mRNA_H-elongata_contig193254.5357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193254.5357.1
Unique NamemRNA_H-elongata_contig193254.5357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7S3USU6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USU6_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 1.480e-15
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+AT  DDETWKVWSVPNC+L++SGEGH +W+S V FHP GTML
Sbjct:    3 ILATVSDDETWKVWSVPNCDLVMSGEGHGSWLSAVDFHPSGTML 46
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7L0MNU5_9PSIT (SPG16 protein (Fragment) n=1 Tax=Amazona guildingii TaxID=175529 RepID=A0A7L0MNU5_9PSIT)

HSP 1 Score: 67.4 bits (163), Expect = 1.590e-12
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+ TGGDD  WK+W++P+  LI++GEGH +W+SG  FHP GT L
Sbjct:    1 IVVTGGDDHLWKMWALPDGNLIMTGEGHTDWLSGCCFHPSGTQL 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7S3U472_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U472_9SPIT)

HSP 1 Score: 71.6 bits (174), Expect = 1.650e-12
Identity = 25/44 (56.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            ++AT  DD TWK+WS+P  +L++SGEGH++WVSG+AFHP G+++
Sbjct:  250 VVATACDDHTWKMWSMPEGQLVLSGEGHKDWVSGIAFHPRGSLV 293
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A093I073_STRCA (Sperm-associated antigen 16 protein (Fragment) n=2 Tax=Struthio camelus australis TaxID=441894 RepID=A0A093I073_STRCA)

HSP 1 Score: 67.4 bits (163), Expect = 6.600e-12
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+ATG DD  WK+W  PN  +I++GEGH +W+SG  FHP GT L
Sbjct:    1 IVATGSDDRLWKIWGFPNGNIIMTGEGHTDWLSGCCFHPSGTQL 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7K8MXA6_CASCA (SPG16 protein (Fragment) n=1 Tax=Casuarius casuarius TaxID=8787 RepID=A0A7K8MXA6_CASCA)

HSP 1 Score: 66.2 bits (160), Expect = 1.200e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+ATG DD  WK+W+ PN  +I++GEGH +W+SG  FHP GT +
Sbjct:    1 IVATGSDDRLWKMWAFPNGNIIMTGEGHTDWLSGCCFHPSGTQM 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A851XJY3_EOLRO (SPG16 protein (Fragment) n=1 Tax=Eolophus roseicapilla TaxID=176039 RepID=A0A851XJY3_EOLRO)

HSP 1 Score: 64.3 bits (155), Expect = 6.690e-11
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+ TG DD  WK+W++P+  +I++GEGH +W+SG  FHP GT L
Sbjct:    1 IVVTGSDDHLWKMWALPDGNIIMTGEGHTDWLSGCCFHPSGTQL 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7K9V2L1_ANSSE (SPG16 protein (Fragment) n=3 Tax=Galloanserae TaxID=1549675 RepID=A0A7K9V2L1_ANSSE)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            ++ TG DD  WK+W++P+  +I++GEGH +W+SG  FHP GT L
Sbjct:    1 VVVTGSDDRLWKMWALPDGNIIMTGEGHTDWLSGCCFHPSGTQL 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A851EDG4_9CORV (SPG16 protein (Fragment) n=1 Tax=Dryoscopus gambensis TaxID=85069 RepID=A0A851EDG4_9CORV)

HSP 1 Score: 62.4 bits (150), Expect = 1.450e-10
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+ TGGDD  WK W  P+  +++SGEGH +W+SG  F P GT L
Sbjct:    1 IVVTGGDDRLWKTWGFPDGNILMSGEGHTDWLSGCCFRPSGTQL 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7L3TQK0_URIAL (SPG16 protein (Fragment) n=1 Tax=Uria aalge TaxID=13746 RepID=A0A7L3TQK0_URIAL)

HSP 1 Score: 62.0 bits (149), Expect = 2.050e-10
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            I+ TG DD  WK+W++P  ++I++GEGH +W+SG  FH  GT L
Sbjct:    1 IVLTGSDDHQWKMWALPRGDIIVTGEGHTDWLSGCCFHASGTQL 44
[Close]
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Match: A0A7L0JNA6_CHATO (SPG16 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L0JNA6_CHATO)

HSP 1 Score: 62.0 bits (149), Expect = 2.050e-10
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   10 IIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTML 141
            ++ TG DD  WK+W++P+  +I++GEGH +W+SG  FHP G  L
Sbjct:    1 VVVTGSDDRLWKMWALPDGNIIMTGEGHTDWLSGCCFHPSGNQL 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193254.5357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3USU6_HETAK1.480e-1572.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7L0MNU5_9PSIT1.590e-1256.82SPG16 protein (Fragment) n=1 Tax=Amazona guildingi... [more]
A0A7S3U472_9SPIT1.650e-1256.82Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A093I073_STRCA6.600e-1256.82Sperm-associated antigen 16 protein (Fragment) n=2... [more]
A0A7K8MXA6_CASCA1.200e-1154.55SPG16 protein (Fragment) n=1 Tax=Casuarius casuari... [more]
A0A851XJY3_EOLRO6.690e-1152.27SPG16 protein (Fragment) n=1 Tax=Eolophus roseicap... [more]
A0A7K9V2L1_ANSSE1.430e-1050.00SPG16 protein (Fragment) n=3 Tax=Galloanserae TaxI... [more]
A0A851EDG4_9CORV1.450e-1052.27SPG16 protein (Fragment) n=1 Tax=Dryoscopus gamben... [more]
A0A7L3TQK0_URIAL2.050e-1050.00SPG16 protein (Fragment) n=1 Tax=Uria aalge TaxID=... [more]
A0A7L0JNA6_CHATO2.050e-1047.73SPG16 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193254contigH-elongata_contig193254:205..878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue7.4e-09
Seed eggNOG ortholog44056.XP_009043096.1
Preferred nameSPAG16
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
GOsGO:0000003,GO:0000226,GO:0001539,GO:0001578,GO:0003006,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0035082,GO:0040011,GO:0042221,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050896,GO:0051012,GO:0051179,GO:0051592,GO:0051674,GO:0051704,GO:0051716,GO:0060271,GO:0060285,GO:0060294,GO:0070887,GO:0070925,GO:0071241,GO:0071248,GO:0071277,GO:0071840,GO:0097014,GO:0097231,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1990716
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.2679462-CDS-H-elongata_contig193254:204..3931622930101.2679462-CDS-H-elongata_contig193254:204..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193254 205..393 +
1691679280.403682-CDS-H-elongata_contig193254:204..3931691679280.403682-CDS-H-elongata_contig193254:204..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193254 205..393 +
1622930101.280224-CDS-H-elongata_contig193254:767..8781622930101.280224-CDS-H-elongata_contig193254:767..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193254 768..878 +
1691679280.4250345-CDS-H-elongata_contig193254:767..8781691679280.4250345-CDS-H-elongata_contig193254:767..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193254 768..878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193254.5357.1prot_H-elongata_contig193254.5357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193254 205..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193254.5357.1

>prot_H-elongata_contig193254.5357.1 ID=prot_H-elongata_contig193254.5357.1|Name=mRNA_H-elongata_contig193254.5357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
TQAIIATGGDDETWKVWSVPNCELIISGEGHRNWVSGVAFHPHGTMLATG
AGDTTVKLWDFREARCAATFTDHTQAVWGVSFHHTGYFLASCSMYVTCG*
back to top

mRNA from alignment at H-elongata_contig193254:205..878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193254.5357.1 ID=mRNA_H-elongata_contig193254.5357.1|Name=mRNA_H-elongata_contig193254.5357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig193254:205..878+ (Himanthalia elongata Himel1 dioecious)
ACACAGGCCATAATTGCAACAGGGGGCGACGATGAGACTTGGAAAGTTTG
GTCTGTACCGAACTGTGAACTCATCATAAGCGGAGAGGGACACCGTAACT
GGGTATCGGGGGTAGCATTCCATCCACACGGGACAATGCTTGCAACGGGG
GCTGGTGATACTACTGTTAAGCTGTGGGATTTCCGAGAGGTTCGTCCGTT
CGTTTGTCTAAGTAGGTGGAGGTTGTCATTGTAGACTTGCACTACGCATT
TTGACTGAAAGGAGCCCATCGGCGGATGCGGACGAGTGAGAAGTTAATAG
AATTTGGATTGGGCGCCCCTCGATAAAAGATATAAGTGAAGTATTGAATG
GGACGTGCGCTCAAGCAGTATTCTCCTTGGCAGCTGATGGGACGCAAAAT
ATATTTTTCCTGCCAGGAAACACATCAAACTTGCGCCCGCTCGCCAATGA
CGTAGCAGAGCCAACATCGACATGAAGCCACTTTGCTTCTGTAATTTACA
ACTATTAATAGTCCATCTCAAGTGACTGCCAGCTGTTTTTGCCTCGCATG
GATCCCACGGCAGGCTAGATGCGCGGCTACGTTCACCGATCATACACAAG
CCGTCTGGGGGGTATCTTTCCATCACACAGGATACTTCCTCGCCTCCTGT
TCAATGTACGTTACGTGTGGATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig193254:205..878+

>mRNA_H-elongata_contig193254.5357.1 ID=mRNA_H-elongata_contig193254.5357.1|Name=mRNA_H-elongata_contig193254.5357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig193254:205..878+ (Himanthalia elongata Himel1 dioecious)
ACACAGGCCATAATTGCAACAGGGGGCGACGATGAGACTTGGAAAGTTTG
GTCTGTACCGAACTGTGAACTCATCATAAGCGGAGAGGGACACCGTAACT
GGGTATCGGGGGTAGCATTCCATCCACACGGGACAATGCTTGCAACGGGG
GCTGGTGATACTACTGTTAAGCTGTGGGATTTCCGAGAGACACAGGCCAT
AATTGCAACAGGGGGCGACGATGAGACTTGGAAAGTTTGGTCTGTACCGA
ACTGTGAACTCATCATAAGCGGAGAGGGACACCGTAACTGGGTATCGGGG
GTAGCATTCCATCCACACGGGACAATGCTTGCAACGGGGGCTGGTGATAC
TACTGTTAAGCTGTGGGATTTCCGAGAGGCTAGATGCGCGGCTACGTTCA
CCGATCATACACAAGCCGTCTGGGGGGTATCTTTCCATCACACAGGATAC
TTCCTCGCCTCCTGTTCAATGTACGTTACGTGTGGATGAGCTAGATGCGC
GGCTACGTTCACCGATCATACACAAGCCGTCTGGGGGGTATCTTTCCATC
ACACAGGATACTTCCTCGCCTCCTGTTCAATGTACGTTACGTGTGGATGA
back to top