mRNA_H-elongata_contig19317.5353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19317.5353.1
Unique NamemRNA_H-elongata_contig19317.5353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19317.5353.1 vs. uniprot
Match: A0A6H5L563_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L563_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.860e-43
Identity = 104/230 (45.22%), Postives = 133/230 (57.83%), Query Frame = 2 
Query:   98 GEWREEEVTAVVDQVVLMLGACPFPERLDMPWFSSTLAGLGSRFHRPAVRAALFISKPATRTDAVLKAVEEGG------------VSAAVALDELRPVVDPDDGWCYAGLANQATLETVFLWIDRHGTYGNLFDSRHFMAMASTLVSAGRARGLVASCLANERRKEACAVCRMHYRAKAASTGENPEAAGIKGDG-------GEGGLRSVRQTDEFLKRFAEEFGVELLP 730
            GE   E+V AVV+QVV++LGACPFPER+++ WF STLA LG RFH  AV+ AL +S PA RT AVL+ + + G            V+  V LDELRPV        + G ANQA LE VF+WID    +  L  +RHF  M STLV AGRARG+VA+ LA  +R+EA ++C+MHY A A       E               G GG      +   L+RFA+EF ++L P
Sbjct:  156 GERPHEDVNAVVEQVVMLLGACPFPERMNLKWFYSTLADLGPRFHAQAVQVALGVSGPAARTAAVLELLGQPGNGXXXXXXXXXXVALNVVLDELRPVAAGGGSGVWGGTANQAILEAVFVWIDERRGWAELRGTRHFHTMVSTLVRAGRARGMVAASLAAGKRQEAYSLCQMHYAAAAXXXVNGIEHGXXXXXXXXXXXXXGTGGW-----SRNSLERFAKEFDLKLPP 380
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BLAST of mRNA_H-elongata_contig19317.5353.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 8.100e-39
Identity = 98/220 (44.55%), Postives = 124/220 (56.36%), Query Frame = 2 
Query:  113 EEVTAVVDQVVLMLGACPFPERLDMPWFSSTLAGLGSRFHRPAVRAALFISKPATRTDAVLKAVEEGG------------VSAAVALDELRPVVDPDDGWCYAGLANQATLETVFLWIDRHGTYGNLFDSRHFMAMASTLVSAGRARGLVASCLANERRKEACAVCRMHYRAKAA--STGENPEAAGIKGDGGEGGLRSVRQTDEFLKRFAEEFGVELLP 730
            E+V AVV+QVVL+LGACPFPER+++ WF STLA LG RFH  AV+ AL +  P  RT AVL  +E+ G            V+  V LDELRPV             NQ  LE +F+WID    +  L  +RHF AM STLV AGRARG+VA+ LA  +R+EA  +C+MHY   AA  +TG                      +   L+RFA+EFG+ L P
Sbjct: 2831 EDVNAVVEQVVLLLGACPFPERMNLKWFYSTLADLGPRFHAQAVQIALGVPGPVPRTAAVLDLLEQPGNGXXXXXXXXXXVALNVVLDELRPVAAXXXXXXXXXXXNQVILEAIFVWIDERRGWAELRGTRHFDAMVSTLVRAGRARGMVAASLAAGKRQEAYGLCQMHYATAAAVVATGFEHGRRXXXXXXXXXXXXXXXXSRNSLERFAKEFGLNLPP 3050
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19317.5353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L563_9PHAE1.860e-4345.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSU3_ECTSI8.100e-3944.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19317contigH-elongata_contig19317:2217..5638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1213
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19317.5353.1prot_H-elongata_contig19317.5353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19317 2730..5173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.8861785-UTR-H-elongata_contig19317:2216..23551622930100.8861785-UTR-H-elongata_contig19317:2216..2355Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19317 2217..2355 +
1691679280.229138-UTR-H-elongata_contig19317:2216..23551691679280.229138-UTR-H-elongata_contig19317:2216..2355Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19317 2217..2355 +
1622930100.9019005-UTR-H-elongata_contig19317:2720..27291622930100.9019005-UTR-H-elongata_contig19317:2720..2729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19317 2721..2729 +
1691679280.241531-UTR-H-elongata_contig19317:2720..27291691679280.241531-UTR-H-elongata_contig19317:2720..2729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19317 2721..2729 +
1622930100.97086-UTR-H-elongata_contig19317:5173..56381622930100.97086-UTR-H-elongata_contig19317:5173..5638Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19317 5174..5638 +
1691679280.282484-UTR-H-elongata_contig19317:5173..56381691679280.282484-UTR-H-elongata_contig19317:5173..5638Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19317 5174..5638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.9176297-CDS-H-elongata_contig19317:2729..29811622930100.9176297-CDS-H-elongata_contig19317:2729..2981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19317 2730..2981 +
1691679280.2496705-CDS-H-elongata_contig19317:2729..29811691679280.2496705-CDS-H-elongata_contig19317:2729..2981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19317 2730..2981 +
1622930100.932516-CDS-H-elongata_contig19317:4123..41911622930100.932516-CDS-H-elongata_contig19317:4123..4191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19317 4124..4191 +
1691679280.2671282-CDS-H-elongata_contig19317:4123..41911691679280.2671282-CDS-H-elongata_contig19317:4123..4191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19317 4124..4191 +
1622930100.9499352-CDS-H-elongata_contig19317:4893..51731622930100.9499352-CDS-H-elongata_contig19317:4893..5173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19317 4894..5173 +
1691679280.2752926-CDS-H-elongata_contig19317:4893..51731691679280.2752926-CDS-H-elongata_contig19317:4893..5173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19317 4894..5173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19317.5353.1

>prot_H-elongata_contig19317.5353.1 ID=prot_H-elongata_contig19317.5353.1|Name=mRNA_H-elongata_contig19317.5353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MLGACPFPERLDMPWFSSTLAGLGSRFHRPAVRAALFISKPATRTDAVLK
AVEEGGVSAAVALDELRPVVDPDDGWCYAGLANQATLETVFLWIDRHGTY
GNLFDSRHFMAMASTLVSAGRARGLVASCLANERRKEACAVCRMHYRAKA
ASTGENPEAAGIKGDGGEGGLRSVRQTDEFLKRFAEEFGVELLPSCPDG*
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mRNA from alignment at H-elongata_contig19317:2217..5638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19317.5353.1 ID=mRNA_H-elongata_contig19317.5353.1|Name=mRNA_H-elongata_contig19317.5353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3422bp|location=Sequence derived from alignment at H-elongata_contig19317:2217..5638+ (Himanthalia elongata Himel1 dioecious)
GGTCAGCTGTAGCGATGCCGGTGCGACGGTTAGGGGTATCAGGCGTTCCG
CCACGGAGGTGGGGGTCGGTGCTGGGGCGCGCAGCGGTGGAGCGAAGGGC
GAGTGGCGGGAGGAGGAAGTCACGGCGGTTGTTGACCAGGTACGTGGAGG
CTAGAAGAGCTTGGACGATCGTCGGCCAGATTCAGTAATCTCCATCTTAA
CGGAGGAGGCGATGTGTGCGATGGTTCGTTGTATTATATCCTTCAGGGTC
ATATTTAGCGGGTCTTGATGGATTTTTAAATTGTACTGTCGATTGTACAC
CGTTTTCGCTAAAGGCAACATCTACCCAGGCGCCTGAAGTGGTCGCTCGC
GTTCGATCTCAAGCGGTGACCGTCCTAGACTCTAGACTCAATACCAACAC
ACTCTACTGCACGCCTCGTTCAACGGCTTATTCAGTAACCCCCAGTGAGC
TTCCGAGGGCATGCAGTTACTTCGAAAAGTCCTGCTTCTGTATCCATCTC
GCAGGTAGTACTGATGCTCGGAGCTTGCCCTTTCCCAGAGCGCCTGGATA
TGCCATGGTTCTCCTCCACCCTGGCAGGCCTCGGCTCGCGCTTCCATAGG
CCAGCCGTCAGGGCGGCGTTGTTCATCTCCAAGCCCGCGACCCGCACCGA
CGCCGTGTTAAAGGCGGTTGAGGAGGGCGGCGTATCTGCCGCGGTGGCGC
TTGACGAACTCCGCCCGGTTGTTGACCCCGATGATGGTTGGTGTTATGCG
GGGCTAGCGAATCAGGTGCGGAACCGCCGACGGTGAACTAAAGCGATCAC
GTATCGTTGATGATGACGATTTATATCTTCTCAGCCGTATGATTGAGTCA
GCCATACCGGTAGGTGTCTCAAATCCCAATCCCGCGTTTTGGTTCCGTAA
AGATACGGATGGATGCTATAGCGGGTGGCATCCTGGTGTGACATCACCCC
GCTACGAAATAGCGACAACAAGCAATGCTTGGTAATGCGGTGGCCAGGTG
CCAGTATCGCCCCGAGTCTGGGTGTGTAAAAGAGGGTAAGGTCTTTTCAT
AGAAAAGGAGAGGGCAGGATGGGTGTCAGATTGTATTCCGCGTGCCGTTT
TCGGAGCGGAGGCGTTTGCTATCCGGCGGTGTCTCGACGTCAAGCGAGCT
GGGATATCAGTCATCGGAAGCGAGGCACTTGTTTCTATAAAAGAGGAGGA
AGGCAGGAAAGTCTACGCCAAGAACAAACATAGTATGTTTATTTAAGCAG
GCTAACTACGAGAACGCAGGCTCAGATACTTTCGTCCAAAACACCACATT
CCCTAAAATGAAAAAAAAAAAAAAGCTTGGCCTTAATCTAATAATAGAGG
CGTAAATAAAAATGAAATATCACGTTAAATTGTATTTCAAGAGATTTTNN
NNNNNNNNTTTAAACAGGCTAAAAACGAGAACGAAGGCTCAAATACTTTC
GCCAAAAACCCCAAAATCCCAAAAAAAAAAAAAAAAAAAAAAAAAGCTTG
GCCTTAATCTAATAATAGAGGCGTTTTTACTATTGTTCTATCGCGCTAAA
TTGTATTGCAAGAGTTTTTCGCAACTCACTTCTTACTCTAACAAAGGAAA
GGAAAGGGCTTTCGGGGCCATTATTCCGAGATATAATCCCCTAATCTTTT
ATGGAATAGATAGGGAAGGAAAATATCTTGAAATAATTACAACGACCGTA
TTTGACATGCGTCATGTCTTGGGAAACCTATAAAAAGTTAACGATCGAAT
TTTCTTTTTTGGGGAAAGTGATGTTTTGGAGTTGAACCTGATTTGAATAT
ATAGCCAAAACCTGCTTTCTCAGGAAACCGTGTTAGCATTCAGAAATCGC
TGAGTCGTTTAATGAATTGGACCCGTCCGTTGGCCATCGGTAACCAACCG
TAAGCAGGCCACCCTGGAGACGGTTTTCCTATGGATTGACAGGCATGGGA
CGTACGGGAACCTCTTCGACAGCAGGTGTGACGGTGGGGGCTCCTCTAAG
CGGTGGATTGTGGCGTGTTAAGAAAAAACTAAGAACGCTTTTGTTTCATT
ACCAATGAAAACCCGGCTATATAGAAATCCTCCGTCCCCCCTTGCTATTT
GTGCAGGCAGCACCGAAATACTTCTTGATGCGCAATCTCTCCATATCTGT
ACCGTTTGCTTTTTTTGTGTGTGTATACTAGTTGTCGAGGAAATTGAGCA
AGTTTGCTCTCTGGCGTTATCTGTACATTTATTTATAGATATAGTTTACT
ACCGTCAGCCACCAACCTTGCCTATTGTGCTAGAGGCGTGGCATGTCCCG
GGGAGGCCGTTACCCAAATCTAGAAATAATTAGAGTGCACATTCGCAACA
AAGCGCACGAGAAGGAAAAACACGGTCGCTGAGTTTGTATTCCGTGGTAA
ATTATATCAAGCGATAAATTATTATTAATAATGCGATACTCTTATTTGTA
TTGCTGTATTGCTTGGTCGTTAAAAACAAAGTATCTTGCTTACTTACGTA
TGGTGCCCCCCTTAATTCCAACCTCCCCTCACGGGTTGTACGACGAACTT
CTTTGGAAATCTTTGGGACAACGAACGGACTCTGGCCATCCCACAAAACG
TGCATCCTGGGGGGAAGGAGGGACCATTTTTTTACTAATCGTAATGCTGT
GTTGTACCCTGTGTCACGTTATGCCAGGCACTTTATGGCGATGGCCTCGA
CCCTCGTGAGCGCCGGCCGCGCCCGCGGATTGGTCGCCTCTTGCCTGGCC
AACGAAAGACGTAAGGAAGCCTGCGCCGTTTGTCGAATGCATTACCGCGC
AAAAGCGGCCTCCACCGGAGAGAATCCCGAGGCAGCCGGAATTAAAGGGG
ATGGCGGAGAAGGGGGCCTGAGATCCGTCCGCCAGACGGACGAATTTCTC
AAACGGTTTGCGGAAGAGTTTGGGGTGGAGCTGCTGCCATCGTGCCCGGA
TGGATAGCGTCTTACTCTTCCTTCCCTCTTGTCTTGTACTGCAGTATTAT
TTTTTTTTGCCGCGTGGTGTAGCGAGAAGGAGTATCTATCGCGGTTTTTC
TGTAAGCAAGCAAGTTCACATCGCTGACGGAGGGGCGTGCAACTTGACAT
GTTTCCCCGGTCGACGGTAAGCCCCGCGCAGTAAGGTTTTCCCCTAGTCA
TGGCGATTGCTAATATTGCTATATACCGTATAGTAAATATCCTTATTATA
TAACTATATAGCTCAAGGGTGGCCATATGAAACCCCCAAACTATGATAGT
ACGAACTGGTATAAACTCTTTATGGACAGCGAAATATATTTCTGGTGTTT
TTAGAATTGGAGGGAGACAGTGCTGGCTGGTGGGGTAGCTGGTGTCTGTC
GGGGCCAAAAGCTGACGACACGGACTTGGGACGTCTTTATCCCGCAACAC
ACAAGCCTCCCTCGCTCTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig19317:2217..5638+

>mRNA_H-elongata_contig19317.5353.1 ID=mRNA_H-elongata_contig19317.5353.1|Name=mRNA_H-elongata_contig19317.5353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig19317:2217..5638+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGGAGCTTGCCCTTTCCCAGAGCGCCTGGATATGCCATGGTTCTC
CTCCACCCTGGCAGGCCTCGGCTCGCGCTTCCATAGGCCAGCCGTCAGGG
CGGCGTTGTTCATCTCCAAGCCCGCGACCCGCACCGACGCCGTGTTAAAG
GCGGTTGAGGAGGGCGGCGTATCTGCCGCGGTGGCGCTTGACGAACTCCG
CCCGGTTGTTGACCCCGATGATGGTTGGTGTTATGCGGGGCTAGCGAATC
AGATGCTCGGAGCTTGCCCTTTCCCAGAGCGCCTGGATATGCCATGGTTC
TCCTCCACCCTGGCAGGCCTCGGCTCGCGCTTCCATAGGCCAGCCGTCAG
GGCGGCGTTGTTCATCTCCAAGCCCGCGACCCGCACCGACGCCGTGTTAA
AGGCGGTTGAGGAGGGCGGCGTATCTGCCGCGGTGGCGCTTGACGAACTC
CGCCCGGTTGTTGACCCCGATGATGGTTGGTGTTATGCGGGGCTAGCGAA
TCAGGCCACCCTGGAGACGGTTTTCCTATGGATTGACAGGCATGGGACGT
ACGGGAACCTCTTCGACAGCAGGCCACCCTGGAGACGGTTTTCCTATGGA
TTGACAGGCATGGGACGTACGGGAACCTCTTCGACAGCAGGCACTTTATG
GCGATGGCCTCGACCCTCGTGAGCGCCGGCCGCGCCCGCGGATTGGTCGC
CTCTTGCCTGGCCAACGAAAGACGTAAGGAAGCCTGCGCCGTTTGTCGAA
TGCATTACCGCGCAAAAGCGGCCTCCACCGGAGAGAATCCCGAGGCAGCC
GGAATTAAAGGGGATGGCGGAGAAGGGGGCCTGAGATCCGTCCGCCAGAC
GGACGAATTTCTCAAACGGTTTGCGGAAGAGTTTGGGGTGGAGCTGCTGC
CATCGTGCCCGGATGGATAGGCACTTTATGGCGATGGCCTCGACCCTCGT
GAGCGCCGGCCGCGCCCGCGGATTGGTCGCCTCTTGCCTGGCCAACGAAA
GACGTAAGGAAGCCTGCGCCGTTTGTCGAATGCATTACCGCGCAAAAGCG
GCCTCCACCGGAGAGAATCCCGAGGCAGCCGGAATTAAAGGGGATGGCGG
AGAAGGGGGCCTGAGATCCGTCCGCCAGACGGACGAATTTCTCAAACGGT
TTGCGGAAGAGTTTGGGGTGGAGCTGCTGCCATCGTGCCCGGATGGATAG
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