mRNA_H-elongata_contig193521.5371.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193521.5371.1
Unique NamemRNA_H-elongata_contig193521.5371.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193521.5371.1 vs. uniprot
Match: A0A8K0K052_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K052_LADFU)

HSP 1 Score: 50.1 bits (118), Expect = 1.370e-5
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:    1 FVYLGSTISSVGDVGPEIKRRPGYAWNCFLKYSRAVYDNTYIAVAEKVRFLKAEVLKVMLYGSVTWI 201
            F YLGS ++S GD+  EI  R   A + F K  + V+ N  ++   KV   KA VL V+LY +  WI
Sbjct:   53 FSYLGSLVTSKGDMDTEINHRFQCAAHAFYKLRKRVFKNKDLSAKTKVAVFKAVVLSVLLYINECWI 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193521.5371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8K0K052_LADFU1.370e-540.30Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193521contigH-elongata_contig193521:87..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930102.7960908-CDS-H-elongata_contig193521:86..3381622930102.7960908-CDS-H-elongata_contig193521:86..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193521 87..338 +
1691679281.0135872-CDS-H-elongata_contig193521:86..3381691679281.0135872-CDS-H-elongata_contig193521:86..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193521 87..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193521.5371.1prot_H-elongata_contig193521.5371.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193521 87..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193521.5371.1

>prot_H-elongata_contig193521.5371.1 ID=prot_H-elongata_contig193521.5371.1|Name=mRNA_H-elongata_contig193521.5371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
FVYLGSTISSVGDVGPEIKRRPGYAWNCFLKYSRAVYDNTYIAVAEKVRF
LKAEVLKVMLYGSVTWILSHGDFDKVREAHRGIL
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mRNA from alignment at H-elongata_contig193521:87..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193521.5371.1 ID=mRNA_H-elongata_contig193521.5371.1|Name=mRNA_H-elongata_contig193521.5371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig193521:87..338+ (Himanthalia elongata Himel1 dioecious)
TTCGTGTATCTTGGAAGCACCATCAGCAGCGTTGGGGACGTCGGCCCTGA
GATCAAACGCCGTCCTGGCTACGCGTGGAACTGCTTCCTCAAGTACAGCA
GGGCGGTGTATGACAACACATACATCGCAGTGGCAGAAAAGGTCCGTTTC
TTGAAGGCGGAAGTACTCAAGGTCATGCTCTACGGCTCTGTGACCTGGAT
TCTTTCACATGGCGACTTCGACAAGGTGCGGGAAGCCCACCGCGGAATAC
TG
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Coding sequence (CDS) from alignment at H-elongata_contig193521:87..338+

>mRNA_H-elongata_contig193521.5371.1 ID=mRNA_H-elongata_contig193521.5371.1|Name=mRNA_H-elongata_contig193521.5371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig193521:87..338+ (Himanthalia elongata Himel1 dioecious)
TTCGTGTATCTTGGAAGCACCATCAGCAGCGTTGGGGACGTCGGCCCTGA
GATCAAACGCCGTCCTGGCTACGCGTGGAACTGCTTCCTCAAGTACAGCA
GGGCGGTGTATGACAACACATACATCGCAGTGGCAGAAAAGGTCCGTTTC
TTGAAGGCGGAAGTACTCAAGGTCATGCTCTACGGCTCTGTGACCTGGAT
TCTTTCACATGGCGACTTCGACAAGGTGCGGGAAGCCCACCGCGGAATAC
TGTTCGTGTATCTTGGAAGCACCATCAGCAGCGTTGGGGACGTCGGCCCT
GAGATCAAACGCCGTCCTGGCTACGCGTGGAACTGCTTCCTCAAGTACAG
CAGGGCGGTGTATGACAACACATACATCGCAGTGGCAGAAAAGGTCCGTT
TCTTGAAGGCGGAAGTACTCAAGGTCATGCTCTACGGCTCTGTGACCTGG
ATTCTTTCACATGGCGACTTCGACAAGGTGCGGGAAGCCCACCGCGGAAT
ACTG
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