mRNA_H-elongata_contig193044.5347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193044.5347.1
Unique NamemRNA_H-elongata_contig193044.5347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193044.5347.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.360e-7
Identity = 19/35 (54.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 KDCLWITQLVFIIMKLDKQLDWRWGVIVVPTWVVI 108
            KDC+W+ QLVF+I+KLD  +DW W ++ +PTW+V+
Sbjct:  294 KDCIWMLQLVFLIIKLDGDVDWNWWLVFLPTWIVL 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193044.5347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K446_9PHAE2.360e-754.29J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193044contigH-elongata_contig193044:817..924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.3244667-CDS-H-elongata_contig193044:816..9241622930100.3244667-CDS-H-elongata_contig193044:816..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193044 817..924 +
1691679280.027897-CDS-H-elongata_contig193044:816..9241691679280.027897-CDS-H-elongata_contig193044:816..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193044 817..924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193044.5347.1prot_H-elongata_contig193044.5347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193044 817..924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193044.5347.1

>prot_H-elongata_contig193044.5347.1 ID=prot_H-elongata_contig193044.5347.1|Name=mRNA_H-elongata_contig193044.5347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MKDCLWITQLVFIIMKLDKQLDWRWGVIVVPTWVVI
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mRNA from alignment at H-elongata_contig193044:817..924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193044.5347.1 ID=mRNA_H-elongata_contig193044.5347.1|Name=mRNA_H-elongata_contig193044.5347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=108bp|location=Sequence derived from alignment at H-elongata_contig193044:817..924+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGATTGCCTTTGGATCACCCAGCTGGTATTTATAATTATGAAGCT
CGATAAACAGCTCGATTGGAGGTGGGGAGTAATCGTCGTCCCTACGTGGG
TCGTCATA
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Coding sequence (CDS) from alignment at H-elongata_contig193044:817..924+

>mRNA_H-elongata_contig193044.5347.1 ID=mRNA_H-elongata_contig193044.5347.1|Name=mRNA_H-elongata_contig193044.5347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig193044:817..924+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGATTGCCTTTGGATCACCCAGCTGGTATTTATAATTATGAAGCT
CGATAAACAGCTCGATTGGAGGTGGGGAGTAATCGTCGTCCCTACGTGGG
TCGTCATAATGAAGGATTGCCTTTGGATCACCCAGCTGGTATTTATAATT
ATGAAGCTCGATAAACAGCTCGATTGGAGGTGGGGAGTAATCGTCGTCCC
TACGTGGGTCGTCATA
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