prot_H-elongata_contig193400.5366.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig193400.5366.1
Unique Nameprot_H-elongata_contig193400.5366.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
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BLAST of mRNA_H-elongata_contig193400.5366.1 vs. uniprot
Match: D8LMH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.880e-19
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    1 LSAESIAVRCYTILFCLLVVFAEMEWTSTVREMFALHSWIPRGVLYS 47
            LS ES+AVRCY ILFC+L++ AE+EWT+TVREMF LHSWIPRGV+YS
Sbjct:   47 LSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYS 93
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BLAST of mRNA_H-elongata_contig193400.5366.1 vs. uniprot
Match: A0A6H5JBP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.940e-19
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    1 LSAESIAVRCYTILFCLLVVFAEMEWTSTVREMFALHSWIPRGVLYS 47
            LS ES+AVRCY ILFC+L++ AE+EWT+TVREMF LHSWIPRGV+YS
Sbjct:  102 LSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYS 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193400.5366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMH6_ECTSI1.880e-1976.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBP3_9PHAE5.940e-1976.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 5..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193400contigH-elongata_contig193400:996..1142 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193400.5366.1mRNA_H-elongata_contig193400.5366.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig193400 996..1142 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig193400.5366.1 ID=prot_H-elongata_contig193400.5366.1|Name=mRNA_H-elongata_contig193400.5366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
LSAESIAVRCYTILFCLLVVFAEMEWTSTVREMFALHSWIPRGVLYSL*
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