mRNA_H-elongata_contig10654.538.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 270 bits (689), Expect = 1.930e-86 Identity = 138/303 (45.54%), Postives = 194/303 (64.03%), Query Frame = 1
Query: 25 MNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHG---VRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVM--RADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRM-----GQRCPH-----CPGWCVFLLKSYLEEMYEKSNENVES----DNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNKDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
MNK+GG T+K+ML W + Q +TVGLYDS +W G +A+ FL + L WGAY EGLRP G +R CKWFT+FRHP+ RLVSA+++C+ + D LCA + AD+ D++ FAEHW +FGLRQFA AFV P+ ++ +++ G P+ CPGW + LK YL++ ++ + S +G A + HLL+PV+ LL + YAAVG+LEQ++++L LFN +LGMPG DWP F +G KN D F + + + TD R++ +L LDLLLY++AVSVH QV +GL
Sbjct: 1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLR-ECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGW--YELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.710e-69 Identity = 114/292 (39.04%), Postives = 176/292 (60.27%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRM-GQRCPHCPGWCVFLLKSYLEEMYEKSNENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNKD-RLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
CW+ +HMNKSGG T++ M++ ++ E+ ++ L+D EW +G +YA F+ + T+G Y EGLR + R CKWFTVFRHPVSR+VSA+++CQ D LCAA V+ A ++D+ TFAEHW N+GLRQFA A + + V + + + C G + ++ + + + + GP + P++G+ L + L YAAVGI+E++D+++ LFN L + DW FQ G KN F+ + A K +K+F+ LD+LLY+ A+SVH++QVA G+
Sbjct: 52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRD-CKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQ-PESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.190e-58 Identity = 123/316 (38.92%), Postives = 165/316 (52.22%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFL-SYDFDLTW----GAYAEGLR------PHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMR--------SRMG---QRCPHCPGWCVFLLKSYLEEMYEKSNENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNKDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSV-----HKAQVALHG 873
CWI NH+ K+GG T+K +L ++ T YDS +WK G YA S W G Y E LR P R C+WFTVFRHPVSRLVSA+Y+C+ +D LCA+ + + +D+ TFA HW NF LRQFA FVS D V MG ++ PGW ++LK +L + V D P + ++ PV LLRDNYA VGILE +++TL LF+++L MPG+ W F+ G N D F + Q ++ ++D I + L LDL LY AV + H +A HG
Sbjct: 88 CWIFNHLQKAGGTTVKRLLFDSWGSESTT---YDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGW--YMLKLFLNDR-----SGVADDTSPEG---TRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQHG 390
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.630e-58 Identity = 113/293 (38.57%), Postives = 167/293 (57.00%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRMGQRCPHCPGWCVFLLKSYLEEMYEKSNENVESDNGPNRE--PDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKN-KDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
CW+ MNK+GG +I+ M+ + TVG + +++ G ++ L L WGAY EGLRP+ CKWFT+ RHP++RLVSAF +C +D LCA + + ++ DI+ FAEHW N G+ QFA AF + ++ + + P W + K Y E S + S N ++ + M +L+PVE LLR YAAVGILEQ+++++ LF+ +L +PG +W S +N D D+ A+ MTD +K+ L LD+LLYE A SVHKAQ++ +GL
Sbjct: 37 CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVKS-----PPW--YKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKAKNDLLVAS---MTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 196 bits (497), Expect = 8.970e-56 Identity = 111/302 (36.75%), Postives = 166/302 (54.97%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKF-----LSYDFDLTWGAYAEGLR-PHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRMGQRCPHCPGWCVFLLKSYLEEMYEKSN------ENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNKDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
CW+ H+ K GG T+K +L + +YDS WK G ++ KF L +++ G Y E LR V C++FT+FRHP++R+VSA+++C++ + D CA+ VM+A ++D+ TFA+HW NF LRQFA FV D V + LK YLE ++ E + + PDA + LL+P L+RD Y AVGILEQ+++TL LF+ +L MP ++W F G + D + + + ++ TDS +K++++LDLLLYE AV V Q HGL
Sbjct: 177 CWVFMHLQKCGGSTVKDLLE---DRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE---------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.880e-53 Identity = 118/313 (37.70%), Postives = 170/313 (54.31%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKF-LSYDFDLTW----GAYAEGLR-PHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIV---MRSRMGQRC-----PHCPGWCVFLLKSYLEEMYEKSN---------ENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNKDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
CW+ H+ K GG T+K+ML + +YDS++WK G + F + TW G Y E LR V C++FT+FRHP++R+VSA+++C++ D CA+ V+ A ++D+ TFA+HW NF +RQFA FV D V +R+ Q GW + LK YLE EK + VE D E A + LL+P L+R Y AVGILEQ+++TLHLF+ +L +PG+ W + F G + D R + K+ TDS +K++++LDLLLYE AV V Q +GL
Sbjct: 156 CWVFMHLQKCGGSTVKYMLRR---SYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGW--YQLKMYLERP-EKGDWGVPGQSEAMTVEHDAAATLE--APLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 184 bits (467), Expect = 8.280e-53 Identity = 107/293 (36.52%), Postives = 162/293 (55.29%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRMGQRCPHCPGWCVFLLKSYLE-EMYEKSNENVESDNGPNRE-PDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGV-KNKDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
CW+ H NK+GG T+K L + E + TV L S + G + L+ L G YAEGLR + CKWFT+ RHP++RL+SAFY+C D LCAAN+ + ++ DI+ FA+HW N+ L QFA V + + P W F K Y E + N + ++ + E + +L+PVE LLR NYAAVGILE + ++ LF+ +L +PG +W A L K+++++ ++ A MTD +++++ LDLLLYE+A S+H+ Q+ + L
Sbjct: 37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQG-CKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFAEEVD-----APAW--FKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIVEKKAMLAAA--MTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.390e-42 Identity = 99/294 (33.67%), Postives = 154/294 (52.38%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLL-KWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRMGQRCPHCPGWCVFLLKSYLEEMYEKSNENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNK---DRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
CWI HM+KSG + + +W +++ + +D+ +W+ G +A ++ + L G E LR H R CKW T+FRHP++RL+SA++ C DP+C + + FAE W NF +RQFA VSP V + QR +L+K YL +E +ES +LEPV+ LL YAAVGI ++ ++T+ LF+ +L M G+DW S++ LG+ + D +D + ++ + + RI L+LD+ LYE A+ V K QVA G+
Sbjct: 273 CWIFMHMDKSGASGARRVATERWRKDELV----FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERS-CKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPT----ESTGLVVFAELWGNFAMRQFALESVSPSAV-KEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLES--------------MLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 147 bits (372), Expect = 2.490e-39 Identity = 96/288 (33.33%), Postives = 148/288 (51.39%), Query Frame = 1
Query: 25 MNKSGGQTIKFMLLK-WIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHGVRPHCKWFTVFRHPVSRLVSAFYFCQNRTADPLCAANVMRADEIDIFTFAEHWANFGLRQFANAFVSPDIVMRSRMGQRCPHCPGWCVFLLKSYLEEMYEKSNENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQGLGVKNKDRL---FDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQVALHGL 876
M+KSG + + + W +++ + +D+ +W+ G +A ++ + L G E LR H R CKW T+FRHP++RL+SA+ C DP+C + + FAE W NF +RQFA A VSP V + QR +L+K YL +E + S LEPV+ LL YAAVGI ++ +T+ LF+ +L M G+DW S++ LG+ +D+ +D + ++ + + RI L+LD+ LYE AV V K QVA G+
Sbjct: 1 MDKSGASGARRVATEQWRKDELV----FDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRS-CKWITIFRHPIARLLSAYDHCLGAPKDPVCPPT----ESTGLAAFAELWGNFAMRQFALAAVSPSAV-KEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLGSK--------------LEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 5.450e-15 Identity = 89/306 (29.08%), Postives = 125/306 (40.85%), Query Frame = 1
Query: 7 CWILNHMNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTWGAYAEGLRPHG----VRPHCKWFTVFRHPVSRLVSAFYFCQNR-------------TADPLCAANVMRADEIDIFTFAE-HWANFGLRQFANAFVSPDIVMRSRMGQRCPH---CPGWCVFLLKSYLEEMYEKSNENVESDNGPNREPDAGMRHLLEPVELLLRDNYAAVGILEQYDSTLHLFNASLGMPGVDWPSAFQG-LGVKNKDRLFDRDIQQATKKIMTDSRIKEFLQLDLLLYEFAVSVHKAQ 858
C + +HM KSGG TIK L I +A S G +++ YAE +R G VR C++FT+ RHPV RLVSAF++C DPL A + + FA+ HW N +Q G CPH C E E + P + G+ +L+ VE +L Y AVGI+E +D ++ LFNA + P DW + G+ ++ L D +Q A + I + DLLLY FA+S+ K Q
Sbjct: 41 CTVFHHMVKSGGSTIKHNLH--ISSRAAGGPRPGSCVAGGGKRINSCKEAFNSSAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCGYADDPLPATD-------RLLEFAQQHWKNMAYKQMT-------------FGMYCPHGLIC--------------------EATEVETAPGLDEPHGL-DVLQKVEDIL-SGYTAVGIMEHWDLSMQLFNARVRSPVRDWNMTVRSNAGLPSE--LRDEVLQWAHDSPV----IHRLMATDLLLYSFALSIFKRQ 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10654.538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10654.538.1 >prot_H-elongata_contig10654.538.1 ID=prot_H-elongata_contig10654.538.1|Name=mRNA_H-elongata_contig10654.538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp MNKSGGQTIKFMLLKWIEEQAITVGLYDSSEWKNGTAYARKFLSYDFDLTback to top mRNA from alignment at H-elongata_contig10654:4058..5386+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10654.538.1 ID=mRNA_H-elongata_contig10654.538.1|Name=mRNA_H-elongata_contig10654.538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1329bp|location=Sequence derived from alignment at H-elongata_contig10654:4058..5386+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10654:4058..5386+ >mRNA_H-elongata_contig10654.538.1 ID=mRNA_H-elongata_contig10654.538.1|Name=mRNA_H-elongata_contig10654.538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig10654:4058..5386+ (Himanthalia elongata Himel1 dioecious)back to top |