mRNA_H-elongata_contig19389.5385.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19389.5385.1
Unique NamemRNA_H-elongata_contig19389.5385.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A6H5LQU7_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LQU7_9PHAE)

HSP 1 Score: 469 bits (1206), Expect = 6.060e-160
Identity = 219/312 (70.19%), Postives = 257/312 (82.37%), Query Frame = 3
Query:  102 MGVRSA----WSRVRGRGVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            MG+RSA    W R RG G    +S+ +LK+ IA+FYD SS IWE +WGEHMHHGYYV+G+ PK +E HRAAQRFM+ RSLEWAGV+EG +APKTG+D+GCG+GGSSR IS+RYGT MTGI+LSPVQ +RA+ +SE  GLGDKCKF VAD LNTPF  +SF+LVWSME GEHMP + K+V E++RICAPGGR+LVV WCHRDLEE ET LTPKE++LL +I K Y LP+WCS SDYVKYFE EGLVDIK ADWTDNIQ FWPAVIRSS++ +G  GLLKSGP TI+ A+AML MVRGYK  LVKFAL+T KKP
Sbjct:   84 MGLRSAAENTWKRARGGGKGKTRSDGELKEGIANFYDKSSGIWEEMWGEHMHHGYYVQGVKPKNMEHHRAAQRFMIGRSLEWAGVEEGGAAPKTGVDIGCGVGGSSRAISRRYGTNMTGISLSPVQVERAKNLSEAAGLGDKCKFQVADALNTPFDTDSFDLVWSMESGEHMPYKPKFVGELARICAPGGRVLVVTWCHRDLEEGETELTPKEEKLLAKINKAYYLPRWCSTSDYVKYFEDEGLVDIKRADWTDNIQNFWPAVIRSSVSFQGIVGLLKSGPVTIRGAVAMLLMVRGYKRGLVKFALITGKKP 395          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A6S9IJ58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IJ58_HETAK)

HSP 1 Score: 389 bits (999), Expect = 3.350e-129
Identity = 186/333 (55.86%), Postives = 241/333 (72.37%), Query Frame = 3
Query:   42 SDGLFPTRGVAPTAGFHSLHMGVRSA----WSRVRGRGVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSL-TPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            ++G    +  A T     L MGVRS     + +V G    S++++ +LK  IA FYD+SS +WE +WGEHMHHGYY +G+      DH+ AQ  M++RSL+WAGV +  +     +DVGCGIGGSSR I++RYG   TGITLSPVQ  RA A+SE +GLGD+C+F VAD LN PF   SF+L+WSME GEHMP++ K+V  ++R+CAPGG++LVV WCHRDLE  E  LTPKE+ LL RI K Y LP+WCS +DYV Y EA GL DIKTADWTD IQ FWPAV+RS+L +P+ F+G+L+SGP T++ A+AMLWM++GY   L+KF L+TA KP
Sbjct:   21 AEGFVSQKVQATTENKTLLKMGVRSTLAKPFKKVFG---SSERTDKELKDGIAGFYDASSGVWEDVWGEHMHHGYYPEGVKV----DHKEAQIDMINRSLDWAGVVKADNV----VDVGCGIGGSSRHIARRYGGRTTGITLSPVQAARATALSEAQGLGDRCRFQVADALNMPFEENSFDLIWSMESGEHMPEKEKFVQGLARVCAPGGKVLVVTWCHRDLEPGEAGLTPKEERLLNRINKAYYLPRWCSVADYVAYAEAAGLADIKTADWTDRIQAFWPAVVRSALGSPRNFWGMLRSGPKTVRGALAMLWMIQGYNRGLIKFGLITATKP 342          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A836C920_9STRA (Gamma-tocopherol methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C920_9STRA)

HSP 1 Score: 382 bits (982), Expect = 5.630e-127
Identity = 180/315 (57.14%), Postives = 234/315 (74.29%), Query Frame = 3
Query:   96 LHMGVRSAWS----RVRGRGVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQ-EGSSAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            + MG R+A S    +V+  G   ++S A+LK  IA+FYD SS +WE IWGEHMHHGYY +   P+++E+H+AAQ  M+ +SLEWAGV  + +S PKTG+DVGCGIGGSSR I++++GT M GITLSP Q  RA  ++ + GL DKC F VAD L  PF   SF+L+WSME GEHMP + ++V E++R+CAPGGR+L+V WCHRDLEE E +L PKEQ LL  I K Y LP+WCS +DYV Y +  GL D++  DWTD IQ FWPAVI+SSL+ +G  GL+++GP  I+ A+AML MVRG+K NLVKF L+TA+KP
Sbjct:    1 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEE--QPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP 313          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A0D2MKE8_9CHLO (Methyltransferase type 11 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MKE8_9CHLO)

HSP 1 Score: 343 bits (880), Expect = 1.470e-111
Identity = 166/291 (57.04%), Postives = 208/291 (71.48%), Query Frame = 3
Query:  168 DLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQ-----ELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            DLKK IA+FYD SS +WE +WGEHMHHGYY  G APK+ +    AQ  M+  +L WAGV    + PKT +DVGCGIGGSSR I+++YG    GITLSPVQ  RA AISE+ GLGDKC F VAD L+ PF   SF+LVWS+E GEHMP + ++V E++R+CAPGGR+++V WCHR L+  E  L  +E       LL+RI + Y LP WCS +DY + FEAEGLVD+KTADW++ +  FW  VIRS+LT KG  GL K+G TTIK A+ M  M +G++  LVKF L+TAKKP
Sbjct:   51 DLKKGIATFYDESSGLWEEVWGEHMHHGYYPAGGAPKSNQQ---AQIDMIEETLSWAGVD---TPPKTMVDVGCGIGGSSRHIARKYGCTAKGITLSPVQAARANAISEKAGLGDKCSFQVADALHQPFDDGSFDLVWSLESGEHMPNKPQFVRELARVCAPGGRVIIVTWCHRVLQPGEERLNAEELVGALLSLLDRICEAYYLPAWCSIADYQRLFEAEGLVDVKTADWSNEVAPFWTEVIRSALTTKGIAGLFKAGWTTIKGALVMPLMAQGFRMGLVKFVLITAKKP 335          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A2V0P4Y4_9CHLO (Gamma-tocopherol methyltransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P4Y4_9CHLO)

HSP 1 Score: 343 bits (879), Expect = 2.370e-111
Identity = 163/286 (56.99%), Postives = 204/286 (71.33%), Query Frame = 3
Query:  168 DLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            DLK+ IA FYD SS +WE +WGEHMHHGYY  G  PK+ +    AQ  M+  +L+WAG++EG   PKT +DVGCGIGGSSR I+++YG    GITLSPVQ  RA AISE+ GLGDKC F VAD L  PF   SF+LVWS+E GEHMP +  +V E++R+ APGGR+++V WCHR L   E  L P+EQ LL+RI + Y LP WCS +DY + FEAEGL  IKT DW++ +  FW  VIRS+LT KG  GL K+G TTIK A+ M  M +G++  LVKF L+TA+KP
Sbjct:   58 DLKQGIAQFYDESSGLWEEVWGEHMHHGYYPAGGPPKSNQQ---AQIDMIEETLKWAGMEEGR-PPKTMVDVGCGIGGSSRHIARKYGCTAKGITLSPVQAARANAISEKAGLGDKCSFQVADALQQPFPDGSFDLVWSLESGEHMPDKPAFVRELARVTAPGGRVIIVTWCHRVLAPGEAGLKPEEQSLLDRICEAYYLPAWCSIADYQRLFEAEGLTGIKTTDWSNEVAPFWGEVIRSALTTKGIAGLFKAGWTTIKGALVMPLMAQGFRMGLVKFVLITAQKP 339          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A2G3AFP9_CAPAN (Tocopherol O-methyltransferase, chloroplastic n=6 Tax=Solanoideae TaxID=424551 RepID=A0A2G3AFP9_CAPAN)

HSP 1 Score: 342 bits (877), Expect = 1.240e-110
Identity = 163/296 (55.07%), Postives = 216/296 (72.97%), Query Frame = 3
Query:  141 GVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGI-DVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            G+++Q+   +LKK IA  YD SS IWE IWG+HMHHGYY    + + + DHRAAQ  M+ ++L++A + E  +   T I DVGCGIGGSSR ++K+YG    GITLSPVQ +RAQA++  +GLGDK  F VAD LN PF    F+LVWSME GEHMP + K+V E++R+ APGG I++V WCHRDL  SE +LTP+E++LL +I K + LP WCS +DYVK  ++  L DIK ADW++N+  FWPAVI+S+LT KGF  +L+SG  TIKAA+AM  M+ GYK  L+KFA++T +KP
Sbjct:   77 GIQNQQ---ELKKGIADLYDESSGIWEDIWGDHMHHGYYEPNSSVE-LSDHRAAQIRMIEQALKFADLNEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQALAAAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPDKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKQLLNKICKAFYLPAWCSTADYVKLLQSNSLRDIKAADWSENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGLIKFAIITCRKP 368          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A3Q7HRN3_SOLLC (Methyltransf_11 domain-containing protein n=19 Tax=Solanum TaxID=4107 RepID=A0A3Q7HRN3_SOLLC)

HSP 1 Score: 343 bits (880), Expect = 2.090e-110
Identity = 165/299 (55.18%), Postives = 216/299 (72.24%), Query Frame = 3
Query:  141 GVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKT---IEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGI-DVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            G+++Q+   +LKK IA  YD SS IWE IWG+HMHHGYY     PK+   + DHRAAQ  M+ ++L +A + E  +   T I DVGCGIGGSSR ++K+YG    GITLSPVQ +RAQA+++ +GLGDK  F VAD LN PF    F+LVWSME GEHMP + K+V E++R+ APGG I++V WCHRDL  SE +LTP+E+ELL +I K + LP WCS +DYVK  ++  L DIK  DW++N+  FWPAVI+S+LT KGF  +L+SG  TIKAA+AM  M+ GYK  L+KFA++T +KP
Sbjct:  125 GIQNQQ---ELKKGIADLYDESSGIWEDIWGDHMHHGYYE----PKSSVELSDHRAAQIRMIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVKLLQSNSLQDIKAEDWSENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGLIKFAIITCRKP 416          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: UPI0018ADD742 (probable tocopherol O-methyltransferase, chloroplastic isoform X2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADD742)

HSP 1 Score: 339 bits (870), Expect = 4.250e-110
Identity = 161/295 (54.58%), Postives = 208/295 (70.51%), Query Frame = 3
Query:  144 VKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSA-PKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            V+  +   +LKK IA  YD SS +WEG+WGEHMHHG+Y  G+ P ++  HR AQ  M+  +L +AGV E SS  PK  +DVGCGIGGSSR ++K+YG    GITLSPVQ  RAQA++  +GL DK  F VAD L+ PF    F+LVWSME GEHMP ++K+V+E++R+ APG  I++V WCHRDL +SE +L P E  LL +I   Y LP+WCSPSDYVK  E+  L DIKTADW+DN+  FWPAVI+S+ T KGF  LL+SG  +IK A+ M  M+ GY   L+KF ++T +KP
Sbjct:   39 VQVVRDREELKKGIADLYDESSKMWEGLWGEHMHHGFYDPGL-PGSVAHHRRAQLRMIEETLSFAGVTEDSSKWPKRVVDVGCGIGGSSRYLAKKYGAQCQGITLSPVQAQRAQALAVAEGLADKVSFQVADALDQPFPDGHFDLVWSMESGEHMPDKNKFVSELTRVAAPGATIIIVTWCHRDLSQSEDSLKPDEITLLNKICNAYYLPEWCSPSDYVKIAESLSLKDIKTADWSDNVAPFWPAVIQSAFTWKGFISLLRSGWKSIKGALVMPLMIEGYNKKLIKFTIITCRKP 332          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A1S4BJT9_TOBAC (tocopherol O-methyltransferase, chloroplastic-like isoform X1 n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BJT9_TOBAC)

HSP 1 Score: 340 bits (873), Expect = 4.500e-110
Identity = 159/291 (54.64%), Postives = 213/291 (73.20%), Query Frame = 3
Query:  156 KSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEG-SSAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            +++ +LKK IA  YD SS IWE IWG+HMHHG+Y +  +  ++ DHRAAQ  M+  +L +A V +  +  P++ +DVGCGIGGSSR ++K+YG    GITLSPVQ +RAQA++  +GLGDK  F VAD LN PF    F+LVWSME GEHMP + K+V E++R+ APGG I++V WCHRDL  SE +L P+E+ELL +I K + LP WCS +DYVK  ++  L DIK ADW++N+  FWPAVI+S+LT KGF  +L+SG  TIKAA+AM  M+ GYK  L+KFA++T +KP
Sbjct:   76 QNQQELKKGIAELYDESSGIWEDIWGDHMHHGFY-EPQSSVSLSDHRAAQIRMIEEALRFASVSDDPAKKPRSIVDVGCGIGGSSRYLAKKYGATAQGITLSPVQAERAQALAAAQGLGDKASFQVADALNQPFPDGQFDLVWSMESGEHMPDKQKFVGELARVAAPGGTIILVTWCHRDLSPSEESLLPEEKELLNKICKSFYLPAWCSTADYVKLLQSNSLRDIKAADWSENVAPFWPAVIKSALTWKGFTSILRSGWKTIKAALAMPLMIEGYKKGLIKFAIITCRKP 365          
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Match: A0A7S4J028_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J028_9STRA)

HSP 1 Score: 338 bits (868), Expect = 1.830e-109
Identity = 169/325 (52.00%), Postives = 216/325 (66.46%), Query Frame = 3
Query:   69 VAPTAGFHS----LHMGVRSAWSRVRGRGVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHGYYVKGMAPKTIEDHRAAQRFMVSRSLEWAGV-QEGS-SAPKTGIDVGCGIGGSSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTPFARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEESETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTDNIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKFALVTAKKP 1025
            V   A F S    L MGV SA  RVR   +  +++  DLK  IA FYD SS +WE IWGEHMHHGYYV    P+   DH  AQ  M+  SL+WAGV  EG    P   +DVGCGIGGSSR I+++YG +  GITLSP Q  R   ++ ++GL D+C+F VAD L+ PF  E F+LVWS E GEHMP ++K+V E+ R+ APGGRI++V WCHRDLEE E +LT KE++LL +I + Y LP+WCS  DYVK  E  G V IK  DW+  I  FW AVI+SSL+ K   GL+KSG +TI+ A AM  M++G+   L+KF ++T +KP
Sbjct:   34 VENAAAFRSRSTRLQMGVGSAARRVRDSVLSKERNREDLKIGIAGFYDRSSKLWEDIWGEHMHHGYYV----PEDRTDHIQAQIDMIDESLKWAGVPNEGEPGTPSKVVDVGCGIGGSSRHIARKYGASTKGITLSPYQAQRGNELASEQGLADQCEFRVADALDMPFHDEEFDLVWSFESGEHMPDKTKFVDELCRVVAPGGRIILVTWCHRDLEEGEESLTKKEEKLLAKINRAYYLPRWCSVDDYVKLLEERGAVGIKRDDWSYTIAPFWKAVIKSSLSLKSVVGLMKSGFSTIRGAYAMFLMLKGFNMGLIKFGMITCQKP 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19389.5385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQU7_9PHAE6.060e-16070.19Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A6S9IJ58_HETAK3.350e-12955.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836C920_9STRA5.630e-12757.14Gamma-tocopherol methyltransferase n=1 Tax=Tribone... [more]
A0A0D2MKE8_9CHLO1.470e-11157.04Methyltransferase type 11 n=1 Tax=Monoraphidium ne... [more]
A0A2V0P4Y4_9CHLO2.370e-11156.99Gamma-tocopherol methyltransferase n=1 Tax=Raphido... [more]
A0A2G3AFP9_CAPAN1.240e-11055.07Tocopherol O-methyltransferase, chloroplastic n=6 ... [more]
A0A3Q7HRN3_SOLLC2.090e-11055.18Methyltransf_11 domain-containing protein n=19 Tax... [more]
UPI0018ADD7424.250e-11054.58probable tocopherol O-methyltransferase, chloropla... [more]
A0A1S4BJT9_TOBAC4.500e-11054.64tocopherol O-methyltransferase, chloroplastic-like... [more]
A0A7S4J028_9STRA1.830e-10952.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19389contigH-elongata_contig19389:2..6334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score465.3
Seed ortholog evalue2.2e-128
Seed eggNOG ortholog2880.D8LHY0
Preferred nameTMT
KEGG rclassRC00003,RC01662
KEGG koko:K05928
KEGG ReactionR07236,R07504,R10491,R10492
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0016740,GO:0016741,GO:0018130,GO:0032259,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050342,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.sterol 24-C-methyltransferase activity
EggNOG OGsCOG0500@1,KOG1269@2759
EC2.1.1.95
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGamma-tocopherol methyltransferase
Ec32 orthologEc-18_000910.1
Exons10
Model size1550
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19389.5385.1prot_H-elongata_contig19389.5385.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19389 524..6233 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.244726-UTR-H-elongata_contig19389:1..5231622930104.244726-UTR-H-elongata_contig19389:1..523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19389 2..523 -
1691679281.6533186-UTR-H-elongata_contig19389:1..5231691679281.6533186-UTR-H-elongata_contig19389:1..523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19389 2..523 -
1622930104.4861338-UTR-H-elongata_contig19389:6233..63341622930104.4861338-UTR-H-elongata_contig19389:6233..6334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19389 6234..6334 -
1691679281.7668998-UTR-H-elongata_contig19389:6233..63341691679281.7668998-UTR-H-elongata_contig19389:6233..6334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19389 6234..6334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.2558603-CDS-H-elongata_contig19389:523..5891622930104.2558603-CDS-H-elongata_contig19389:523..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 524..589 -
1691679281.6710193-CDS-H-elongata_contig19389:523..5891691679281.6710193-CDS-H-elongata_contig19389:523..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 524..589 -
1622930104.2656415-CDS-H-elongata_contig19389:954..10561622930104.2656415-CDS-H-elongata_contig19389:954..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 955..1056 -
1691679281.681547-CDS-H-elongata_contig19389:954..10561691679281.681547-CDS-H-elongata_contig19389:954..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 955..1056 -
1622930104.2794435-CDS-H-elongata_contig19389:1460..15751622930104.2794435-CDS-H-elongata_contig19389:1460..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 1461..1575 -
1691679281.6914628-CDS-H-elongata_contig19389:1460..15751691679281.6914628-CDS-H-elongata_contig19389:1460..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 1461..1575 -
1622930104.3871248-CDS-H-elongata_contig19389:2446..25721622930104.3871248-CDS-H-elongata_contig19389:2446..2572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 2447..2572 -
1691679281.704811-CDS-H-elongata_contig19389:2446..25721691679281.704811-CDS-H-elongata_contig19389:2446..2572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 2447..2572 -
1622930104.4005487-CDS-H-elongata_contig19389:3104..31961622930104.4005487-CDS-H-elongata_contig19389:3104..3196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 3105..3196 -
1691679281.7157958-CDS-H-elongata_contig19389:3104..31961691679281.7157958-CDS-H-elongata_contig19389:3104..3196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 3105..3196 -
1622930104.4149892-CDS-H-elongata_contig19389:3654..37141622930104.4149892-CDS-H-elongata_contig19389:3654..3714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 3655..3714 -
1691679281.7253366-CDS-H-elongata_contig19389:3654..37141691679281.7253366-CDS-H-elongata_contig19389:3654..3714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 3655..3714 -
1622930104.4282446-CDS-H-elongata_contig19389:4231..43141622930104.4282446-CDS-H-elongata_contig19389:4231..4314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 4232..4314 -
1691679281.7332063-CDS-H-elongata_contig19389:4231..43141691679281.7332063-CDS-H-elongata_contig19389:4231..4314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 4232..4314 -
1622930104.4407632-CDS-H-elongata_contig19389:4762..48511622930104.4407632-CDS-H-elongata_contig19389:4762..4851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 4763..4851 -
1691679281.741436-CDS-H-elongata_contig19389:4762..48511691679281.741436-CDS-H-elongata_contig19389:4762..4851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 4763..4851 -
1622930104.4607315-CDS-H-elongata_contig19389:5399..55341622930104.4607315-CDS-H-elongata_contig19389:5399..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 5400..5534 -
1691679281.751749-CDS-H-elongata_contig19389:5399..55341691679281.751749-CDS-H-elongata_contig19389:5399..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 5400..5534 -
1622930104.4743376-CDS-H-elongata_contig19389:6174..62331622930104.4743376-CDS-H-elongata_contig19389:6174..6233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 6175..6233 -
1691679281.75939-CDS-H-elongata_contig19389:6174..62331691679281.75939-CDS-H-elongata_contig19389:6174..6233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19389 6175..6233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19389.5385.1

>prot_H-elongata_contig19389.5385.1 ID=prot_H-elongata_contig19389.5385.1|Name=mRNA_H-elongata_contig19389.5385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
MGVRSAWSRVRGRGVKSQKSEADLKKDIASFYDSSSTIWEGIWGEHMHHG
YYVKGMAPKTIEDHRAAQRFMVSRSLEWAGVQEGSSAPKTGIDVGCGIGG
SSRQISKRYGTAMTGITLSPVQRDRAQAISEQKGLGDKCKFMVADGLNTP
FARESFNLVWSMECGEHMPQRSKWVAEMSRICAPGGRILVVAWCHRDLEE
SETALTPKEQELLERIGKVYCLPQWCSPSDYVKYFEAEGLVDIKTADWTD
NIQEFWPAVIRSSLTPKGFFGLLKSGPTTIKAAIAMLWMVRGYKTNLVKF
ALVTAKKP*
back to top

mRNA from alignment at H-elongata_contig19389:2..6334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19389.5385.1 ID=mRNA_H-elongata_contig19389.5385.1|Name=mRNA_H-elongata_contig19389.5385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6333bp|location=Sequence derived from alignment at H-elongata_contig19389:2..6334- (Himanthalia elongata Himel1 dioecious)
AGGCATGGCGAAGCAGATATACTTCCGGTGATTGCCCGCGGTCTGATGGC CTATTCCCCACGAGGGGAGTTGCACCAACCGCCGGCTTTCACAGCCTTCA CATGGGGGTTCGAAGTGCTTGGAGTCGTGTGCGTGGACGAGGGGTGAAAT CGCAAAAGAGGTGAGATTGCTGTAGACTTGTAGACTTGTGGCGGTCGATA GCCATTCCCGGTCGACTCTGACACTGTCTTACACTGTCTTACTGTCTACG CTTACATGGAAGGAGCGAGGAGAGGATAGCCCAAACCAAGCGGGCTTATG CTGACTTGCTCGCCGTAGTTGATTAGCTACAGGCGGTGCGGACTTGTATC CTGCGAGGGTTTCGTTTACCGATGTCATATTGCCTTTCTCTGCAGTTACC CTTTTGTTTTGTTTTGCTTCGTTTTGCTTTTTTGCTTTCATTGATTCCGC GGCTCTCCGATCAATCATTATTCGATAGGCATGTGTTCGTTAACGACTAT GCATGTCCTCCTTTTTTTCTTCGTTTTTTTCTTCGTTGGAGATGTCGCTT TTCCCGAGTATTATGCACCAGTGCCGTTTCCTTTTGTATGGACAGTACGT TGTACGTTTTTCCTTCCAGATGATGTTTTTCTACCTTGTGACCATGGGCT GAATGTTGGCATCAGCTTATCTGAGAATCCAATCAGTCAATGTAGGGCCT ACGTGTGAACCAGCTAGATCTTCTTTCAGTGATCTACAAAGTATTGCAGG TAGATGCCTAATATTATCCCTTCTCGACATCACCTGGACACGACGAACAG CGAAGCAGATCTCAAGAAGGATATCGCTTCCTTCTACGATTCCTCCTCCA CCATCTGGGAGGGCATATGGGGAGAGCATATGCATCACGGCTACTACGTC AAGGGAATGGCGCCAAAGACAATCGAAGATCACAGGTGAGCATATGCATC ACGGCTACTACGTCAAGGGCATGGCTACTCGTGCTCTCTAGTATGATGCT ACAGCAGAGTTAATGGGATCGGATCGTATTGCTGCTGTTCAATTTGAGCA CCACAAGCTGCCATTAGATTATATTCGCGACGCCTAGCCTGGTCCCCAGC TACCCCAAACTTAAAAATAATTGACGCCGTTTCGATGAAAACCGCGGGGG CCATTCACGCAGAATAGCCTACTTTCGTTCCTTTTCCAGCATAAAAGCGC CGCACAGTTCTCCCAAAGATAAACGCTGGGTCAACAGCATCGTGTACCAA GGAAATCCTTCCCAAATCCCTTGCATGGGTAGAGAGATATATCTAGGGCT GAAAGAACAAAATGACCAAACGCATCATGAAATCATTTGAACCACGCTTT CATGTTTCCAACATGTCAAACTCTTCTCTAAATACGCCATTGGGAGTGTG AGTAAGGGATGTGCTGTATGACGCTCCTGCATTAACATTTTGTTTCCGTG CCATAATCGTCATGAACGCCACGATCCTGGCAGAGCGGCCCAGAGGTTTA TGGTTAGTAGATCGTTGGAATGGGCCGGTGTGCAGGAGGGGAGCAGCGCG CCTAAAACCGGAATTGATGTCGGTAAGCCACGTCCCGTCCGACCTGCTGT GCACCAAGTATTAACCGTGTAGCTATAGGTGGTCTGAAGCTGTCAGGTTT GCTGTTGGCAAAGCTCCTTCTCAAGCAGGCGCTGGTGAAAGGACGCCTCA AGTGCTCATAACCACCGTACTGTTCCAGCAGTTTACTGTTGTACTATTAA ATACTGAGTACCTGATGATTGCGTTGTGCGACGTGAGGGTGAGGACTGGA GGAAGTTGTGCGCCGAACATGAACAAAAAGCAAGTTTTTAGTTATTCAGA GTAAGTGGAGAGTGTAAAGTGATAGAATGAGATGAGATGGGATGGGATAG GATGGGATAGGCAAGTAGACCGTGTGGCGGAATGAAGGCTCCTTTGTTGG CACTCGCTTCGATCTATTGTGCGTACGCGTGGACTTTGATGTTCCACCTT CAAAAACAAACTTTGACCAGGGTGCGGGATCGGGGGATCGTCTCGACAGA TAAGCAAGAGATACGGCACAGCGATGACGGGCATCACGCTTTCCCCGGTA CAGGTGCGGCGCGTCATTAGACTGTCCCTTTATGAAGCAACCAGATAGAT AACTCGAGGCGATCATATTCTCGAGAGCCTCGTTCTTCCAGATGCGGTGC TTGTACAAAATAGTGCCTATGATGATGGGGACGTTCGAGAGTACTATAAA TAGTATAGTATTTCTAGTATGTTATATCAAAGTTTTACCTCGTGGAGGCG AGAAAATCACAAAATGAACTGGTGTGGCAACGGGGTTGACGTTGCCTCCA AGCCACTTGATTGGCCTTTCACCCCTAAGCTCAAGTCATCCCAGTATTTT GCCACATACACGGGTTCGGCCCTCCAAAGAATGTTGCCACTACAATATCA GCTTGCTCAAGTTTAGATCAAGTTTAGATCAGCCGGTTTCGGGTACTAAA CAAGGGACTTTAAATCGCCCCGTACGTCGTTTCCTGATCGAATATGCTCG CAACCCCTCTCCCCCCTTTTGGTGTTTTGCTTTTGTTACTCATAAATTTG ATGATGCTCATGCGACCCAGCGAGACAGAGCCCAGGCCATCTCCGAGCAG AAGGGCCTGGGCGATAAATGCAAGTTCATGGTGGGTATCGATCTTGCGGT TTTCGCGTGAAACTACTCGGTTGTAAAAAATCGGAGCTCTATACCGCAGA TTGCCGCCATGTATCGAGCTTGCCCCGCATCCATGATTCGGCAGTGAACG GCCGGACTTGGGTGCTTGGGATAGGGCAGCCACGTTCAGGACAGTGCAGT AGTATCTGCACTTGAGATGACATAGAAGCCAGCTTAGCGCTGTACAGAAT GAAGCTGACGCCCGCCCGAACGTGGGACGCTACAAACTGTCGGACATGAG ATCGCGTGTCGGATATTGTATGCCGTTTGTAGCTGGCACCTTTAGCATTA ACCCTTTAATAGAGTCTTCACCTAGTGCAGTCTAGTGTTTTTTAATCTGG GGTGAAGTATTGTCTAGTCTAGAATAGTGTAGTGGTGTACCTCATGAGAC ATGAAACCCAAGCCCGTGACGCGTGCCCCACTGGACAGGTGGCGGACGGT CTAAACACACCATTCGCCAGGGAGTCCTTCAACCTGGTCTGGAGTATGGA GTGTGGTGAGCACATGCCTCAAAGGTCCAAGTGAGTGCACGGAGACCCGT AGGTGTCGTTTTTGTCACAGTATGAACCCAATGCCGAGCGCGATATTGAT CCTCGCACACAATCCAGCGCCGCTCTCGTCTACGGTAGTTCCCTAGACTT GAAAAATATCTGTAATTTACTAATATTTTATTTTGCCGCCAAAGCCGACA GTGCCAATGTTTTACTGGTTCATGCTGTACTTTCCTTTCCTTGTTTAATA CTTTACCTAACCCTAACCCTAGTACCTACTGTAGTATTTTCAGGTTTCGA CTACTGCCTCTAAAATATGTACCAATACCATCGGTAGTGTTTAGCTCTTA AGACAAGAGGTACTGGGTTTAGTAGTACAGCACACCTATCGACGGACTAT AGTAAGATGTTTTATCTCTTTTCAGATTCATATTTTCTATTTTCCCGTTA TGTATGTTAATAGATGCCATATTGCTATAAATCTCCAGTCAACTGCCGTG TGTAATGCGCTCCTGCTCCTGCTCCTGTATTGCTGTATTGCCGTCGTTGT ATCATATTCTAGGTGGGTGGCGGAGATGTCACGCATCTGCGCACCTGGTG GCCGTATCCTTGTTGTGGCGTGGTGTCACCGTGATTTAGAGGAAAGCGAG ACGGCGCTGACGCCCAAGGAGCAGGAGCTCCTCGAAAGGTTACTGTGTCC GAAAAACAGTAACCGACGTGATTAATGGAGGTTTCGAGTACTTTTTTACC CTGGGGGCGAGGGGGATCGGTCATTACGGGACGCTGGACTGTGGAGCATG TATTGCTGAGTAGGAACACGTTGGGCTGGTGGAAGTTGTCACTGTTTCAA TCGCCCTTTTGTATATAATTTGTAGCCCAGGTGAAGCCGTTCACCGGCGA TGTCCCATAGAGCTTTGAGCGTGGAGACAGCCAGAAGTTTTGCAATGCCT GGTAGCCAGCTGACCTTGCTTGATTCACATGAACACAAACGCATCGGGAC GTTAAGCCGATGTATAAGCTAACTCCGACCCTCTAATACCGTGTCGGGGG GCTATAAATTACAAGTGTTGCATATCGAATCGAAAAAGTTCGATATATCG ACGATATATATCGAATCGAATCGTGAATCGAACATATTTGACTTTTTCGA TTCGATTCGATATTTCGATATATACATACCCCCACGGGACGTATTAGGGA GGGGGCATTTAAAGGTAATTTCGATGGGAAATGAAGCGAAAATACACCAA ATGTTTCACCTATGACGGGGCACCTCCAGCCGGAGGGGGGCGATTGGGCT CGCACAGCGAGCTTCCATATCGATATCGATATCGAATCTCTTCGCTGGTT CGATATGCAACACTAATAATCACAGCCACTATTTAACAGTTACGGTTACA GTCGAGGAATTTAGCTGCAGGTAACGCCACACGAAAACCTATTCCCTTCT CTCGAAGGCACCCGCCCCAACCGCTGGCGAATCTTGTCCCTTAAATAACA TACAACGGCACGAGGGTCCAAGTTTTGTCTGTGCTTTTCCCCCCTGATTT TTCGGACAGGATCGGCAAAGTGTACTGCCTCCCCCAGTGGTGTTCTCCAT CGGACTACGTAAAGTACTTCGAGGCAGAAGGGCTGGTGGACATCAAGACG GCTGACTGGACTGACAACATTCAGGTCAGATTAGGTCAGCGCTCGCCAAG GCGTCACTTCAGCTGGGGCTACTTGTGTGTACCGCTGTATGCCTTCGGTA CCGAACCACGTTGGATACAAGAGCTGGGTGTAGTTCTGAGTTGTACTTTA CTTGCCGCTTGGGAGGGAATTAGAGTCTATTATCGTTTGAACGGGTTATT TGACCGTTACTAGGTAGTCACAGCGGAGTCAGTCCAGGTGAAATTCATAT AAGGTACTACCGCCGATCACAACGTGCTCGATGAAATCGGTACGGTCACC CGAGGGATTCTCGGCTCCAATATCACGAGACACCTTTGGTATCGAAATGG TAACACCCCACTTTGCCCTTGAGTTTCGTGTCTGTGCCTTGCGCCGATTT TTGGTTATGTACCAATGTGCTACTGTAGGAGTTTTGGCCTGCGGTGATCC GGTCTTCACTCACCCCCAAGGGATTCTTCGGACTTCTCAAGTCTGGCCCC ACCACCATCAAAGCGGCGATCGCCATGTTGGTAAGCCAGCGAGTCTACGC TGTTGCAGAGCCCCCGCGGATGTTTCTATCTTATCATGTATTATGGATGT GCCTTAATGCACATTAAAGTTCCGTTCGTTGGATACTAACTTATTTGATA GAGCTGCTCTCCGATTCAGCCATTTTTATCATTGCGGGATACTCTGCACT TCCAGTACATGTCCAGTATAGTAGGATGCGCGAAGCAAGGAGCCTAATCT TTCCGGCCACTTGAAACGAAAGCTTTGTTTACATCCGCCGCCGACCGCTT GGTTCACCTGCTATACATGAGTCGGGCCCCCTCCTAGAAAGGCACCTAAC TCCGATACTCGCCTCTTACTGGCCCCGTCCCACGCCTCTCGGCAGTGGAT GGTTCGAGGGTACAAGACGAACCTGGTGAAGTTTGCACTGGTGACTGCAA AGAAGCCGTGAAGAGTACCTGGTAACAGTTTACTCCAAGGACCTCTAAAG CATTCGATCCGCGGGCGAGGCAAGAACCCCACGTATTTTCCTTCTAGAGC ACGATTTTGAACGCTTTCGACCGGTACTTTACAACAGTGCCTTTTGCCTA GTAAAAGAGGTATCGGCAAGAGGTAAGTCGAGTCCCCTCTTTTCCCATGA AAGCACGTCCTTCTTCGAAAAGCGACCCTCGTGTGAGCAGAACGTACGTA CGAACGTGCTTTGCCGCATCAAGCTCCCGTCGTTTTCGAGGCTGGCCCTG TGTGTTTCCGGAGTAACATCCAATACTGTACGTTCCATTTTAGACGGGAA GCGGTTGGCTATATCTGGTGCTGCTCGTCGCTGCGCGCCTCGAGGCGGCC GCTCTAAATCTCCTTAGTGTTGATTGCATTTGATTCCGACCGGGGGCGAC GTACTTATGCTATTAATAGCTTGAATATTAATAATAAAAAATGTTTCAGG TCTGCGATAGGTCGCTCTCCCTTTAGATGAGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19389:2..6334-

>mRNA_H-elongata_contig19389.5385.1 ID=mRNA_H-elongata_contig19389.5385.1|Name=mRNA_H-elongata_contig19389.5385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig19389:2..6334- (Himanthalia elongata Himel1 dioecious)
ATGGGGGTTCGAAGTGCTTGGAGTCGTGTGCGTGGACGAGGGGTGAAATC
GCAAAAGAGATGGGGGTTCGAAGTGCTTGGAGTCGTGTGCGTGGACGAGG
GGTGAAATCGCAAAAGAGCGAAGCAGATCTCAAGAAGGATATCGCTTCCT
TCTACGATTCCTCCTCCACCATCTGGGAGGGCATATGGGGAGAGCATATG
CATCACGGCTACTACGTCAAGGGAATGGCGCCAAAGACAATCGAAGATCA
CAGCGAAGCAGATCTCAAGAAGGATATCGCTTCCTTCTACGATTCCTCCT
CCACCATCTGGGAGGGCATATGGGGAGAGCATATGCATCACGGCTACTAC
GTCAAGGGAATGGCGCCAAAGACAATCGAAGATCACAGAGCGGCCCAGAG
GTTTATGGTTAGTAGATCGTTGGAATGGGCCGGTGTGCAGGAGGGGAGCA
GCGCGCCTAAAACCGGAATTGATGTCGAGCGGCCCAGAGGTTTATGGTTA
GTAGATCGTTGGAATGGGCCGGTGTGCAGGAGGGGAGCAGCGCGCCTAAA
ACCGGAATTGATGTCGGGTGCGGGATCGGGGGATCGTCTCGACAGATAAG
CAAGAGATACGGCACAGCGATGACGGGCATCACGCTTTCCCCGGTACAGG
GTGCGGGATCGGGGGATCGTCTCGACAGATAAGCAAGAGATACGGCACAG
CGATGACGGGCATCACGCTTTCCCCGGTACAGCGAGACAGAGCCCAGGCC
ATCTCCGAGCAGAAGGGCCTGGGCGATAAATGCAAGTTCATGCGAGACAG
AGCCCAGGCCATCTCCGAGCAGAAGGGCCTGGGCGATAAATGCAAGTTCA
TGGTGGCGGACGGTCTAAACACACCATTCGCCAGGGAGTCCTTCAACCTG
GTCTGGAGTATGGAGTGTGGTGAGCACATGCCTCAAAGGTCCAAGTGGCG
GACGGTCTAAACACACCATTCGCCAGGGAGTCCTTCAACCTGGTCTGGAG
TATGGAGTGTGGTGAGCACATGCCTCAAAGGTCCAAGTGGGTGGCGGAGA
TGTCACGCATCTGCGCACCTGGTGGCCGTATCCTTGTTGTGGCGTGGTGT
CACCGTGATTTAGAGGAAAGCGAGACGGCGCTGACGCCCAAGGAGCAGGA
GCTCCTCGAAAGGTGGGTGGCGGAGATGTCACGCATCTGCGCACCTGGTG
GCCGTATCCTTGTTGTGGCGTGGTGTCACCGTGATTTAGAGGAAAGCGAG
ACGGCGCTGACGCCCAAGGAGCAGGAGCTCCTCGAAAGGATCGGCAAAGT
GTACTGCCTCCCCCAGTGGTGTTCTCCATCGGACTACGTAAAGTACTTCG
AGGCAGAAGGGCTGGTGGACATCAAGACGGCTGACTGGACTGACAACATT
CAGGATCGGCAAAGTGTACTGCCTCCCCCAGTGGTGTTCTCCATCGGACT
ACGTAAAGTACTTCGAGGCAGAAGGGCTGGTGGACATCAAGACGGCTGAC
TGGACTGACAACATTCAGGAGTTTTGGCCTGCGGTGATCCGGTCTTCACT
CACCCCCAAGGGATTCTTCGGACTTCTCAAGTCTGGCCCCACCACCATCA
AAGCGGCGATCGCCATGTTGGAGTTTTGGCCTGCGGTGATCCGGTCTTCA
CTCACCCCCAAGGGATTCTTCGGACTTCTCAAGTCTGGCCCCACCACCAT
CAAAGCGGCGATCGCCATGTTGTGGATGGTTCGAGGGTACAAGACGAACC
TGGTGAAGTTTGCACTGGTGACTGCAAAGAAGCCGTGATGGATGGTTCGA
GGGTACAAGACGAACCTGGTGAAGTTTGCACTGGTGACTGCAAAGAAGCC
GTGA
back to top