKQRPRKLTIHGGDGAEYMFLLKGHEDLRQDERVMQLFGLVNTMLAADRATAERDLTIARYAVIPLSPNSGLIGWVPNCDTLHALIREFRDAR 1026          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A2K6EJ36_PROCO (Non-specific serine/threonine protein kinase n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6EJ36_PROCO)

HSP 1 Score: 387 bits (993), Expect = 3.750e-125
Identity = 193/384 (50.26%), Postives = 266/384 (69.27%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            DTLR+LTLWF +G +  VN  +  G+ A  +DTWL V+PQLIAR+ T  P V RL+ +LL  IGR HPQALIYP+TVASK+++  R  AA  ++ +M +H   LV++A +VS ELI+VA+ W E+WHEGL+EASR+YFG+ N +GM E L+ LH ++  G                             T++  +F   +GRDL EA EW +++M+S    DL QAWD+YYHVF++I++QL  L  +EL++V+P L     L+LAVPGTY  ++ ++RIQS AP+++VIT SK RPR++T+ G NG  +++LLKG EDLRQDERVMQLFGL+N LL  +  + R NLSI+RYA++PLS NSGLIGWVP+CDT++ LI+ +RE K
Sbjct:  107 DTLRVLTLWFDYGHWPDVNEALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIHQLLTDIGRYHPQALIYPLTVASKSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVAILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQ---------------------------TLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISKQLPQLTSLELQYVSPKLLMCRDLELAVPGTYDPNQPIIRIQSIAPSLQVIT-SKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKK 462          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: B3KX59_HUMAN (Non-specific serine/threonine protein kinase n=1 Tax=Homo sapiens TaxID=9606 RepID=B3KX59_HUMAN)

HSP 1 Score: 387 bits (993), Expect = 4.760e-125
Identity = 193/384 (50.26%), Postives = 266/384 (69.27%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            DTLR+LTLWF +G +  VN  +  G+ A  +DTWL V+PQLIAR+ T  P V RL+ +LL  IGR HPQALIYP+TVASK+++  R  AA  ++ +M +H   LV++A +VS ELI+VA+ W E+WHEGL+EASR+YFG+ N +GM E L+ LH ++  G                             T++  +F   +GRDL EA EW +++M+S    DL QAWD+YYHVF++I++QL  L  +EL++V+P L     L+LAVPGTY  ++ ++RIQS AP+++VIT SK RPR++T+ G NG  +++LLKG EDLRQDERVMQLFGL+N LL  +  + R NLSI+RYA++PLS NSGLIGWVP+CDT++ LI+ +RE K
Sbjct:  107 DTLRVLTLWFDYGHWPDVNEALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIHQLLTDIGRYHPQALIYPLTVASKSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVAILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQ---------------------------TLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISKQLPQLTSLELQYVSPKLLMCRDLELAVPGTYDPNQPIIRIQSIAPSLQVIT-SKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKK 462          
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Match: A0A067BIK9_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BIK9_SAPPC)

HSP 1 Score: 385 bits (989), Expect = 4.950e-125
Identity = 198/387 (51.16%), Postives = 270/387 (69.77%), Query Frame = 1
Query:    1 DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSPRVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKHYPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKLQMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLHGRDLAEAWEWVQRFMR---SKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELRHVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMTIHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIRRYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK 1152
            D LR+LTLWFA+G    V+  +  G  +  ++TWL V+PQLIAR+H+  PR+   +  LL  IG +HP ALIYP++VA K+    RQ AA A+M  MRK+Y  LV EA LVSRELI+VA+ W E+WHEGL+EASR+YFG+ + EGM+  L+ LH ++  G               PE            T+R V+F    GRDL EA++W+QR++    +K E DL QAWD YYHVF++I +QL  L  +EL++V+P L HA+ LQLAVPGTYRA   +V+I+SF PT+ V+T SK RPRR+TI G NG+ Y++LLKG EDLRQDERV QLFGL+NALL  +R T++ +L I RY ++PLS+N+G++GWVPNCDT+++LI+ +RE++
Sbjct:  172 DILRVLTLWFAYGHRSDVHGALVSGFQSVSIETWLIVIPQLIARIHSPHPRIQSQLHRLLSAIGTQHPHALIYPLSVALKSPLEVRQRAAEAIMNSMRKNYVDLVNEALLVSRELIRVAILWHELWHEGLEEASRLYFGEHDVEGMMAVLEPLHAMMDKG---------------PE------------TLREVSFHQAFGRDLKEAYDWIQRYLSPHGAKNESDLNQAWDRYYHVFRRINKQLPQLTTLELQYVSPNLLHAHELQLAVPGTYRAGHAIVKIRSFVPTMLVLT-SKQRPRRITIVGTNGLEYMFLLKGHEDLRQDERVTQLFGLVNALLINDRTTSKKDLKITRYPVIPLSHNAGIVGWVPNCDTLHQLIRDYREAR 530          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1941.5392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ6_ECTSI7.980e-19770.74Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5K2T8_9PHAE2.420e-16670.05Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7J7PM10_9CHLO1.320e-13051.56Kinase-like domain-containing protein n=1 Tax=Scen... [more]
A0A383VAK2_TETOB1.690e-12851.57Non-specific serine/threonine protein kinase (Frag... [more]
A0A061RF81_9CHLO2.820e-12751.56FKBP12-rapamycin complex-associated protein (Fragm... [more]
A0A8D2LCW2_VARKO1.560e-12550.26Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S0RY50_9CHLO2.140e-12551.56Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A2K6EJ36_PROCO3.750e-12550.26Non-specific serine/threonine protein kinase n=1 T... [more]
B3KX59_HUMAN4.760e-12550.26Non-specific serine/threonine protein kinase n=1 T... [more]
A0A067BIK9_SAPPC4.950e-12551.16Uncharacterized protein (Fragment) n=2 Tax=Saprole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1941contigH-elongata_contig1941:420..12137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score608.6
Seed ortholog evalue2e-171
Seed eggNOG ortholog2880.D7FYJ6
Preferred nameTOR1
KEGG koko:K07203
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Exons9
Model size1152
Cds size1152
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.0494523-CDS-H-elongata_contig1941:419..6611622930105.0494523-CDS-H-elongata_contig1941:419..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 420..661 -
1691679281.9805424-CDS-H-elongata_contig1941:419..6611691679281.9805424-CDS-H-elongata_contig1941:419..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 420..661 -
1622930105.0661893-CDS-H-elongata_contig1941:1707..18051622930105.0661893-CDS-H-elongata_contig1941:1707..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 1708..1805 -
1691679281.9911587-CDS-H-elongata_contig1941:1707..18051691679281.9911587-CDS-H-elongata_contig1941:1707..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 1708..1805 -
1622930105.0839658-CDS-H-elongata_contig1941:3332..34691622930105.0839658-CDS-H-elongata_contig1941:3332..3469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 3333..3469 -
1691679281.9994276-CDS-H-elongata_contig1941:3332..34691691679281.9994276-CDS-H-elongata_contig1941:3332..3469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 3333..3469 -
1622930105.1263611-CDS-H-elongata_contig1941:4244..44661622930105.1263611-CDS-H-elongata_contig1941:4244..4466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 4245..4466 -
1691679282.0075479-CDS-H-elongata_contig1941:4244..44661691679282.0075479-CDS-H-elongata_contig1941:4244..4466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 4245..4466 -
1622930105.157512-CDS-H-elongata_contig1941:7748..78501622930105.157512-CDS-H-elongata_contig1941:7748..7850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 7749..7850 -
1691679282.0154176-CDS-H-elongata_contig1941:7748..78501691679282.0154176-CDS-H-elongata_contig1941:7748..7850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 7749..7850 -
1622930105.1783092-CDS-H-elongata_contig1941:9855..99421622930105.1783092-CDS-H-elongata_contig1941:9855..9942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 9856..9942 -
1691679282.0241761-CDS-H-elongata_contig1941:9855..99421691679282.0241761-CDS-H-elongata_contig1941:9855..9942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 9856..9942 -
1622930105.1973343-CDS-H-elongata_contig1941:10834..108911622930105.1973343-CDS-H-elongata_contig1941:10834..10891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 10835..10891 -
1691679282.032639-CDS-H-elongata_contig1941:10834..108911691679282.032639-CDS-H-elongata_contig1941:10834..10891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 10835..10891 -
1622930105.2105606-CDS-H-elongata_contig1941:11643..117991622930105.2105606-CDS-H-elongata_contig1941:11643..11799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 11644..11799 -
1691679282.0480692-CDS-H-elongata_contig1941:11643..117991691679282.0480692-CDS-H-elongata_contig1941:11643..11799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 11644..11799 -
1622930105.224374-CDS-H-elongata_contig1941:12086..121371622930105.224374-CDS-H-elongata_contig1941:12086..12137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 12087..12137 -
1691679282.0595586-CDS-H-elongata_contig1941:12086..121371691679282.0595586-CDS-H-elongata_contig1941:12086..12137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1941 12087..12137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1941.5392.1prot_H-elongata_contig1941.5392.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1941 420..12137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1941.5392.1

>prot_H-elongata_contig1941.5392.1 ID=prot_H-elongata_contig1941.5392.1|Name=mRNA_H-elongata_contig1941.5392.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
DTLRLLTLWFAHGGYESVNRVMAVGLAACGVDTWLGVVPQLIARVHTSSP
RVTRLVRELLMRIGRKHPQALIYPITVASKTSSRPRQEAAGAVMADMRKH
YPVLVEEASLVSRELIKVAMTWPEVWHEGLDEASRMYFGDGNEEGMLEKL
QMLHHLLPWGASSSATAGAWPFHASPEANALALDGAAVDTVRGVAFLHLH
GRDLAEAWEWVQRFMRSKCEVDLLQAWDIYYHVFQKITRQLKTLRCIELR
HVAPALPHANGLQLAVPGTYRAHEEVVRIQSFAPTVEVITWSKHRPRRMT
IHGVNGVPYIYLLKGKEDLRQDERVMQLFGLINALLQTERPTARVNLSIR
RYAIMPLSNNSGLIGWVPNCDTMYKLIKQFRESK
back to top

mRNA from alignment at H-elongata_contig1941:420..12137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1941.5392.1 ID=mRNA_H-elongata_contig1941.5392.1|Name=mRNA_H-elongata_contig1941.5392.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=11718bp|location=Sequence derived from alignment at H-elongata_contig1941:420..12137- (Himanthalia elongata Himel1 dioecious)
GACACTCTACGATTGTTGACCCTCTGGTTCGCCCACGGAGGTTACGAATC GGTGAGATGGCCCGGGATGCATAGTACTTGTTATTAGTATATAAACCTGC ATTGTTTTATGTCAAAGTAGGAACATACGGGGGGTGTCAGTAACAACAGG TGTGGTTTCATTTTTTCTTCTTTTCTGTTCCGTTTCTGTTCGTTCCGTTT CGATTTGTCCCGTTTTGTTTTTGATTCGCTTCGCTTCGTTTTAGTTCAGT TCAGTTTAGTTCAATTCAATTCAATTCATTCCGTTTGTCGATTCATTCCG ATTCGATTGGTGCCGTTTCGGTGCGTACTCTGTTTCAGGTGAATCGCGTG ATGGCCGTCGGGCTCGCGGCGTGCGGTGTTGACACGTGGCTAGGGGTAGT ACCGCAGCTGATCGCGAGGGTCCACACATCGTCTCCGAGAGTCACCCGCC TTGTCAGGGAGCTGCTCATGCGGATCGGTCGCAAGCACCCGCAGGTAATG GAATGCAGCGACGGCGGCGACGGCCTTAAATAGCACTAACCTTAGCGGGC TTGACGTGCGTTTTGTCTTAAAACGAGAAAACACTCGGATCGGAAATATG GAAGGTTTTCAAGGGAACGGGGGCGGGGGGCGGGGGGAGCGGGATCACAC TTACCCTGAGATAAGAGAGAAGTATAGACGCGTGCATGTATGATAATGAA ACGATGTTGGTACAGTGCAGGCTCTTACTTCAATGGGGCTTGGAATAGTA CATAGGCTATATGTTATAGGTTATAGGCTATAGGCTTTGATTACGTGCTG TTCTGGTAGTCCACATGCGCTACATCCGCCCGTGACTGTGGTATGCTGCG ACCGTAGTCGTCGTGGTTGGGGGCAGCGTTTGTAGGGGGCTTTAAGAGGG TCCGACACATCCGAACAACCGAAAAAGCAAAGCCATTGTGACGGTACCTA TCCGGGAAACGGCGGCCCGCCTCCGGAGTCTCTTCTGGATTGCTCCCGCC TATACCAGTGTCTACACTGCACTTCACGCCACCCCTCTTCCTTTTTCAAA AAAGGAAAGGACGATTGGTCTCGTCGTCGTGACATAACGGGAGCAACATT TTGATATTTTCTCCACGCACTCGAAACTGTACAATGGGCCTCTCTCATTT TGTATCGTTGCCCCTCCCCCCCCCACACCCCCCCACACCCCCCCCTTTCA CGCCATCTTTCTTCTCCCCCTGACATTCGCCTACTTCCCATCAAAGGCTT TGATTTATCCGATCACCGTGGCGAGCAAAACATCTTCCCGGCCAAGACAA GAGGTGGGGCGTCAATTGAAGGTTTCCAAGGGTTTTGAGAAGTTTTTGAA GGCGTGTTTTGGAGGGGAGAGTGGGGTCAAGTGATGGACACACAAGAGTA GAGATCGTGTTTGGGGCGTGTTTTATAGGCGGGGGGCCAGGGTGGAGGGT AGGGGTAATTGGATATTTCAAAGTGTTCAATATTTATTTGAAAGTATTTT TTTCTGGTGGGAGGGGGTTGGCGAGAGGGTAGGGGGAAGTGTGAATGGGA GGAGGGTTCCAAGGGTATGTTCGTTGGAGGCGTTACAATTCACGGTTGGT TTAGGAGTATAATATGGCAAGAAAGAGCTAGCGCTGTAGGTGGGGACAAT CGTTGGTTGTATATATTATTTTCATGTTTGTAGGTGTATTGTATGGGGCT GTATATAATAAACGCATTCCGACCAACGAAATACAACCGAAAGGGGGCGT TTTCTTGCCAACCCCGGCTTTGAGTCCAGTCGATCCCATACATGTGTAGG TATGCCTGCTATCTGCTAAGTACGTAGTTTTCCTCCCCCCTCCCCCCTCG ATGACCCCCTCGATGACCCCCTCGATGACCCCCTCGATCCCCCTGATCCC CCCGATCCCGGTGGTGGTGAAATGAGCCGCGGCAATCTCGAACTCGAAAA ACGTTTGTTTTGTGTGTGTATGTGTGTGTGTGTGTGTGTATTTATTAAAT TGTACATAACCGCGCAATCTGGCTCTGTCATTCTAGCTCTTCTAGGCTAC TCTCACATTGATCCTCCCAATGGGGGATTCAGTGTGTGTGTATATATATA TATATATATATATATGTGTGTATGGATATGAGCCAGTTGTTTTGTATGTG TGTGTGTTTATTTGTCGTGGTGCGGTGATGGCGGACATGCGGTAGGCGGC AGGTGCGGTGATGGCGGACATGCGCAAACACTATCCGGTGCTGGTAGAAG AAGCATCGCTTGTTTCGCGGGAGCTAATCAAGGTCAGTCTTGGGGTGGGG TTGTGGAGTTTTGGAGGCGGGAAGAGCGACTGGGGAGAGTATACTGATGT TAAACGCTTGTCGTATCTTTCCGGAAATAAACTATGCATTCCAACAATGG CGAGAAAATATATATACCGTGTTTTCGCCGGCCAGGCTGCGTTTTACGAG TTGGAATTAGTTCATGTTTTTTATTAGCCATTATTGTTGCGGTTGCTATG CAATGCTATACTCGACATGCCGTGGGATGATCGGACACTGGACATATTAT AGTAAAATATGTACTATACTAATACAAAACTAATATTATACTTAATGCTA TGCTACGTACTATATTATATTATGCTATAGTATAATATACTATACTATAT TACAGTATGCAACATACTATGCTATACTATACTGTACTATACTATACTAA CTATACTTTTTCTTTAATAAAAATACTATATTATACTATACTATATTATA CTGTACTATAATATATTATACTATACTATATTATACTGTACTATAATATA TTATACTATACTATACTATACTATACTATACTATACTATACTGTACTATA ATATATTATACTATACTATACTATACTATACTATACTATACTATACTATA CTGTACTATACTATACTGTACTAAAACTATACTATACTATACTATAGTAT GCTATACTCCCCAGTCCCGCAAAGGGAAATTGATCTCCACGCTAACGCAC TATTAATAGCGCCATTCGGACACCACATTAACAATAGCATATATGTGTGA TACATTCAAGACTATATTCTGCTCACGAATACTCTTGGTGGAGTACTCTC AACAAGTACTGTATATGGTTACTCTCGGGGCATTCCATAACGTGATGCGT CTCATCCTCTAGGGAAAAGAGACGAGACTCTTCGACCGACCAAGGCCTCT GCACTCACAGGATACCCTGTATGGACTGAGAACCTTTCCCCCGTGCCCCA TAAATATAGTTTTTTTCAGCTGCATGTCACAAAAAGACGATAGACAACCC AAGAGGGGGAACATGGGAGGTGGACGGGGGAGGTTCGGTGAAATCGTGTA GGTTTCATCGATTCGAAGAGACCATATAACAGCTGCCGCTCGCCCCCTTT TTTCGAGGGAAGGAATCTCTCTATTCTAAATATAATGTTTTTTCTTCAAC GATTTAATATTGTGTACATGCAGTTAATTGTTCACGGGCTTGGATAGACC CCGATCGGGGATCTTCATGAGCAGTCCCCGATGTGCGTTTATGCATTGCA ACTGTCGCGCTTATAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAA CATTATTTGGACGGGGGGGGGGGGCGGAGGTAATGGTTGTTCCCACCACA TGATCGATCGTCAATGGAAAATCAATCGTTCCTTCCTACTTTTAGGAATA TGGCACAAAAATGTCTTCCTACTATATTGCTTATATCAGATGACGCCTTC TCAAGCCACTTGTTACCTCCCAGCTTCACCACCAACTTCGTCTGGCTGCC TCATGCTTTCAAGTATCAATCTCTCCCCCCCCCGAGTTCAGACATATATA CTCTTCTCCTCTTGATATAGGGGACATTCTGGCACTACATGGATCAAGGA GTTTATTTGTTGTTGTGACCATAGATGGGAGAACGCCCCTCCTTGAAATT GAGAACGCTCCCCCTGCTCAACGTTTATTCGTAGCAACTGAGAACCTTTG CACTCAAACAGACTGGCGTTGAAAATATCTGGTCGATAACTCTCATGATT AAGTGTTATTATTATTTTCACCTGTCTCCTACTGATGGAGTTACGAGAGG GGAGGACTAGGGAAGTTTTTCCTCCGAGGAGGCGTTCTCGTAAACTTTTG GGTTGATTTCTTGATGTCGTCGCGACGCTTGTTGACCTCCCCCCCGTTGA TGTCGATGACAAAGGGCCTCAGTTATGAAGAAGGCATGTAAAGCTTAAAA CCTGAGGACGCCCCCCCCCCCCCCCTCCCTCCCCTAGGTGGCGATGACAT GGCCCGAAGTGTGGCACGAGGGGCTGGACGAGGCGTCGCGGATGTACTTC GGCGATGGAAACGAGGAAGGCATGCTCGAAAAGCTGCAGGTATCCCCATT ATTTGACACCATACCAAGTGCTCGGTATGATTTACCTTGAAGACGTACGC GTACCGTAGGGGTGACATATCTTAAGGCTGCGCCGCCAACAGGTAATCCC CGCAAAAGCGGTGTAATTAATCAACCAATAACGTGGCGGAAAAAAATGCG CTGTTTTGACGGGACAGTACTCAGCCCTTTACTACTGAGTGCGTTGTAAG CGCTATTCCCGACGAGGTCTGCGTTTGTCTGTCTAAGTTGTAGACACATG CCTGCGTGTATAAGCCGACATATGGACAATCGGCCTTTATAATGTGGAAG CAGACAATTTAGCTCTTGGGCCCTCACTCTCCCAAAATTTTGCGTTCCCG TTGCTCAAAACGCCTGATTCTCTAAACTGCACCTTTCACGGTGCTAAGAA GGCGTGGATGTTCGGAGGGTTTTAATTAGTTCATATGTTTTTTTTAAATA CAAACACCCCATGGGCGATGATGGTGCTGATTTTTGCAGTGGCCCGTGAT TTTTTTTTTTTTTGTAACCCCATGAGAACTGGCCTATCGATCAAAATATT CCGTAGCTTCTGATAATGTTATCATGTGATAATGTTCAGGAACCGAGTTA CCGCTCGGCCATTTTGGCTAGTTTAGGCACCTGACGTCAAACCTGCGTAC AGCCCCCCCCCCCCCCTTCAACCTGCACGTCTAAGCCCTGATTGGTCTGC TTTTTGCGGACCACGAAAACGGACTGTTGTTATTAATGTGCACTTAAAAA AAATTAAAAAAAAATTAGTGGTGCAACCTTAAGGAACCAACCAAACCAAA CGCGCTTAGTTTGATTCACAGACAGGTTTCCCCCTATATGCATGTGTGTT TTTTTCTAGAGTGGGAAGGGTCGGGGGGTTACCAACCCCGGGGAGACTAA TTACCTACTATTAATAGGGTGTGTTTGGTACCGTACCGGTACGCCCGGTA CCGGTATAGATGTCGTACCGAACGTACCGAAGTGTCCGGTACCGGTTTGA ATGTTGTACCGATATTACCGAAGTGTCCGGTACCGATTTGAATGTTGTAC CGATCTTACCGAAGTGTCCAGTACCGCTATGGATATATACCGAACTTACC GAAGTGTCAATATGGTACCGAATTTACTAATGTGTCCGGTACCGGTATGG ATGTTGTACCGAACTTACCGAAGAATTGTTCGGTACCGGTACGGATGTCG TACCAATACCGATACCGGTACCCCCCCCCCCTATTTTTGAAAGTGGATAC CGGTATCCATATCGTATCGAAGTGTCCGATACCGGTAATACTGGCGGTAT GCCTCGGTACGTAACATACCGAATATACGCTTGGAAGTACTATATGGTGC TACCGTTTTGATTGATTGAATTCTCACATAAGCGGGTGTCAAAATCCAGC CCGTGGTCACAAAGTAGAAAAAACACCATCCGGAAGGAATAAACGTTCAA CGTGCTCTCCAATACAAAAGGAAATGGCAATAATAATGGTGCATAATACT AATGCTAATACTCGGAAAAAGCGACACTACTATCCAAAGAAAAAGAAAGA AACACAAAAAAGAGAACACACATAGTTGTTAACGAACTGCGTGTGGCGGT CGGGACGCGGGCCTATCGAAGAACGGTTGGACGAAGAGCTGCAGATTCAA TGAAAGCAACAACAACAAAAAGACGAAAACGAAAGAAAACAGAGGAAAAA CGTGACGCCAGAGAAAGGCAATAAGGCATCGGCAGACAAAAACGCCTAAG AGGGTACAAGGTCGCGCCACTTGTGGCTAATCAACTATGGCAAGCAAACC AGCACGAGCACGCTTGTATTGGGCTATCCTCTTCTTGGTCCTCCCCATCG CGTTCGGGCATGCTAGTGCATGCCGTAGTCCAGCCCTGGCTTTCTCTGCA GCGATTAATTTCGTCATGAAACGTTCCGCCCGTTGTTCCGCCGTCTTGCG CCATTGTACTTCCGCAGAGCTGCCGCGCCTGCCTTATCATAACAACGGTA ATGAAAAAAAAAATGAAAAAACCCATCAAAACTCGCCATCGCTACTGTAG CATTGCCTTTTTTTTCTTCTTTTTTTTTCAATGCACGGTATGCTATATAC GGCATTCAACCATACGCAGTGGAAAGTTGTAGACTCATTTTGTTCGGGGT GGGGGGAGGTGGGGGGGGGGGGGCAAACGCTTGCTTCTTTAGAGGTAAAA GAGTTCTGCACGAGAGGTCGATGGCGTTCGAGGCCAGCGGTGCTCTTCTT ACGTGAGGAGTATCGAGAGAATGGCTTGTGTGAGACAGTCGTTTGTGTGT GTGTGCGTGTGCATGTGTGTATTTATTAAGTTGCACATAATCACGAAATC CGTCCCTAACAACCTATTGGTCCTCCCCATCGGGGGATCAACGATAATAG TTGTTTCGAAAACCTCTCATCAGAGACGACAAAGGGGGCATACTTTCTTT CTACTCTCTTTCTCCAGTTCTTGTATAAGTCCTCAGCGTCTTGCGTTTCG TATGTTTATGTGTGTGTGTGTGTGTGTATGTATTTATTAAATTGCACATA ACCGCGCAATCCGGCCCTGTCGTCCTAGTCATTCTATGCCACTCGTATTG ATCCTCCTAGGGGGGGATCAATGATACTTATTCCGAAAAGTGTATATGTG TGTGGTAATTGTTTTTTTGTGTATCTTTCCCCCTTTCCCACCGTTTTTCT CCGTGTTTTTTCTCCTTCCCCCCCCCCCTCCGCGCCCTCTTTTTTGTACC TGATAGTATCTAACAGTCCCTCCCTACTCTTTTTACCTTTAAAACTATTA AATATTTCATATCAAATAGTATACGTAGTCCCCTTGCGAATGAGAGTAAG CAGTGTGAGCAACGTCCTTGACGTGCTCACTATTATACTGTGTATTGTAT ACCAGTATCGATTTTGTTATCGGCGAATGAATGTCGAGTCCATCACCCCT CTCCCCTCTTTGCATCATAAGTTTTCTCCTCGGATAGCTTTTATGATATA ATTTTGACAGTCCCGCTATTATTGGGTATTAGGTGACGTCAGCGGTGGAG CATAAATGGAAAAAAACAAACAAACAAACTTTTGTTCAATTCTTCACACG AGACAAAAATGTAGAGAGATCGTAAAAAAAAAGGTTACATTTTTTTTTTC ATTCTTCGGCCCTAGAGCTATATCCTAATCCCCTCTCCATAACAATTTTG ACCCACCTCACCCACCCCCACCCCCCCCCCTATCCCCTCTCTTCCAAACG CCCTCAAACCCCAACTCGCAGATGTTGCACCATCTCTTGCCGTGGGGGGC GTCTTCATCAGCGACCGCCGGTGCCTGGCCGTTTCACGCGTCCCCTGAGG CCAACGCACTGGCGCTGGACGGGGCCGCGGTAGACACTGTTCGAGGGGTG GCGTTCCTTCATCTCCATGGGCGAGATCTGGCGGAGGCATGGGAGTGGGT GCAGCGGTTCATGCGATCGAAGTGCGAGGTCGACCTCTTGCAGGTGTGGA TGTGTGCGTGTGTCTGAGTAAGAGTGCTTATATATATTTATATATATATA TATATATATATAACCTTGAACTCATTCCAACCCTCCGAACATCCACGCCT TCTTGGCACCGTAAGAGGTGCAGTCCAGGGGACCAACTATCGTCAGGTTA GAATGTGTACATTATTACACTACCTTTGAGCACAAAATTTTCAGAAATGA TAAAGCGTAGTTAAGTACATGATGATAAATCGTAGTAGGTGCATCATCAT TGATACGTGAGCTCAGATACGGAAGTTTTTCTCAGATAACTGGTCGGTTT AAGAGATCGATAAATCTTCCAGAAGAAATATGATGGTTGATCGGTAAGTT TTGATGACGTACCGCAAAAATGGTTTCGACAAATGTGGGGGAGGGGCGTT AAATGCGTGTTCGATGTACCCTGGTGATTGATGTAATGTTGTTTATGATT GGTTAACAGGTAACCAACCGTATAGTATTTTTTTCTTTCAATTTTAGTCA TTGGCTGTCTTTCTTTCTGATAATACACCCAAAAAACTATGTATGCATTT CAAGGGGGTTGGAGTTGTTTTTAATCTCCTTTGTGAAGTTTCCTCTGATT TCCCCCGTTGTCGTCAGTTGCTTGATCAGTTTTTTTTTTTTTTTTCCACT CTTGAGGAAAATTCTTGAGGAAAATTCTTGAGAAAATCTCGCTTGAAGAC TCGCGAGCTGAAAAGACGTGCCCGGGGATTTTTTTCCTTCCCCTTCCTCC TTCTCCCCCTCCCCCCAGGCTTGGGATATCTACTACCACGTATTCCAGAA GATTACGCGACAATTGAAGACCCTGAGATGCATCGAACTGAGGCACGTCG CGCCCGCCCTACCCCACGCAAACGGTCTGCAGCTCGCCGTGCCTGGGACG TACCGGTGAGGCTCAACCGTATCGCGTCGTATCGTATCGTATCGTATCGT ATCATATCATATCATTCGGTATCACATCGTACGTATCGCTCTCCATCTTG TGATATCGTATCGTATCATTCGGTATCATATCGTACGTATCGCGTGTGTC TCCATCTTATCGTATCATATCATATCGTATTGAAAATTAAAGGCCTATGT GTACCAGAAATATTACTGGTGCTATGATGTAATTGATGGATTGATTGATT GATTTATAACCGTCATACTGCTCGTACTTCTGTTTGTTACAGCGGTAGCA CTCATGTTATACCGTGTGTGTGTGTGTATTTATTAAAGTGTGTGTGTGTG CTGAACGCGATGCTTGATGCAAAGTAAGCGTTTCTTTCCTCTGAACCCGT AAGCTTGATTAGCCTAATATTATCATCCTACCCTAAGTGTCAGTTAGGGA TCGCAATATGTTATAATTTTCATCGCACCGACGTGTCAGTCACGGGTCGG ATCGTTTTATGTTGACATTGCTCTAGCTATGGTATTTTATTAATTCATCC TACCTAAGTGTTTCTTAGAAATGGAATATTGTCAAAATAGTGCTGTACTG TATACTGTATACCAGTATATTTTTGAATTCATTATTAGTTATGATTTTTT ACGAGGAGTGTTTTTTTCCAGAACAGGCTTCACTCCTGAACAGCGTGTTC CGCCTCTCGCGCCTCGTTTTGCTTTTCAATATACTATAACATTACTAGAT TACTAATAATATTACTATAGTTATTAATATGTCTAGAACACTACCGGTAT TACTAATAGTATTTTACTAGATTACTATTAATATTACTATAAATATTAAT ATGACTAGATCACTACCTGTATTACTATTAATATTTTACTAGATTACTAC TAAAATATGACTAGATTACGGTATCAACTAATATTATTACACTATTAATG CTACTACCGTGTTACTATTTCGATATTGCCATGTTACTAAGTATATTACG ATTACTAGAGACTATTGCCATTGCGGTGTCACTAAAACTAAATTACCTCG AACTTTATTTATCATTATAATGCTGCTACCGTTGTATCATTATTACTGCA ATAATATAAGCATTACCCTGTTAATATCATGCTATTACTGTGTTCAAATA AGATCAGTAATATGTTAGTAATATCAGTATTGCTGTACCAATATTACTGT GCTAAGATCAGTAATATGTTAGTAATATCAGTATTGATGTACTAATATTA CTGCCAATGAGTTTGTTGCATTACATGTTAAATGCGCTGTGTATATATTG GTAGTAAAATTAAGCATCGTATCGTAACAGCTGTTTAGGTCTAATTTAAT TTATCCAGGCGCTTTGTGGTTATGATCTTTGTCATTTTGTTTTTGTTTTT CTTTCTAGTTTTTACGTCGATATTCCCTATATGTACAATGTATCATGTAT GCGGTTGAGGTTCCTAACACTACCCCTCGTGGGCTGTTGAATCATCTGTT TCATCCTCTGTAATGATGCCACTGGCCGATAGTGCGCACGAGGAGGTGGT TCGCATCCAGTCCTTCGCCCCGACGGTGGAAGTCATCACGTGGTCCAAGC ATCGCCCCAGGCGCATGACTATTCACGGAGGTACATCGTTTACACTTATA GACTTAAACTAATACTAATACTAATACTAATATACTCTACCGATAGTGGG TGTGGGAAAAGATACGCACACAATAATTGGTCCGTGGGGTTACCTGAATA GGCTACACCCGTTACTCAAGCTACCTTGAAGACTGCTGGCTCAGAGTCGG CGGACTCTCGGTCGTGAACGTCACCGGTATGCATTTGCGTGATCTGATGA AATCGGGATTGACCCGATGGCGGTTTAACGGCAGCGATGAACACCGTCGC GGAAATCGAGAGGATCCCTGAAATACGCACCAGATCCCCCCTGGGTTGGA AGAATGAACGGGCTGACGCAGGACGGGATGGCCAAACAGGTCTCGCGAGA CCAAATTCTCAGTCGCGAGCAGGGGCAAGGAACAAAAAAAAAAAAAAAAA TCCCTGTTTCAGCTGATCAAGGGCAGGAGGCAACCAAATCCGGTTGATCC TTACCCTGCTACTATATGTGATGACTACACTATAAGACTAATACTATAAT ATTAACACTAATACACTAATACACTAACTGATACTAGAAGAGAGGAAGCG AGGAGACGGGTTAGGTGATGGTATTCGGTTCATGTTGCCGGCGCTCGAAA GATTGTTGCGAGCGTCGTTTGGGAGGTGGGTTGGGGGGGGGGGGGCTTTT ATGTTCTAATACGAATTATCGCGCCTTTCTGGATAATATATATTGGGACA GGTCAGAACACCATAGACATGTATAGACATGTTGGTGTCAAACCGGTAGT GTGTTTAGTTCAAAGTATTTAGAGATTTACGAGAGTGTTTATGGACATGC TGCGTGATAGACGTCGCGTACGCACCCTTGTAATACACACGCACATACAC ACGTGATTGAATTCCCCATTGAAAGGATCAATGCGAGAGTAGCCTAGAAG AGCTAGCATGACAGAGCCGGATTGCGCGGTTATGTGCAATTTAATAAATA CACACAAACATACACACACACACACACACACACACACACCAGTCGCCCCC CTCGTTCTAAAAACGCCTCCCCGCAGTCAACGGGGTCCCGTACATATACT TGCTCAAAGGCAAGGAGGACTTGAGGCAGGACGAGCGGGTAATGCAGCTG TTCGGGCTGATCAACGCTCTTCTCCAGACCGAACGGCCAACGGCGAGGGT GAACCTCAGCATCCGGCGCTACGCGATCATGCCGCTGTCGAACAACTCGG GGCTAATCGGCTGGGTGCCGAACTGCGACACGATGTACAAGCTTATCAAG CAGTTTCGCGAGAGCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1941:420..12137-

>mRNA_H-elongata_contig1941.5392.1 ID=mRNA_H-elongata_contig1941.5392.1|Name=mRNA_H-elongata_contig1941.5392.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig1941:420..12137- (Himanthalia elongata Himel1 dioecious)
GACACTCTACGATTGTTGACCCTCTGGTTCGCCCACGGAGGTTACGAATC
GGACACTCTACGATTGTTGACCCTCTGGTTCGCCCACGGAGGTTACGAAT
CGGTGAATCGCGTGATGGCCGTCGGGCTCGCGGCGTGCGGTGTTGACACG
TGGCTAGGGGTAGTACCGCAGCTGATCGCGAGGGTCCACACATCGTCTCC
GAGAGTCACCCGCCTTGTCAGGGAGCTGCTCATGCGGATCGGTCGCAAGC
ACCCGCAGGTGAATCGCGTGATGGCCGTCGGGCTCGCGGCGTGCGGTGTT
GACACGTGGCTAGGGGTAGTACCGCAGCTGATCGCGAGGGTCCACACATC
GTCTCCGAGAGTCACCCGCCTTGTCAGGGAGCTGCTCATGCGGATCGGTC
GCAAGCACCCGCAGGCTTTGATTTATCCGATCACCGTGGCGAGCAAAACA
TCTTCCCGGCCAAGACAAGAGGCTTTGATTTATCCGATCACCGTGGCGAG
CAAAACATCTTCCCGGCCAAGACAAGAGGCGGCAGGTGCGGTGATGGCGG
ACATGCGCAAACACTATCCGGTGCTGGTAGAAGAAGCATCGCTTGTTTCG
CGGGAGCTAATCAAGGCGGCAGGTGCGGTGATGGCGGACATGCGCAAACA
CTATCCGGTGCTGGTAGAAGAAGCATCGCTTGTTTCGCGGGAGCTAATCA
AGGTGGCGATGACATGGCCCGAAGTGTGGCACGAGGGGCTGGACGAGGCG
TCGCGGATGTACTTCGGCGATGGAAACGAGGAAGGCATGCTCGAAAAGCT
GCAGGTGGCGATGACATGGCCCGAAGTGTGGCACGAGGGGCTGGACGAGG
CGTCGCGGATGTACTTCGGCGATGGAAACGAGGAAGGCATGCTCGAAAAG
CTGCAGATGTTGCACCATCTCTTGCCGTGGGGGGCGTCTTCATCAGCGAC
CGCCGGTGCCTGGCCGTTTCACGCGTCCCCTGAGGCCAACGCACTGGCGC
TGGACGGGGCCGCGGTAGACACTGTTCGAGGGGTGGCGTTCCTTCATCTC
CATGGGCGAGATCTGGCGGAGGCATGGGAGTGGGTGCAGCGGTTCATGCG
ATCGAAGTGCGAGGTCGACCTCTTGCAGATGTTGCACCATCTCTTGCCGT
GGGGGGCGTCTTCATCAGCGACCGCCGGTGCCTGGCCGTTTCACGCGTCC
CCTGAGGCCAACGCACTGGCGCTGGACGGGGCCGCGGTAGACACTGTTCG
AGGGGTGGCGTTCCTTCATCTCCATGGGCGAGATCTGGCGGAGGCATGGG
AGTGGGTGCAGCGGTTCATGCGATCGAAGTGCGAGGTCGACCTCTTGCAG
GCTTGGGATATCTACTACCACGTATTCCAGAAGATTACGCGACAATTGAA
GACCCTGAGATGCATCGAACTGAGGCACGTCGCGCCCGCCCTACCCCACG
CAAACGGTCTGCAGCTCGCCGTGCCTGGGACGTACCGGCTTGGGATATCT
ACTACCACGTATTCCAGAAGATTACGCGACAATTGAAGACCCTGAGATGC
ATCGAACTGAGGCACGTCGCGCCCGCCCTACCCCACGCAAACGGTCTGCA
GCTCGCCGTGCCTGGGACGTACCGTGCGCACGAGGAGGTGGTTCGCATCC
AGTCCTTCGCCCCGACGGTGGAAGTCATCACGTGGTCCAAGCATCGCCCC
AGGCGCATGACTATTCACGGAGTGCGCACGAGGAGGTGGTTCGCATCCAG
TCCTTCGCCCCGACGGTGGAAGTCATCACGTGGTCCAAGCATCGCCCCAG
GCGCATGACTATTCACGGAGTCAACGGGGTCCCGTACATATACTTGCTCA
AAGGCAAGGAGGACTTGAGGCAGGACGAGCGGGTAATGCAGCTGTTCGGG
CTGATCAACGCTCTTCTCCAGACCGAACGGCCAACGGCGAGGGTGAACCT
CAGCATCCGGCGCTACGCGATCATGCCGCTGTCGAACAACTCGGGGCTAA
TCGGCTGGGTGCCGAACTGCGACACGATGTACAAGCTTATCAAGCAGTTT
CGCGAGAGCAAGTCAACGGGGTCCCGTACATATACTTGCTCAAAGGCAAG
GAGGACTTGAGGCAGGACGAGCGGGTAATGCAGCTGTTCGGGCTGATCAA
CGCTCTTCTCCAGACCGAACGGCCAACGGCGAGGGTGAACCTCAGCATCC
GGCGCTACGCGATCATGCCGCTGTCGAACAACTCGGGGCTAATCGGCTGG
GTGCCGAACTGCGACACGATGTACAAGCTTATCAAGCAGTTTCGCGAGAG
CAAG
back to top