mRNA_H-elongata_contig193959.5388.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI) HSP 1 Score: 261 bits (667), Expect = 8.080e-78 Identity = 127/210 (60.48%), Postives = 152/210 (72.38%), Query Frame = 1
Query: 1 RVSVYVYDN-QALDFSDLIDCYRETH-GKSPWQDERVDTAQDMGEIWLHKAILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCG-GRLVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
+VSV+VYD LD S L+ CYR+ G SPWQDER D AQDMGEIWLH+A+L HPWRV PEEA +FYVP+YPVLS KL +C G TH+E + +V YL SVYF+RFGG+DH +VCAWW C++ P RMLLRR V+GINE + W WGCG ++VTIPYTASS++TT E +GG E RDIPF FVGT+R R ERQNL V
Sbjct: 156 KVSVFVYDGVPELDHSWLVPCYRQVRDGVSPWQDERADMAQDMGEIWLHRAMLAHPWRVANPEEADLFYVPMYPVLSTKL---GNNRCGGKTHDELINTSVEYLALSSVYFRRFGGADHTLVCAWWNCKSALGPKPRMLLRRTVVGINEKMLEWTRWGCGLDKMVTIPYTASSVLTTSEMIGGRAAEDRDIPFFFVGTARGRPERQNLDV 362
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5KWD0_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD0_9PHAE) HSP 1 Score: 207 bits (526), Expect = 6.270e-63 Identity = 94/159 (59.12%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 148 ILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCG-GRLVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
+L HPWRVL+PEEA +FYVPIYPVLS+KL ++C GLTHNE M +V YL + S +F RFGG+DH+++CAWWKC P RMLLRRAV+GINE + W WGCG ++VT+PYTA+S++TT + +GG E RDIPF FVGT+R R ER+NL V
Sbjct: 1 MLSHPWRVLDPEEADLFYVPIYPVLSFKLA---TSRCGGLTHNELMDASVEYLSSSSPFFNRFGGADHILMCAWWKCGEALGPKHRMLLRRAVVGINERLLRWTRWGCGRSKMVTVPYTANSVLTTSDMIGGRTAEDRDIPFFFVGTARHRPERKNLDV 156
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5LR87_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR87_9PHAE) HSP 1 Score: 197 bits (502), Expect = 2.110e-60 Identity = 93/165 (56.36%), Postives = 118/165 (71.52%), Query Frame = 1
Query: 148 ILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVT------QCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCGGR-LVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
+L HPWRVL+PEEA +FYVPIY LS KL E + +C GLTH+E M +V YL + S++F RFGG+DH+++CAWW CRN P RMLLRR V+GINE + W WGCG R +VT+PYTASS++ T + +GG E+RDIPF FVGT+R R ER+NL V
Sbjct: 1 MLFHPWRVLDPEEADLFYVPIYSALSSKLTEHSTIHLELRRRCGGLTHDELMDASVEYLSSSSLFFNRFGGADHILMCAWWGCRNGLGPKHRMLLRRTVVGINERVFKWTRWGCGPRKMVTVPYTASSVLATSDMIGGRTAEARDIPFFFVGTARGRPERENLDV 165
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE) HSP 1 Score: 162 bits (411), Expect = 3.060e-43 Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 1
Query: 244 NVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCGGR-LVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
N QC GLTH+E M +V YL + S++F RFGG+DHV++CAWW CRN P RMLLRR V+GINE + W WGCG R +VT+PYTASS++ T + +GG E+RDIPF FVGT+R R ER+NL V
Sbjct: 2 NEPQCGGLTHDELMDASVDYLSSSSLFFNRFGGADHVLMCAWWGCRNGLGPKHRMLLRRTVVGINERVFLWTRWGCGPRKMVTVPYTASSVLATSDMIGGRTAEARDIPFFFVGTARGRPERENLDV 128
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5KVI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI3_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.410e-11 Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 1 RVSVYVYDN-QALDFSDLIDCYRETHGKSPWQDERVDTAQDMGEIWLHKA 147
RV+V+VY+ LD +L+ CYR+ HG +PWQDER D AQDMGEIW+H++
Sbjct: 155 RVAVFVYEGVPELDHMELVQCYRDVHGVAPWQDERFDMAQDMGEIWMHRS 204
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A8J2EUU5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2EUU5_9DINO) HSP 1 Score: 65.1 bits (157), Expect = 7.810e-9 Identity = 61/226 (26.99%), Postives = 99/226 (43.81%), Query Frame = 1
Query: 1 RVSVYVYDNQALDFSDLIDCYRETHGKSPWQDERVDTAQDMGEIWLHKAILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVT---QCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTP----------W----QRMLLRRAVLGINE-------AIKAWANWGCGGRLVTIPY--TASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQ 600
RV +VYDN L ++ W V T +D ++ L +A+ +HPWR PE+A +F VP + S +L E T + RG H+ R + A+ +L T S +F+R G DH+++ W + T W + +L R V+ ++ KAW W L ++P+ T S++T E P+ + +P F + RQ
Sbjct: 203 RVPFFVYDNHELTMNN-------------WTHVCV-TERDCADVSLLQALRKHPWRTASPEDAEIFVVPTQFLQSRQLDEKRKTGGGKNRG--HDRRTRTALNWLFTQSPWFRRRQGRDHLLLANPWYFSRLTTDERDKCIPKDAWPALSETILTREEVVHMSSWENSFKRGPKAW--WRHPQNLFSVPWESTKRSVVTPIEMY----PDVQVVPAEFTPAWKNRQ 406
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5L8I0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I0_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 2.080e-7 Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1 RVSVYVYDN-QALDFSDLIDCYRETH-GKSPWQDERVDTAQDMGEIWLHKAI 150
+V+++VY+ LD ++L+ CYR H G +PWQDER D A++MGEIW+H+ +
Sbjct: 145 KVAIFVYEGVPELDHTELVQCYRSGHRGVAPWQDERNDMAENMGEIWMHRYV 196
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A7S3ZW87_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW87_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.780e-7 Identity = 45/153 (29.41%), Postives = 68/153 (44.44%), Query Frame = 1
Query: 85 PWQDERVDTAQDMGEIWLHKAILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWK---CRNVFTPWQRMLLRRAVLGINEAIKAWANWGCGG--------RLVTIPYTASS 510
P Q A+++ E+W+H+A+L R +PE AS+F+VP Y LS G H+ER+ + L + S +FQR G+DHV + R + P L ++ G+ E AW GG R+V PY +
Sbjct: 71 PQQRRHYKIAEELVEVWVHRALLNDKRRTTDPEAASLFFVPAYLSLS--------KNSDGQGHDERLSALIEELRS-SKWFQRHRGADHVFGYSSINPGVARQLLFPKLHAGLEQSYFGVFEMNPAWV----GGDRKEETLRRMVPAPYVVDA 210
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A7S3V9G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9G1_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.810e-6 Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 115 QDMGEIWLHKAILEHPWRVLEPEEASVFYVP--IYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEA 444
Q G++ ++ L+HP RVL PE+A +F VP + P + + E + + KA +L S +FQR G+DH+ A WK N T + +L R V+ +EA
Sbjct: 130 QQHGDVHFIRSALQHPMRVLNPEDAKLFVVPTLLTPTIMRVIYEPE--SALSAKARKHLLKA-NEVLRASPWFQRSDGADHIAPIAMWKTDNTITEFFELLTRCNVVQFHEA 238
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: UPI001CC33B42 (probable arabinosyltransferase ARAD1 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC33B42) HSP 1 Score: 55.5 bits (132), Expect = 1.520e-5 Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 1
Query: 4 VSVYVYDNQALDFSDLIDCYRETHG--KSPWQDE---RVDTAQDMGEIWLHKAILEHPW------RVLEPEEASVFYVPIYPVLSY---KLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVC 363
V VY+YD +I+ Y KSP +D+ + Q E WL K +L RVL+PEEA +FYVP + LS + V G+ +E M++++ L VY++R G DHV +C
Sbjct: 102 VKVYLYDLPRKFTYGVIESYLMARDSLKSPVEDDSTLKYPGHQHSAEWWLFKDLLREDRYGSPVIRVLDPEEADLFYVPFFSSLSLVVNPIRPGGVVGNAGVYSDEEMQESLMDWLEGQVYWKRSLGLDHVFIC 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig193959.5388.1 >prot_H-elongata_contig193959.5388.1 ID=prot_H-elongata_contig193959.5388.1|Name=mRNA_H-elongata_contig193959.5388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp RVSVYVYDNQALDFSDLIDCYRETHGKSPWQDERVDTAQDMGEIWLHKAIback to top mRNA from alignment at H-elongata_contig193959:25..645- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig193959.5388.1 ID=mRNA_H-elongata_contig193959.5388.1|Name=mRNA_H-elongata_contig193959.5388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig193959:25..645- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig193959:25..645- >mRNA_H-elongata_contig193959.5388.1 ID=mRNA_H-elongata_contig193959.5388.1|Name=mRNA_H-elongata_contig193959.5388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig193959:25..645- (Himanthalia elongata Himel1 dioecious)back to top |