mRNA_H-elongata_contig193307.5360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193307.5360.1
Unique NamemRNA_H-elongata_contig193307.5360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193307.5360.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 4.240e-46
Identity = 74/127 (58.27%), Postives = 92/127 (72.44%), Query Frame = 1 
Query:    1 EQLRNGQDLVDMRPNRLAKFDISGEVGYWKVERRAPPGAKRNLKLSLQNGFDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAIMFADEGNIYAARTKEELAGAAATTRKKIGTFKVDLATLPPIV 381
            +Q +NG D +  R N+LA+F+ SGEVGYWK+ RR  PGA +        G D LVLD+PEQG R++LIVSYEIP++ GRYHPS+IMFA +G IY A  KE+L G AA  RKKIG+F VDL TL P+V
Sbjct:   38 DQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMV 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193307.5360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI4.240e-4658.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193307contigH-elongata_contig193307:2..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004500.1
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.511216-CDS-H-elongata_contig193307:1..1661622930101.511216-CDS-H-elongata_contig193307:1..166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193307 2..166 -
1691679280.5180786-CDS-H-elongata_contig193307:1..1661691679280.5180786-CDS-H-elongata_contig193307:1..166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193307 2..166 -
1622930101.5249872-CDS-H-elongata_contig193307:317..5331622930101.5249872-CDS-H-elongata_contig193307:317..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193307 318..533 -
1691679280.525732-CDS-H-elongata_contig193307:317..5331691679280.525732-CDS-H-elongata_contig193307:317..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193307 318..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193307.5360.1prot_H-elongata_contig193307.5360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193307 2..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193307.5360.1

>prot_H-elongata_contig193307.5360.1 ID=prot_H-elongata_contig193307.5360.1|Name=mRNA_H-elongata_contig193307.5360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
EQLRNGQDLVDMRPNRLAKFDISGEVGYWKVERRAPPGAKRNLKLSLQNG
FDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAIMFADEGNIYAARTKE
ELAGAAATTRKKIGTFKVDLATLPPIV
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mRNA from alignment at H-elongata_contig193307:2..533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193307.5360.1 ID=mRNA_H-elongata_contig193307.5360.1|Name=mRNA_H-elongata_contig193307.5360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=532bp|location=Sequence derived from alignment at H-elongata_contig193307:2..533- (Himanthalia elongata Himel1 dioecious)
GAACAGCTTCGCAACGGGCAGGACTTGGTGGACATGCGCCCGAACCGATT
GGCCAAGTTTGATATCTCGGGCGAGGTTGGGTACTGGAAGGTAGAGCGAC
GCGCTCCTCCCGGTGCGAAGCGCAACTTGAAGCTGTCCCTTCAGAACGGC
TTTGACGTCCTGGTGCTGGACGTTCCGGAGCAAGGAGACCGGAAGGACCT
CATCGTCTCCTACGAGGTTTGTTATTTGGTCATGTCTGTCGAACGCCTTC
TGGGTTGGTAAGAAAATAGTAGCCTCTCCGACCCCCCCGCCGCCTCCCTG
CACTTCGATCAGGAATTCATCAACCATGGAGTGCTAAATCATAACACCAT
ACGCGCGGCGTTCGCAGATCCCCGTCACGCGAGGGCGGTATCACCCGTCG
GCGATCATGTTCGCCGACGAGGGGAACATATACGCAGCCAGGACCAAGGA
AGAGCTTGCTGGAGCCGCGGCGACGACTCGCAAAAAGATCGGGACTTTCA
AGGTGGACCTGGCAACGCTTCCTCCAATCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig193307:2..533-

>mRNA_H-elongata_contig193307.5360.1 ID=mRNA_H-elongata_contig193307.5360.1|Name=mRNA_H-elongata_contig193307.5360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig193307:2..533- (Himanthalia elongata Himel1 dioecious)
GAACAGCTTCGCAACGGGCAGGACTTGGTGGACATGCGCCCGAACCGATT
GGCCAAGTTTGATATCTCGGGCGAGGTTGGGTACTGGAAGGTAGAGCGAC
GCGCTCCTCCCGGTGCGAAGCGCAACTTGAAGCTGTCCCTTCAGAACGGC
TTTGACGTCCTGGTGCTGGACGTTCCGGAGCAAGGAGACCGGAAGGACCT
CATCGTCTCCTACGAGGAACAGCTTCGCAACGGGCAGGACTTGGTGGACA
TGCGCCCGAACCGATTGGCCAAGTTTGATATCTCGGGCGAGGTTGGGTAC
TGGAAGGTAGAGCGACGCGCTCCTCCCGGTGCGAAGCGCAACTTGAAGCT
GTCCCTTCAGAACGGCTTTGACGTCCTGGTGCTGGACGTTCCGGAGCAAG
GAGACCGGAAGGACCTCATCGTCTCCTACGAGATCCCCGTCACGCGAGGG
CGGTATCACCCGTCGGCGATCATGTTCGCCGACGAGGGGAACATATACGC
AGCCAGGACCAAGGAAGAGCTTGCTGGAGCCGCGGCGACGACTCGCAAAA
AGATCGGGACTTTCAAGGTGGACCTGGCAACGCTTCCTCCAATCGTCATC
CCCGTCACGCGAGGGCGGTATCACCCGTCGGCGATCATGTTCGCCGACGA
GGGGAACATATACGCAGCCAGGACCAAGGAAGAGCTTGCTGGAGCCGCGG
CGACGACTCGCAAAAAGATCGGGACTTTCAAGGTGGACCTGGCAACGCTT
CCTCCAATCGTC
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