mRNA_H-elongata_contig19383.5381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19383.5381.1
Unique NamemRNA_H-elongata_contig19383.5381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: A0A6H5L8C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8C0_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 1.420e-122
Identity = 173/223 (77.58%), Postives = 198/223 (88.79%), Query Frame = 1
Query:    1 RVKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVKK 669
            +VKTRQHVNPLAATFQ PV LPE WF +AF +P APLLVDIGCAKG+F+ +MA  +P++N+LGLEIRRP AALAL R   LGTRNCH VCCN NVDLDAVL+EAA++GASIDT+CIQFPDPHFKTKHYKRR++QPELV CIE+HL PGG LFMQSDVL+V+EDMR+I RETA +LED+RPDMEDWMEGP++NPFGVQTEREKVTY KE   ENRVYRC+FVKK
Sbjct:  148 KVKTRQHVNPLAATFQAPVVLPERWFQAAFRDPTAPLLVDIGCAKGSFVRAMATEHPERNYLGLEIRRPTAALALERAARLGTRNCHVVCCNANVDLDAVLTEAAQHGASIDTVCIQFPDPHFKTKHYKRRVLQPELVTCIEKHLEPGGTLFMQSDVLEVVEDMRVIARETARVLEDTRPDMEDWMEGPDKNPFGVQTEREKVTYEKESAEENRVYRCVFVKK 370          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: D7FPV8_ECTSI (tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV8_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.660e-122
Identity = 171/223 (76.68%), Postives = 198/223 (88.79%), Query Frame = 1
Query:    1 RVKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVKK 669
            +VKTRQHVNPLAATFQ PV LPE WF +AF + +APLLVDIGCAKG+F+ +MA  +P++N+LGLEIRRP AALAL R   LGTRNCH VCCN NVDLDAVL+EAA++GASIDT+CIQFPDPHFKT+HYKRR++QPELV CIE+HL PGG LFMQSDVL+V+EDMR+I RETA +LED+RPDMEDWMEGP++NPFGVQTEREKVTY KE   ENRVYRC+FVKK
Sbjct:   11 KVKTRQHVNPLAATFQAPVVLPERWFQAAFRDLSAPLLVDIGCAKGSFVRAMATEHPERNYLGLEIRRPTAALALERAAGLGTRNCHVVCCNANVDLDAVLTEAAQHGASIDTVCIQFPDPHFKTRHYKRRVLQPELVTCIEKHLEPGGTLFMQSDVLEVVEDMRVIARETARVLEDTRPDMEDWMEGPDKNPFGVQTEREKVTYEKESAEENRVYRCVFVKK 233          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: A0A835ZDY0_9STRA (Guanine-N(7)--methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY0_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.970e-63
Identity = 102/223 (45.74%), Postives = 146/223 (65.47%), Query Frame = 1
Query:    1 RVKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVKK 669
            ++K RQHVNPLA++ QQPV L +GW+  AF +   PL +DIGCA G F + MA A P +N+LGL+IR P+ A+AL +  E    NCH + CN NV+L+ +L +    G  ++ + +QFPDPHFKT++ K+R+++PELVE I++ L PGG LFMQ D+ +V  +MR+ITR+    L+D   +++ W+     NP G+ TERE     K       VYRCMF K+
Sbjct:   47 KLKARQHVNPLASSHQQPVQLVDGWYRKAFADTTKPLHLDIGCAYGRFCLDMATADPTRNYLGLDIRWPVVAVALCKATERTLDNCHFISCNANVNLERILGDVIAAGGVVERVSVQFPDPHFKTRNKKKRVLKPELVETIQQFLSPGGTLFMQGDIHEVQREMRLITRKVGTGLQDLEANVDSWLS---HNPMGIPTERELAVQAK----GGDVYRCMFKKR 262          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: A0A0G4HX35_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HX35_9ALVE)

HSP 1 Score: 185 bits (470), Expect = 1.700e-51
Identity = 97/218 (44.50%), Postives = 128/218 (58.72%), Query Frame = 1
Query:    7 KTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMF 660
            K R+H NPLAA    P+DLPE W    F N + P+++D+GCA G + + MA+  P  NFLG+E+R P    AL R    G  N   +  N  VD D++L + + +G  +  + +QFPDPHFK  H KRR+V    V     HL+ G  +F+QSD+L+V EDMR   R    L  DSR  +EDWMEG E NPFGV TERE+     E P    +YRC+F
Sbjct:   76 KPREHANPLAALHLSPIDLPEDWVSQVFANASQPVILDVGCAFGGWALQMAQKEPGVNFLGIELRGPPVEKALDRKDASGLTNLAYLKVNTLVDFDSILRDLSSDGCGVTYVTVQFPDPHFKKSHKKRRVVNRSFVGSCAVHLKEGAHVFLQSDILEVAEDMREHFRSAGPLFRDSRASVEDWMEG-EANPFGVPTERERGRIENEEP----IYRCVF 288          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: A0A7S2ZC14_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZC14_9RHOD)

HSP 1 Score: 175 bits (444), Expect = 8.600e-49
Identity = 99/216 (45.83%), Postives = 130/216 (60.19%), Query Frame = 1
Query:    1 RVKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVY 648
            +V+TRQHVNPL+   Q+PV+L + W  + FE+      VD+G AKG FL  MA+  PD+NFLGLEIR+P+   A     +   RN   + CN NV LD VLS        +DTI +QFPDP FK +H KRR++QPELVE I +HL+P G L++ SDVL+V E M  +  E   L  DS P+   W+    +NPF V TEREK     +     +VY
Sbjct:   45 QVRTRQHVNPLSEHMQKPVELEQEWPKNKFESLERSFHVDVGVAKGRFLFDMAEKNPDKNFLGLEIRKPLVDQANNWRDDRNLRNLDFIFCNANVSLDEVLSRLP--AGMLDTISVQFPDPWFKKRHQKRRVLQPELVEVIAKHLKPSGILYVISDVLEVAEQMDEVVSENP-LFRDSTPNA--WIG---ENPFNVLTEREKACINHQRDVHGKVY 252          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: A0A8K2A2R3_9CYAN (tRNA (Guanosine(46)-N7)-methyltransferase TrmB n=1 Tax=Petrachloros mirabilis ULC683 TaxID=2781853 RepID=A0A8K2A2R3_9CYAN)

HSP 1 Score: 172 bits (437), Expect = 2.240e-48
Identity = 100/221 (45.25%), Postives = 135/221 (61.09%), Query Frame = 1
Query:    4 VKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVK 666
            V+ RQHVNPL+A +Q+    P+  +   + +   PL +DIGCA+G FL++MA+A+PD NFLG+EIR P+   A      LG  N H + CN+N  L ++L   +  GASI     QFPDP FK +H KRR+++PELV  + R L+PG  LF+QSDVL+V  +MR +  E      D RP    W+E   QNPF V TERE +T    L A   VYRC F++
Sbjct:    4 VRVRQHVNPLSAKYQEATAAPD--WAQIYAHRTRPLHLDIGCARGQFLLAMAQAWPDWNFLGVEIREPLVIKANQDRDALGLSNLHYLFCNINPSLRSLLLPQSLQGASI-----QFPDPWFKRRHQKRRVLRPELVADLARCLQPGSLLFLQSDVLEVAAEMRHLVGEHP----DFRPQPHGWLE---QNPFPVPTERETLT----LKAGQPVYRCQFLR 206          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: R1BVT0_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BVT0_EMIHU)

HSP 1 Score: 174 bits (440), Expect = 8.060e-48
Identity = 107/224 (47.77%), Postives = 133/224 (59.38%), Query Frame = 1
Query:    7 KTRQHVNPLAATFQQPVDLPEGW-FHSAFENPNAPLLVDIGCAKGTFLMSMA-KAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAE-LLEDSRPDMEDWMEGPEQNPFG-VQTEREKVTYGKELPAENRVYRCMFVK 666
            K R HVNPL     QP+DLPE W    AF  P+ PL VDIGCA+G F + +A ++    N LGLEIR  +A  A      LG  N   + CN NV+L+AVL  A+R G  + ++ IQFPDP FK +H KRR+VQPELVE I RHL PGG LF Q+DVLD+ +D R   R+ A   L D+R D  DW   P+  P   V TERE+     + P    VYR +F K
Sbjct:   57 KIRHHVNPLKDVHMQPLDLPERWPEEGAFTQPDLPLHVDIGCARGLFCLDLAAESSGSANVLGLEIRSALAEAAAEDARRLGVANAAFLPCNANVNLEAVLLRASRCGP-LQSVSIQFPDPWFKARHKKRRVVQPELVETIARHLEPGGWLFFQTDVLDLAQDARDTIRQAAAGTLRDAREDAGDWA-APKPKPLACVSTERERSCAELQRP----VYRAVFEK 274          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: UPI001A8C6F10 (tRNA (guanosine(46)-N7)-methyltransferase TrmB n=1 Tax=Phormidium pseudopriestleyi TaxID=1759527 RepID=UPI001A8C6F10)

HSP 1 Score: 169 bits (427), Expect = 8.910e-47
Identity = 105/223 (47.09%), Postives = 135/223 (60.54%), Query Frame = 1
Query:    1 RVKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVKK 669
            RV+ RQHVNPL+  +Q P+ +P  W    + NP  PL +DIGCA G FL+ MA   PD NFLG+EIR P+   ALA+  E    N H + CN+N    A L E+   G  +  + IQFPDP FK +H KRR+VQPELVE + ++L PGG +F+QSDV DV  +MR    E +      R   EDW+  PE NP  V TERE+ T  K+ P    VYR +F+KK
Sbjct:    3 RVRVRQHVNPLSYAYQTPI-VPPTW-SQVYTNPAQPLHLDIGCAWGRFLLQMAAIEPDWNFLGIEIREPLVETALAQRDEEKLSNLHFIFCNINHTF-APLIESLPPGI-LHRVSIQFPDPWFKKRHQKRRVVQPELVENVAKYLVPGGMVFLQSDVHDVAIEMRDRFAEHSSF---ERQGGEDWL--PE-NPMPVATEREQSTLDKDEP----VYRVVFLKK 211          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: A0A1U7IZN9_9CYAN (tRNA (guanine-N(7)-)-methyltransferase n=11 Tax=Cyanobacteria TaxID=1117 RepID=A0A1U7IZN9_9CYAN)

HSP 1 Score: 168 bits (426), Expect = 1.080e-46
Identity = 98/221 (44.34%), Postives = 134/221 (60.63%), Query Frame = 1
Query:    4 VKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVK 666
            V+ RQHVNPL+  +Q PV++P   + + F NP  PL +DIGCAKG FL+ MA+  P+ NFLGLEIR+P+   A  R  E    N H + CNVN+ L ++L E+  +   +  + IQFPDP FK +H KRR++QPELV  I   L  GG L +QSDV +V  DM     E    L   +    DW+  PE +PF  QT+RE+VT  + LP    V+R +F++
Sbjct:    4 VRVRQHVNPLSGKYQAPVEVPN--WSAVFANPQQPLHIDIGCAKGVFLLQMAQLQPEWNFLGLEIRKPVVESAQKRQQEAELTNLHFMYCNVNISLRSLL-ESWGDQNPLQQVSIQFPDPWFKKRHQKRRVLQPELVSTIAEFLPSGGRLVVQSDVEEVAVDMCDRIAENPHFLRQGQ----DWL--PE-SPFPAQTDRERVTLEQGLP----VHRAIFIR 210          
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Match: UPI0005603905 (tRNA (guanosine(46)-N7)-methyltransferase TrmB n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI0005603905)

HSP 1 Score: 168 bits (425), Expect = 1.520e-46
Identity = 97/221 (43.89%), Postives = 131/221 (59.28%), Query Frame = 1
Query:    4 VKTRQHVNPLAATFQQPVDLPEGWFHSAFENPNAPLLVDIGCAKGTFLMSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDAVLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGGALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTEREKVTYGKELPAENRVYRCMFVK 666
            V+ RQHVNPL+  +Q PV +P+  +  AF NP  PL +DIGC KG F + MA+  P+ NFLGLEIR+P+   A  R  E G  N H + CNVN+ L A+L E+  +   +  + IQFPDP FK +H KRR++QPELV  +   L PGG + +QSDV +V  DM     E    L    P  + W+     +PF  QT+RE+VT  + LP    VYR +F +
Sbjct:    4 VRVRQHVNPLSERYQAPVAMPD--WSEAFANPQQPLHIDIGCGKGVFALHMAQLQPEWNFLGLEIRKPVVESAQKRQQEAGLSNLHFMYCNVNISLRALL-ESWGDQNPLQQVSIQFPDPWFKKRHQKRRVLQPELVATLAEFLPPGGRVVVQSDVEEVAVDMCDRLSEHPHFL----PQGDRWLPA---SPFPAQTDRERVTLEQGLP----VYRAIFTR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19383.5381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8C0_9PHAE1.420e-12277.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPV8_ECTSI1.660e-12276.68tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Ect... [more]
A0A835ZDY0_9STRA3.970e-6345.74Guanine-N(7)--methyltransferase n=1 Tax=Tribonema ... [more]
A0A0G4HX35_9ALVE1.700e-5144.50Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2ZC14_9RHOD8.600e-4945.83Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8K2A2R3_9CYAN2.240e-4845.25tRNA (Guanosine(46)-N7)-methyltransferase TrmB n=1... [more]
R1BVT0_EMIHU8.060e-4847.77Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
UPI001A8C6F108.910e-4747.09tRNA (guanosine(46)-N7)-methyltransferase TrmB n=1... [more]
A0A1U7IZN9_9CYAN1.080e-4644.34tRNA (guanine-N(7)-)-methyltransferase n=11 Tax=Cy... [more]
UPI00056039051.520e-4643.89tRNA (guanosine(46)-N7)-methyltransferase TrmB n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19383contigH-elongata_contig19383:2..4813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue1.3e-75
Seed eggNOG ortholog2880.D7FPV8
KEGG rclassRC00002,RC00043
KEGG koko:K00927,ko:K03439
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019253,GO:0019538,GO:0019685,GO:0030312,GO:0031967,GO:0031975,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901576
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGsCOG0220@1,KOG3115@2759
EC2.1.1.33,2.7.2.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA (guanine-N(7)-)-methyltransferase
Ec32 orthologEc-01_008520.1
Exons8
Model size1226
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19383.5381.1prot_H-elongata_contig19383.5381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19383 626..3169 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.7468874-UTR-H-elongata_contig19383:1..2821622930103.7468874-UTR-H-elongata_contig19383:1..282Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 2..282 -
1691679281.3827577-UTR-H-elongata_contig19383:1..2821691679281.3827577-UTR-H-elongata_contig19383:1..282Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 2..282 -
1622930103.7672582-UTR-H-elongata_contig19383:370..6251622930103.7672582-UTR-H-elongata_contig19383:370..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 371..625 -
1691679281.410538-UTR-H-elongata_contig19383:370..6251691679281.410538-UTR-H-elongata_contig19383:370..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 371..625 -
1622930103.8949666-UTR-H-elongata_contig19383:3169..31921622930103.8949666-UTR-H-elongata_contig19383:3169..3192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 3170..3192 -
1691679281.503411-UTR-H-elongata_contig19383:3169..31921691679281.503411-UTR-H-elongata_contig19383:3169..3192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 3170..3192 -
1622930103.9115388-UTR-H-elongata_contig19383:4689..48131622930103.9115388-UTR-H-elongata_contig19383:4689..4813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 4690..4813 -
1691679281.5151525-UTR-H-elongata_contig19383:4689..48131691679281.5151525-UTR-H-elongata_contig19383:4689..4813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19383 4690..4813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.793749-CDS-H-elongata_contig19383:625..7301622930103.793749-CDS-H-elongata_contig19383:625..730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 626..730 -
1691679281.4198663-CDS-H-elongata_contig19383:625..7301691679281.4198663-CDS-H-elongata_contig19383:625..730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 626..730 -
1622930103.8082736-CDS-H-elongata_contig19383:1524..15921622930103.8082736-CDS-H-elongata_contig19383:1524..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 1525..1592 -
1691679281.4337137-CDS-H-elongata_contig19383:1524..15921691679281.4337137-CDS-H-elongata_contig19383:1524..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 1525..1592 -
1622930103.825468-CDS-H-elongata_contig19383:1973..20881622930103.825468-CDS-H-elongata_contig19383:1973..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 1974..2088 -
1691679281.4501073-CDS-H-elongata_contig19383:1973..20881691679281.4501073-CDS-H-elongata_contig19383:1973..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 1974..2088 -
1622930103.8426635-CDS-H-elongata_contig19383:2407..24521622930103.8426635-CDS-H-elongata_contig19383:2407..2452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 2408..2452 -
1691679281.468676-CDS-H-elongata_contig19383:2407..24521691679281.468676-CDS-H-elongata_contig19383:2407..2452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 2408..2452 -
1622930103.8621473-CDS-H-elongata_contig19383:2725..28001622930103.8621473-CDS-H-elongata_contig19383:2725..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 2726..2800 -
1691679281.4796605-CDS-H-elongata_contig19383:2725..28001691679281.4796605-CDS-H-elongata_contig19383:2725..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 2726..2800 -
1622930103.8767092-CDS-H-elongata_contig19383:3034..31691622930103.8767092-CDS-H-elongata_contig19383:3034..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 3035..3169 -
1691679281.4893734-CDS-H-elongata_contig19383:3034..31691691679281.4893734-CDS-H-elongata_contig19383:3034..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19383 3035..3169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19383.5381.1

>prot_H-elongata_contig19383.5381.1 ID=prot_H-elongata_contig19383.5381.1|Name=mRNA_H-elongata_contig19383.5381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MSMAKAYPDQNFLGLEIRRPIAALALARTVELGTRNCHPVCCNVNVDLDA
VLSEAARNGASIDTICIQFPDPHFKTKHYKRRIVQPELVECIERHLRPGG
ALFMQSDVLDVLEDMRIITRETAELLEDSRPDMEDWMEGPEQNPFGVQTE
REKVTYGKELPAENRVYRCMFVKKLRAEMK*
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mRNA from alignment at H-elongata_contig19383:2..4813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19383.5381.1 ID=mRNA_H-elongata_contig19383.5381.1|Name=mRNA_H-elongata_contig19383.5381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4812bp|location=Sequence derived from alignment at H-elongata_contig19383:2..4813- (Himanthalia elongata Himel1 dioecious)
AGGGTGAAGACGAGGCAGCACGTGAATCCCCTGGCGGCAACGTTTCAGCA GCCGGTCGACCTACCGGAAGGGTGGTTCCACTCGGCTTTTGAGAATCCCA ACGCGCCGCTGTTGGTGGACATCGGTGAGTGATGGGTGGTTCTCCAGCGG CGTGTTCACAGGTAATATACGAAGTAGGTTTTTATCCGGTCCTGTGTCTG GTTCCTTCGGCTTGGTAATTATTGTATTGTTTGGTCATCACATACAGCAA AGCTAAAGGGATACTATTCTCGGTAACTGTTATATAATAGGGATACTAAT ACAAGTATTGGGATATTATTTTAGGGGTACTAATGTTAATTGTTGTTGTT GTTGTTGTTGTTGGTCATACATTTAGCAGAGTAAGGTCAACCGTATTTGG TTGCCTTCTGCTCGTGGTCAGCTGAACAGGGAAAATAATTTTCCCCTGTC CCCGTTGAGATATTTTGGAAATTTGAAGGGTGTGAGCTGTAAAAGACGTG GGTATGCCGTACGAGGGCTCGTCCCGCGATCGGCGCTATGATGACTACGT AGTTTCAGCATCGCGTTTCGTGCGAGTTTTGGAGCACGCGGCCTGACCGA CATACCCACGCAACTGCTCTCTCGATGTGCGAAACCAAAGGCCTCCAATA TCGTTCTAAAAAATTTGGAAATATTATGTATACAAGTGCGTACCGTAGTT CTTCTAGGCTCTAGAGTCACCCACAAGTACATAATACAGCACGCATCCAC GCCCACAGCAGCAGCAGGTATAGCAGTAGGGACTCCAATGCCGGCAGAAA ATGTAAAGACGGCACACTACACGCGCGCGATGCTTGCCAGCGCCAGAAAC AGGGCGCTGCAAACATTTCCCTGGTATCCAAATCCACAACGTCTTGGAAT CAATGCTTGAAACACTCGCCTCTTCAGAGTACACGAACGAGTACCTCGAT TGGTGTTTGCTCCATCGCAAACGAAATCCAATACCCAGGTAACCAAGTGC AGCACCGCGGTCTGAGACTCGCGACAAGCTTTGTGTAAACAGCTTTCTCT GACCACGTCCAAAGAATTTGCGTCACCGCGTGCCCCACAGCATAAAGTCA TCCGCGTTAGCATACTTAAGAGGTCGAACAACTTACCCCACCAGCCCCAT TTTCCCAATTATTTGAGGGTAGCTTTGATCCACACATGCCTCTAGCCATA ATTCCCTGGGCTCAAACTTTATGGAGTCCATGCCAGCCAATCTTGCCCCG TCGGACACAGAGGATGCACCAGTCTGTTTTAAAAACCGTGTTCGCGACTG CATGAGACCCGTTTCGGAACCTATCGTACGTTATTTTTTTCCCCCTCTGT GTAAATACTTTCAAAGCAGCTCCAAGCCAACCGACACCCCGTCTGCTTGT TTAAGCATTTGGAAGGTTTCCCAGCTGAAGTTTAAAGAATCTGAAAATTG TGCAGTTTTACACCAACCGACCTTTTGCTCATTGAGCTCCACCACACGGA AAGCTTGGACATGCTTCACGCCCACAGTTTTATTCTGAATCACGGTGTCC CTTTCCCTCGCTCCATACGCCGCCATCCGATCGTTGTGGTGTGGGCCCTT CGTGTATCGACCCCGAACAAGGCTGCGCCAAGGGCACGTTTTTGATGAGC ATGGCAAAGGCATACCCAGACCAAAACTTCTTGGGATTGGAGATTCGGCG ACCGATCGCGGCCTTGGCGCTAGCACGAACGGTTGAGCTAGGGACACGAA ACTGTCACCCAGTGTGCTGCAACGTAAATGTGAGCCGAGAATTCCGCGGA ATTAATATTCCCCTCCTTTTTTTCGTTCCCTTTCTTTTTTTCCGTTCATA AATATAGGTATATTAATATCTAGTCGCTGCAAAAATGTCATATGTAAAGG CAGCAGCTAGCTGCAGCTTCGTGAGTATCTATAAACATCCGTTACCATCA AGCCCAGTGCCTCCTCACTCTTTTTTTTGTATCTCTCTCTCCCATGTCTA TTGACGGTTCCAGGTAGACTTAGACGCCGTACTCTCAGAAGCAGCGCGAA ACGGCGCATCGATCGACACGATATGCATCCAGTTCCCGGTAAGAACCACC GCTCGCCGCGATGGTGCATGTTTGTTCCCTCAAACGAGACAAAAAAATGT CCAGGCAAAGGGCGGGCGAGGGCATGTGCAACATCACGACACCGATCGCG TTGCGTCGTTTGCGTCTCCCATCAGGAATTAGGGGGGGGGGGATAGATAA GTAGATATGCGCGATAAGCGTGTGCGATTTCATTGCGGACTTGGTGTTCG GCTTCACTTAGCCCGCGTACAATGCCGCTGCTCTGTGCTCGTGCTCTTGG CCGCGTGACAGGATCCTCACTTTAAGACCAAGCACTACAAGCGAAGAATA GTACAGGTGAATACGAGGCAAAATTTCCTTTGAGGAACACCTTCTTCTCG CCTCTGCCGATGGTCATAGGTTGGCGAGGCGGAGGTGAAGTCCGTGGATG GTAAAACAAATGGAACTGTTAGCATGCGACGCGTCTCCCGCTGAACGCAA GCTCAGTGCTGCCGAACTCTCACGGAAACTACTGGGTGCGTCTGTCCTCG AGAACTGTGCTTGATATGGCGGGAAGGAGATATCGTAGAAGTATCGTGTA AAGACAGGGCTTATTTTTGGGAGTCCTGAGCTCTTCTCCGACACACCTTC CCTCCCCCCCGCGGCCTTTCGGCAGCCGGAGCTTGTCGAGTGTATCGAGA GGCACTTGAGACCCGGGGGTGCCTTGTTCATGCAATCGGACGTGCTCGAT GTTCTGGAAGACATGCGAATCATCACTCGAGAAACAGCAGGTTTGTGTGA TTGTTTTGAGCAGCAGATCGGCCGGATTCCTCCGCCAACGAGCTTCCCGA CCGACGGTAAAATGAGGCGTTGTGAATCAGCTAGGGGGAGGCTTGGATTG TTGATTCTTCCCATCAAAAGTCGTTCGTTCGTGGGGTCACCTTGTGCTCA CCAGCATCCAGCGAGATCTTGCAAAAGTTGACATCACATTTATCATCAAT ATGTAGACGCGGATCGCGACATGCGTGCACTTTTTGTTCCCCTCCTCAAT TGAAAATCAACCTTTTCAAATAGTCTAAAGGGTATCCCTGCTTAAACGGG GGACTCCTACCCCTCTTTCCTCGGTGTACTTTCAAACTCCGGTGCTGTCG GAACGCTCAATCGAGGAACAGAGCTGCTCGAAGACTCCCGACCAGACATG GAAGACTGGATGGAAGGGCCTGAACAGAATCCTTTTGGGGTTAGTATTCT ACTCCCTGCGCGCAAAAAGGATAGGCGTTGCGCGAATTTGACGCTAGATG GAAATTACACTTTCCCTCGTTGTCTAGAAGAAAAAAAGGAAGGGGTTTTC ATTTATTTTACCGTCAACAGTCGGTACGGTAGTGTGCAGCACCCGTGCCA TTGCTTGATACGCGTGCAGACTAGTTAACCGGTCGCGAGGCCGGTATATT CCGCGTTTGTTGAATGTTGCACGTTACTACTACTCTTGCTAGAACTCAGC GCTGACTAGGCTACTAGGCTAGCAATGATGGCAAACGCGATGACTAAATA ACACAAAATCTTCATCCGGTGTTCGAGTCCTACTAAGCCTTCTCTGGTAG CTTTAAAGTCTTAAACGAGAGAGAAACACAAACCTCGGATGAAGAAAGCG GTTGAGACCGGGATGGAACGCGGATAACAGGGCTGATTCCAGGTCATGGA TTGAGGCCTTGGGGGTCGAAATCGGGGGCTTAGTCGTGAAATATAGCACG TTACTAACTATAATAGCGGAAGTGGTAACGTGCTACCGGTACATCTTAAC GTGTCGGGGCAATCATCCGACAGAAATCTTGGAACACCTTTCACCCAGAC GCCCGTCTTCCTTTTCCCGTACGCCATCCGCCACTGATGTTAGTTGTCGC TGACTTGTGGGCATATATTTATATATATATATATATATATATACAGTATA TATACATACATATATTACAAGATGCTCGCCCTTTCGACGTCCGGGGCGTC ATCGCTCCGTCGTCTGGCTGCTTCGTTTCGCAGGTGCAGACGGAAAGAGA GAAGGTTACCTACGGGAAGGAATTGCCTGCGGAAAACCGGGTGTATCGCT GCATGTTCGTGAAAAAATTACGCGCCGAAATGAAATGACACTTGACGTGA CATATTGTACAGGTATGCGCGGACTCTTCGCCTTCTTCGCCGCACACTAA TAGGAGGAGGGGGTCACTAATAGGATGAGGGGGAGCGATGGTGTACCATG TGCACAAAGACAAGCCGGCTGACACCTCGAAATTAAAAAATCGTGTGGAA AATTAAGCCTTCAGCGTCGGCGGCGACACCTGATAATTTCTGTAACGAAT TCCAGATGAACATGGGGACCTAGAAAAGCTACAGTATCATATTGTTTTTT ATCTTAATATATACTAGTATATATATAATTATATATATATATATCGGAAA AAAGCGGGAGGAAAGTGGTCCCAGTGTATAGAATTTGCGGGGTCCACCTG CGTTACTGTAATAGCTCTATACACAAGAAGGGGTCGACCTTGGCGCTTTT GTCTTTGCCTCAGGCTCAGGCGTGGTACGACAAGCGGTGCTTTCATATTA TTTTTGTTTTTTTCTAGCGGTGATGTTTAACCTTGGGAAGATAGATGCTC TATGGCTTTATTTCATCTCCCGAATATCTTGCTGAACCTGACCAAATCTG GGAGATTTTTATTGTAACTGGTAGCATGTGAGGACAGAATTAATTGTTTG TACTGTTTCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig19383:2..4813-

>mRNA_H-elongata_contig19383.5381.1 ID=mRNA_H-elongata_contig19383.5381.1|Name=mRNA_H-elongata_contig19383.5381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig19383:2..4813- (Himanthalia elongata Himel1 dioecious)
ATGAGCATGGCAAAGGCATACCCAGACCAAAACTTCTTGGGATTGGAGAT
TCGGCGACCGATCGCGGCCTTGGCGCTAGCACGAACGGTTGAGCTAGGGA
CACGAAACTGTCACCCAGTGTGCTGCAACGTAAATATGAGCATGGCAAAG
GCATACCCAGACCAAAACTTCTTGGGATTGGAGATTCGGCGACCGATCGC
GGCCTTGGCGCTAGCACGAACGGTTGAGCTAGGGACACGAAACTGTCACC
CAGTGTGCTGCAACGTAAATGTAGACTTAGACGCCGTACTCTCAGAAGCA
GCGCGAAACGGCGCATCGATCGACACGATATGCATCCAGTTCCCGGTAGA
CTTAGACGCCGTACTCTCAGAAGCAGCGCGAAACGGCGCATCGATCGACA
CGATATGCATCCAGTTCCCGGATCCTCACTTTAAGACCAAGCACTACAAG
CGAAGAATAGTACAGGATCCTCACTTTAAGACCAAGCACTACAAGCGAAG
AATAGTACAGCCGGAGCTTGTCGAGTGTATCGAGAGGCACTTGAGACCCG
GGGGTGCCTTGTTCATGCAATCGGACGTGCTCGATGTTCTGGAAGACATG
CGAATCATCACTCGAGAAACAGCAGCCGGAGCTTGTCGAGTGTATCGAGA
GGCACTTGAGACCCGGGGGTGCCTTGTTCATGCAATCGGACGTGCTCGAT
GTTCTGGAAGACATGCGAATCATCACTCGAGAAACAGCAGAGCTGCTCGA
AGACTCCCGACCAGACATGGAAGACTGGATGGAAGGGCCTGAACAGAATC
CTTTTGGGAGCTGCTCGAAGACTCCCGACCAGACATGGAAGACTGGATGG
AAGGGCCTGAACAGAATCCTTTTGGGGTGCAGACGGAAAGAGAGAAGGTT
ACCTACGGGAAGGAATTGCCTGCGGAAAACCGGGTGTATCGCTGCATGTT
CGTGAAAAAATTACGCGCCGAAATGAAATGAGTGCAGACGGAAAGAGAGA
AGGTTACCTACGGGAAGGAATTGCCTGCGGAAAACCGGGTGTATCGCTGC
ATGTTCGTGAAAAAATTACGCGCCGAAATGAAATGA
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