mRNA_H-elongata_contig193279.5358.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193279.5358.1
Unique NamemRNA_H-elongata_contig193279.5358.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193279.5358.1 vs. uniprot
Match: A0A6H5KR89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR89_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-19
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 EKETFFKSKGIDGDVDSFDWDGLRRNTLEIESLQREAVDRYWRRQG 138
            EKETFFKSKGI+GDVDSFDWD LRRNT EIE LQREAV++YWR +G
Sbjct:   37 EKETFFKSKGIEGDVDSFDWDELRRNTDEIEQLQREAVEQYWRDKG 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193279.5358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR89_9PHAE1.940e-1982.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193279contigH-elongata_contig193279:602..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.3280675-CDS-H-elongata_contig193279:601..7391622930101.3280675-CDS-H-elongata_contig193279:601..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193279 602..739 +
1691679280.4334095-CDS-H-elongata_contig193279:601..7391691679280.4334095-CDS-H-elongata_contig193279:601..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193279 602..739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193279.5358.1prot_H-elongata_contig193279.5358.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193279 602..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193279.5358.1

>prot_H-elongata_contig193279.5358.1 ID=prot_H-elongata_contig193279.5358.1|Name=mRNA_H-elongata_contig193279.5358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
EKETFFKSKGIDGDVDSFDWDGLRRNTLEIESLQREAVDRYWRRQG
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mRNA from alignment at H-elongata_contig193279:602..739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193279.5358.1 ID=mRNA_H-elongata_contig193279.5358.1|Name=mRNA_H-elongata_contig193279.5358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig193279:602..739+ (Himanthalia elongata Himel1 dioecious)
GAAAAAGAGACGTTCTTCAAGAGCAAGGGGATCGACGGGGACGTGGACAG
CTTCGACTGGGATGGGCTCAGGCGCAACACTCTGGAGATCGAAAGCCTTC
AAAGGGAAGCCGTCGACCGCTACTGGAGGCGACAAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig193279:602..739+

>mRNA_H-elongata_contig193279.5358.1 ID=mRNA_H-elongata_contig193279.5358.1|Name=mRNA_H-elongata_contig193279.5358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig193279:602..739+ (Himanthalia elongata Himel1 dioecious)
GAAAAAGAGACGTTCTTCAAGAGCAAGGGGATCGACGGGGACGTGGACAG
CTTCGACTGGGATGGGCTCAGGCGCAACACTCTGGAGATCGAAAGCCTTC
AAAGGGAAGCCGTCGACCGCTACTGGAGGCGACAAGGTGAAAAAGAGACG
TTCTTCAAGAGCAAGGGGATCGACGGGGACGTGGACAGCTTCGACTGGGA
TGGGCTCAGGCGCAACACTCTGGAGATCGAAAGCCTTCAAAGGGAAGCCG
TCGACCGCTACTGGAGGCGACAAGGT
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