mRNA_H-elongata_contig106533.537.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: D7FJZ0_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ0_ECTSI) HSP 1 Score: 179 bits (455), Expect = 1.980e-51 Identity = 89/116 (76.72%), Postives = 104/116 (89.66%), Query Frame = 1
Query: 112 EEPSSGVPVGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYRE 459
E SSGV VG SIFNL+KNVVGAGILAIPGGVTAFSQ+++A VP VAMIVALG +SGY FSLIGRVCAATGA+SYGDAW+KT+G++T+WLPTSSCT KTFFACM Y+IIIG+ + +
Sbjct: 59 ESSSSGVTVGRSIFNLIKNVVGAGILAIPGGVTAFSQSRAAVVPTVAMIVALGGMSGYCFSLIGRVCAATGASSYGDAWSKTIGEKTSWLPTSSCTAKTFFACMAYSIIIGDVFAD 174
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A836CMH1_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH1_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.410e-36 Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 136 VGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENY 453
VG SIFNLVKN+VG+GILA+PGGV AFS A+ A VPA +I+ LG LSGY FSLIGR CAAT A SYGDAWA TV +T W+P SS KTFF C+ Y+IIIG+ +
Sbjct: 29 VGGSIFNLVKNIVGSGILALPGGVAAFSHARGAVVPASVLILLLGLLSGYCFSLIGRACAATNARSYGDAWAATVEPKTVWMPLSSVVAKTFFTCLSYSIIIGDTF 134
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A6S9E4U8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E4U8_HETAK) HSP 1 Score: 127 bits (319), Expect = 1.460e-31 Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 79 SAAAATIPIPKEEPSSGVPVGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGE 447
+AAAA + +G P+ SIFNLVK++VGAG+LA+PGGV AFS A A A + A+G LS Y FSLIGRVCAA A +Y DAWAK++ +TAWLP +C FKT C++Y+IIIG+
Sbjct: 59 NAAAAAATTQSKVEDTGSPIPASIFNLVKSIVGAGVLALPGGVAAFSDAPGAMAAAAGLTGAMGLLSAYCFSLIGRVCAAYDAKTYFDAWAKSISPKTAWLPAFACNFKTLIGCILYSIIIGD 181
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A7S1Z4Z3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z3_TRICV) HSP 1 Score: 122 bits (305), Expect = 4.730e-30 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1
Query: 115 EPSSGVPVGTS-----IFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYRE 459
EP S V GTS IFNLVK++VGAG+L++P G+ +FS A +PA +I A+G++SGY FSLIGRVC+ T A SY DAW+K+VG ++W+P SCTFKT A + Y++I+ + ++
Sbjct: 1 EPVSSVGGGTSTIPNHIFNLVKSIVGAGVLSLPAGIASFSNAPGGLLPATVLIAAIGAISGYGFSLIGRVCSYTDADSYRDAWSKSVGDESSWIPAWSCTFKTLCAVLAYSMILADTFKS 120
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: B7GCU1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GCU1_PHATC) HSP 1 Score: 123 bits (308), Expect = 5.870e-30 Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 136 VGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYRE 459
V + IFNLVK +VG G+L++P G+ AF A SA VPA+A+I +G LSGY F++IGRVCA TGATSY DAW+++VG+ T+W+P S T KTF AC+ +++++ + +
Sbjct: 101 VASEIFNLVKAIVGVGVLSLPAGIAAFGDAPSALVPALALIAIIGVLSGYGFAIIGRVCAYTGATSYRDAWSRSVGEGTSWIPAWSTTLKTFLACLAFSMVLADTFSS 208
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A7S2R064_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R064_9STRA) HSP 1 Score: 122 bits (307), Expect = 7.630e-30 Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1
Query: 112 EEPSSGVPVGTS-------IFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGE 447
EE +S PVGT IFNLVK+VVGAG+L++P G+ AF A SA +PA +I G LSGY+FSL+GRVCA TGA SY +AW+KTVG+ T+ +P +SCTFKT A + Y++I+ +
Sbjct: 72 EEDASEAPVGTGTASMSNMIFNLVKSVVGAGVLSLPAGIGAFGNAPSAVLPATVLIAIFGGLSGYAFSLLGRVCAYTGALSYREAWSKTVGEETSIIPAASCTFKTSVAILAYSMILAD 190
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A7S2G3A0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3A0_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.110e-29 Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 1
Query: 136 VGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYRE 459
+ IFNLVK++VGAG+L++P G+ AFS A S +PAV +I A+G S Y FSLIGRVC+ TGATSY +AWA +VG++TA LPT SCTF T A + Y++I+ + ++
Sbjct: 29 MSAEIFNLVKSIVGAGVLSLPAGIAAFSNAPSGAIPAVGLIAAIGMFSAYGFSLIGRVCSYTGATSYREAWANSVGEKTASLPTVSCTFMTTCATLAYSMILADTFKS 136
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A4D9CTY7_9STRA (Aa_trans domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTY7_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.210e-29 Identity = 58/113 (51.33%), Postives = 82/113 (72.57%), Query Frame = 1
Query: 121 SSGVPVGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYRE 459
+ G V T+ FNL+KN++GAG+L++P GV AFS A VPAVA+ + +GSLS Y F+LI RVCA +YG+AW K+VGK+TAW+ ++CTFKTF AC ++III +++
Sbjct: 91 NKGSSVSTATFNLIKNILGAGVLSLPSGVGAFSSNPMALVPAVALTMGMGSLSAYCFTLIARVCALNKVETYGEAWEKSVGKKTAWMVPAACTFKTFCACTAFSIIIADSFSS 203
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A7S1YWB7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWB7_TRICV) HSP 1 Score: 115 bits (289), Expect = 1.300e-29 Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 1
Query: 148 IFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYREGSGGL 474
I NL+K+VVGAG+L++P G+ AF A SA +P+V +I A+G++S Y FSLIGRVCA TGA+SY +AW KTVG TA LP +S TF A + Y +I+ + +++ +GG+
Sbjct: 5 ILNLIKSVVGAGVLSLPAGIAAFGDAPSALLPSVVLITAIGTISAYMFSLIGRVCAMTGASSYAEAWEKTVGPGTAILPAASSTFSCLAANLAYGMILADTFKDLAGGI 113
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Match: A0A7S2JRD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRD2_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.430e-29 Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 136 VGTSIFNLVKNVVGAGILAIPGGVTAFSQAKSATVPAVAMIVALGSLSGYSFSLIGRVCAATGATSYGDAWAKTVGKRTAWLPTSSCTFKTFFACMIYAIIIGENYR 456
+ IFNLVKN+VGAG+L++P G+ +F A SA +PA A+I +G+ SGY FS IGRVCA ATSY DAW+KTVG+ T+W+P + CTFKT A + Y++I+ + ++
Sbjct: 89 IPNEIFNLVKNIVGAGVLSLPAGIASFGNAPSAIIPATALIAVIGAASGYCFSAIGRVCAMENATSYRDAWSKTVGESTSWIPAAICTFKTSSANLAYSMILADTFK 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106533.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106533.537.1 >prot_H-elongata_contig106533.537.1 ID=prot_H-elongata_contig106533.537.1|Name=mRNA_H-elongata_contig106533.537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp SHVDFFRDHNRGHNGAVMVAAEVSGGSAAAATIPIPKEEPSSGVPVGTSIback to top mRNA from alignment at H-elongata_contig106533:76..1963+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106533.537.1 ID=mRNA_H-elongata_contig106533.537.1|Name=mRNA_H-elongata_contig106533.537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1888bp|location=Sequence derived from alignment at H-elongata_contig106533:76..1963+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106533:76..1963+ >mRNA_H-elongata_contig106533.537.1 ID=mRNA_H-elongata_contig106533.537.1|Name=mRNA_H-elongata_contig106533.537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig106533:76..1963+ (Himanthalia elongata Himel1 dioecious)back to top |