mRNA_H-elongata_contig193894.5386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193894.5386.1
Unique NamemRNA_H-elongata_contig193894.5386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193894.5386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193894contigH-elongata_contig193894:338..1059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.531183-CDS-H-elongata_contig193894:337..4921622930104.531183-CDS-H-elongata_contig193894:337..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193894 338..492 +
1691679281.7744823-CDS-H-elongata_contig193894:337..4921691679281.7744823-CDS-H-elongata_contig193894:337..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193894 338..492 +
1622930104.5451825-CDS-H-elongata_contig193894:938..10591622930104.5451825-CDS-H-elongata_contig193894:938..1059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193894 939..1059 +
1691679281.787399-CDS-H-elongata_contig193894:938..10591691679281.787399-CDS-H-elongata_contig193894:938..1059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193894 939..1059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193894.5386.1prot_H-elongata_contig193894.5386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193894 338..1059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193894.5386.1

>prot_H-elongata_contig193894.5386.1 ID=prot_H-elongata_contig193894.5386.1|Name=mRNA_H-elongata_contig193894.5386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
KVTSLYGVLRTPCDLCDRQRYLKQPHGRCIKCNFTPSIAKYFRKCINCSG
IGYSQEPQHLCPRCNSTGYCRGNSCMVCGGKGVIHHEVCSVA
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mRNA from alignment at H-elongata_contig193894:338..1059+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193894.5386.1 ID=mRNA_H-elongata_contig193894.5386.1|Name=mRNA_H-elongata_contig193894.5386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig193894:338..1059+ (Himanthalia elongata Himel1 dioecious)
AAGGTGACGTCGCTGTACGGAGTGTTGAGGACTCCGTGCGACCTGTGCGA
TCGACAGCGCTACCTGAAGCAGCCCCACGGCCGTTGCATCAAGTGCAACT
TCACGCCCTCGATCGCCAAGTACTTCCGGAAGTGCATCAACTGCAGCGGC
ATCGGGTAAGAGCGAAAAGCTCGGGTTTCTACACCGCGCTTGATCCGCCT
GCACTATTAGATGTAGCCCTAATACCTTTCCCTATCCCCCCCCCCCAACC
GCCATTTACCTCGTACTGTGCTTAGCATACTTTTGGATACCTGCCATCCT
CACAATGCGTTCTACAAGAGTCAAAAGCATCTCCTCGTAACTTTAGTCAT
CTCAAAACTTTCCTGGAGGCATTGTCCGGAAAAAGATTTCCTAGCGAGAA
ATTTCTCGACACGTGTTCAGATCGTGGTGGGACGCGGCTGACACGGCGCC
CAACGGCCTGCTCCGGTCACCTCCCACCTTGCAGACCTCTTAGTAAATAC
TGTAGGGCAGACGCTGACCTCGCAGGGTATTTCATCTTCACGGTGAAACC
AAACCGAAACCGAAACGGAACCGAAACCAAACGAAACGGAACATACTACA
GGTACTCTCAGGAGCCGCAACACCTGTGCCCGCGGTGCAACTCCACCGGG
TACTGCAGGGGCAACAGCTGCATGGTCTGCGGGGGGAAAGGGGTCATACA
CCACGAGGTGTGTTCCGTTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig193894:338..1059+

>mRNA_H-elongata_contig193894.5386.1 ID=mRNA_H-elongata_contig193894.5386.1|Name=mRNA_H-elongata_contig193894.5386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig193894:338..1059+ (Himanthalia elongata Himel1 dioecious)
AAGGTGACGTCGCTGTACGGAGTGTTGAGGACTCCGTGCGACCTGTGCGA
TCGACAGCGCTACCTGAAGCAGCCCCACGGCCGTTGCATCAAGTGCAACT
TCACGCCCTCGATCGCCAAGTACTTCCGGAAGTGCATCAACTGCAGCGGC
ATCGGAAGGTGACGTCGCTGTACGGAGTGTTGAGGACTCCGTGCGACCTG
TGCGATCGACAGCGCTACCTGAAGCAGCCCCACGGCCGTTGCATCAAGTG
CAACTTCACGCCCTCGATCGCCAAGTACTTCCGGAAGTGCATCAACTGCA
GCGGCATCGGGTACTCTCAGGAGCCGCAACACCTGTGCCCGCGGTGCAAC
TCCACCGGGTACTGCAGGGGCAACAGCTGCATGGTCTGCGGGGGGAAAGG
GGTCATACACCACGAGGTGTGTTCCGTTGCTGTACTCTCAGGAGCCGCAA
CACCTGTGCCCGCGGTGCAACTCCACCGGGTACTGCAGGGGCAACAGCTG
CATGGTCTGCGGGGGGAAAGGGGTCATACACCACGAGGTGTGTTCCGTTG
CT
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