mRNA_H-elongata_contig193066.5349.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193066.5349.1
Unique NamemRNA_H-elongata_contig193066.5349.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: D7G5M6_ECTSI (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M6_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.060e-27
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            GDLTV+LE+V+ VE A+ HI   GS HTET+VTED  VAK FLE VDSACVFHNASTR+SDGYRFGLGAEV
Sbjct:  502 GDLTVSLEIVDSVEAALDHIQRFGSSHTETIVTEDQDVAKMFLETVDSACVFHNASTRFSDGYRFGLGAEV 572
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BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A7S3FDV9_9VIRI (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FDV9_9VIRI)

HSP 1 Score: 113 bits (282), Expect = 2.220e-27
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            GD   T+E+V GVE+AI H+H HGSGH+E V+TED+AVA+R+L  VD+ACVFHNASTR++DGYRFGLGAEV
Sbjct:  641 GDNRCTVEIVSGVEEAIAHVHQHGSGHSELVITEDEAVAERWLNGVDAACVFHNASTRFADGYRFGLGAEV 711
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BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A7I8VPM7_9ANNE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VPM7_9ANNE)

HSP 1 Score: 111 bits (278), Expect = 7.690e-27
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            G L  T+EVVE V+DAI HIH HGS HT+T++TED+ VA  FL+++DSACVFHNASTR+SDGYRFGLGAEV
Sbjct:  621 GCLECTIEVVEDVDDAIAHIHKHGSSHTDTIITEDNEVAGHFLKSLDSACVFHNASTRFSDGYRFGLGAEV 691
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BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A6H5JBC7_9PHAE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.740e-27
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 DLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            DLTV+LE+V+ VE A+ HI   GS HTET+VTED  VAK FLE VDSACVFHNASTR+SDGYRFGLGAEV
Sbjct:  720 DLTVSLEIVDSVEAALDHIQMFGSSHTETIVTEDQDVAKMFLETVDSACVFHNASTRFSDGYRFGLGAEV 789
[Close]
BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A1V9YA96_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA96_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.430e-26
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            G L +TLEVV G++ AI HI+AH SGHTE +VTED A A+RFL AVDSACVFHNASTR++DG+RFGLGAEV
Sbjct:  623 GALALTLEVVSGLDGAIAHINAHSSGHTEAIVTEDAAAAERFLAAVDSACVFHNASTRFADGFRFGLGAEV 693
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BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A2P6TY18_CHLSO (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TY18_CHLSO)

HSP 1 Score: 109 bits (272), Expect = 1.730e-26
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   16 TLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            T+E+V G++ AI HIH HGSGHTET++TED A A  FL  VDSACVFHNASTR+SDGYRFGLGAEV
Sbjct:  314 TVELVSGLDQAIDHIHTHGSGHTETIITEDQAAADDFLRRVDSACVFHNASTRFSDGYRFGLGAEV 379
[Close]
BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A0G4IMH3_PLABS (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMH3_PLABS)

HSP 1 Score: 110 bits (275), Expect = 1.950e-26
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 DLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            DL ++LE+V  V+DAI H+H +GSGHTET+VTED  VA++FL  VDSAC+FHNASTR+SDG+RFGLGAEV
Sbjct:  622 DLAMSLEIVSDVDDAIAHVHKYGSGHTETIVTEDGDVAEQFLRQVDSACIFHNASTRFSDGFRFGLGAEV 691
[Close]
BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: I0YPZ9_COCSC (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YPZ9_COCSC)

HSP 1 Score: 110 bits (275), Expect = 1.960e-26
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            G L +TLE+V  +++AI HIHAHGSGHTE ++TED A A+ FL  VDSACVFHNASTR++DG+RFGLGAEV
Sbjct:  616 GSLALTLELVSSMDEAISHIHAHGSGHTEAIITEDKASAEEFLRKVDSACVFHNASTRFADGFRFGLGAEV 686
[Close]
BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: E1Z8M1_CHLVA (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8M1_CHLVA)

HSP 1 Score: 108 bits (270), Expect = 2.650e-26
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    7 LTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            L VT+E+V G+ +AI HIH HGSGHTE +VTED A A  FL  VDSACVFHNASTR+SDGYRFGLGAEV
Sbjct:  289 LDVTVELVGGLGEAIDHIHTHGSGHTECIVTEDQAAADDFLRRVDSACVFHNASTRFSDGYRFGLGAEV 357
[Close]
BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Match: A0A8J9S9H7_9CHLO (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S9H7_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 2.680e-26
Identity = 47/71 (66.20%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSACVFHNASTRYSDGYRFGLGAEV 213
            G+L++TLE+V  +++AI+HIH +GSGHTE ++TED+A A+ FL  VDSACVFHNASTR++DG+RFGLGAEV
Sbjct:  638 GNLSLTLELVSSMDEAINHIHTYGSGHTEAIITEDEATAEEFLRKVDSACVFHNASTRFADGFRFGLGAEV 708
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193066.5349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5M6_ECTSI1.060e-2776.06Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A7S3FDV9_9VIRI2.220e-2770.42Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=P... [more]
A0A7I8VPM7_9ANNE7.690e-2771.83Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=D... [more]
A0A6H5JBC7_9PHAE7.740e-2775.71Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A1V9YA96_9STRA1.430e-2673.24Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=A... [more]
A0A2P6TY18_CHLSO1.730e-2674.24Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Chl... [more]
A0A0G4IMH3_PLABS1.950e-2670.00Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=P... [more]
I0YPZ9_COCSC1.960e-2669.01Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=C... [more]
E1Z8M1_CHLVA2.650e-2673.91Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Chl... [more]
A0A8J9S9H7_9CHLO2.680e-2666.20Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193066contigH-elongata_contig193066:615..854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7G5M6
Preferred nameALDH18A1
KEGG rclassRC00002,RC00043,RC00684
KEGG koko:K12657
KEGG ReactionR00239,R03313
KEGG Pathwayko00330,ko01100,ko01110,ko01230,map00330,map01100,map01110,map01230
KEGG ModuleM00015
GOsGO:0000003,GO:0000052,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004349,GO:0004350,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006592,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009266,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010035,GO:0010154,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016772,GO:0016774,GO:0016903,GO:0017084,GO:0018130,GO:0019202,GO:0019240,GO:0019752,GO:0019866,GO:0022414,GO:0022622,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042538,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0048229,GO:0048316,GO:0048364,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0055044,GO:0055114,GO:0061458,GO:0071704,GO:0099402,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700
EggNOG free text desc.glutamate-5-semialdehyde dehydrogenase activity
EggNOG OGsCOG0014@1,COG0263@1,KOG1154@2759,KOG4165@2759
EC1.2.1.41,2.7.2.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.3937757-CDS-H-elongata_contig193066:614..8541622930100.3937757-CDS-H-elongata_contig193066:614..854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193066 615..854 -
1691679280.054353-CDS-H-elongata_contig193066:614..8541691679280.054353-CDS-H-elongata_contig193066:614..854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193066 615..854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193066.5349.1prot_H-elongata_contig193066.5349.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193066 615..854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193066.5349.1

>prot_H-elongata_contig193066.5349.1 ID=prot_H-elongata_contig193066.5349.1|Name=mRNA_H-elongata_contig193066.5349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
GDLTVTLEVVEGVEDAIHHIHAHGSGHTETVVTEDDAVAKRFLEAVDSAC
VFHNASTRYSDGYRFGLGAEVRTRHTSDG*
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mRNA from alignment at H-elongata_contig193066:615..854-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193066.5349.1 ID=mRNA_H-elongata_contig193066.5349.1|Name=mRNA_H-elongata_contig193066.5349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig193066:615..854- (Himanthalia elongata Himel1 dioecious)
GGAGACCTGACGGTGACGCTCGAGGTCGTGGAGGGCGTCGAGGATGCCAT
CCACCACATCCACGCGCATGGCTCGGGCCACACGGAGACCGTGGTCACGG
AAGACGATGCTGTGGCGAAGCGCTTCCTGGAGGCGGTGGACAGCGCCTGC
GTCTTCCACAACGCCTCGACGCGTTACTCGGACGGGTACCGATTCGGTCT
GGGGGCAGAGGTGCGAACGCGGCACACCTCCGACGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig193066:615..854-

>mRNA_H-elongata_contig193066.5349.1 ID=mRNA_H-elongata_contig193066.5349.1|Name=mRNA_H-elongata_contig193066.5349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig193066:615..854- (Himanthalia elongata Himel1 dioecious)
GGAGACCTGACGGTGACGCTCGAGGTCGTGGAGGGCGTCGAGGATGCCAT
CCACCACATCCACGCGCATGGCTCGGGCCACACGGAGACCGTGGTCACGG
AAGACGATGCTGTGGCGAAGCGCTTCCTGGAGGCGGTGGACAGCGCCTGC
GTCTTCCACAACGCCTCGACGCGTTACTCGGACGGGTACCGATTCGGTCT
GGGGGCAGAGGTGCGAACGCGGCACACCTCCGACGGTTGAGGAGACCTGA
CGGTGACGCTCGAGGTCGTGGAGGGCGTCGAGGATGCCATCCACCACATC
CACGCGCATGGCTCGGGCCACACGGAGACCGTGGTCACGGAAGACGATGC
TGTGGCGAAGCGCTTCCTGGAGGCGGTGGACAGCGCCTGCGTCTTCCACA
ACGCCTCGACGCGTTACTCGGACGGGTACCGATTCGGTCTGGGGGCAGAG
GTGCGAACGCGGCACACCTCCGACGGTTGA
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