mRNA_H-elongata_contig193037.5346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193037.5346.1
Unique NamemRNA_H-elongata_contig193037.5346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: D7FIB4_ECTSI (Hemolysin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.430e-22
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYIN 162
            +MR+RRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDE EDDD REEEHYIN
Sbjct:  425 EMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFREEEHYIN 477
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A6H5JI81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI81_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.530e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    7 MRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYIN 162
            MR+RRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDE EDDD REEEHYIN
Sbjct:  587 MRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFREEEHYIN 638
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A836CE63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE63_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.690e-17
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYI 159
            +MRKRRLHMAIVVDEYGGTAG+VTLEDI+EEVVGEIYDE EDDD   EE+YI
Sbjct:  332 EMRKRRLHMAIVVDEYGGTAGIVTLEDIIEEVVGEIYDE-EDDDYTVEENYI 382
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A7S0VP60_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VP60_9CRYP)

HSP 1 Score: 77.0 bits (188), Expect = 5.760e-17
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYI 159
            +MR+RR+HMAIVVDEYGGTAG+VTLEDILEEV+GEIYDE + D+L +EE  I
Sbjct:    7 EMRRRRIHMAIVVDEYGGTAGIVTLEDILEEVIGEIYDEDDIDELVKEESSI 58
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A7R9U4U4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4U4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.300e-16
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYI 159
            +MR+RRLHMAIVVDEYGGTAG+VTLEDILEEVVGEIYDE ++ + REEE  I
Sbjct:  447 EMRRRRLHMAIVVDEYGGTAGLVTLEDILEEVVGEIYDEEDEQESREEEDMI 498
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A7S1TRQ1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRQ1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYI 159
            +MR+RRLHMA+VVDEYGGTAG+VTLEDILEEVVGEIYDE ++ + R+EE  I
Sbjct:  440 EMRRRRLHMAVVVDEYGGTAGLVTLEDILEEVVGEIYDEEDEQESRDEEDMI 491
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A7S1NE71_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NE71_9EUGL)

HSP 1 Score: 72.4 bits (176), Expect = 2.340e-15
Identity = 34/39 (87.18%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDE 120
            QMRKRRLH+A+VVDEYGGT+GVVTLED+LEE+VGEIYDE
Sbjct:    9 QMRKRRLHLALVVDEYGGTSGVVTLEDLLEEIVGEIYDE 47
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BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: R7QJ18_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ18_CHOCR)

HSP 1 Score: 77.0 bits (188), Expect = 3.760e-15
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYI 159
            +MRKRRLHMAIVVDEYGGTAG+VTLEDILEEVVGEIYDE  DDD   E  +I
Sbjct:  279 EMRKRRLHMAIVVDEYGGTAGLVTLEDILEEVVGEIYDE--DDDYEAEAQFI 328
[Close]
BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A7S1HDC6_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HDC6_HEMAN)

HSP 1 Score: 77.0 bits (188), Expect = 3.820e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEEHYI 159
            +MR+RR+HMAIVVDEYGGTAG+VTLEDILEEV+GEIYDE + D+L +EE  I
Sbjct:  481 EMRRRRIHMAIVVDEYGGTAGIVTLEDILEEVIGEIYDEDDIDELVKEESSI 532
[Close]
BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Match: A0A7S2FGG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGG7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.890e-15
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    4 QMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDE 120
            +MRKRRLHMAIVVDEYGGTAG+VTLEDILEEVVGEIYDE
Sbjct:   36 EMRKRRLHMAIVVDEYGGTAGLVTLEDILEEVVGEIYDE 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193037.5346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIB4_ECTSI3.430e-2292.45Hemolysin-related protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5JI81_9PHAE6.530e-2294.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CE63_9STRA4.690e-1784.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0VP60_9CRYP5.760e-1775.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7R9U4U4_9STRA4.300e-1678.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TRQ1_9STRA1.500e-1575.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1NE71_9EUGL2.340e-1587.18Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
R7QJ18_CHOCR3.760e-1580.77Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1HDC6_HEMAN3.820e-1575.00Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S2FGG7_9STRA4.890e-1594.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193037contigH-elongata_contig193037:453..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7FIB4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.2800772-CDS-H-elongata_contig193037:452..6141622930100.2800772-CDS-H-elongata_contig193037:452..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193037 453..614 -
1691679280.0174124-CDS-H-elongata_contig193037:452..6141691679280.0174124-CDS-H-elongata_contig193037:452..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193037 453..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193037.5346.1prot_H-elongata_contig193037.5346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193037 453..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193037.5346.1

>prot_H-elongata_contig193037.5346.1 ID=prot_H-elongata_contig193037.5346.1|Name=mRNA_H-elongata_contig193037.5346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MQMRKRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDETEDDDLREEE
HYIN
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mRNA from alignment at H-elongata_contig193037:453..614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193037.5346.1 ID=mRNA_H-elongata_contig193037.5346.1|Name=mRNA_H-elongata_contig193037.5346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig193037:453..614- (Himanthalia elongata Himel1 dioecious)
ATGCAGATGCGCAAACGGCGTCTGCACATGGCGATCGTGGTGGACGAGTA
CGGGGGCACGGCCGGGGTGGTGACCCTCGAGGACATCCTGGAAGAAGTGG
TCGGGGAGATCTACGATGAGACCGAAGACGATGACCTGCGTGAGGAGGAG
CACTACATCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig193037:453..614-

>mRNA_H-elongata_contig193037.5346.1 ID=mRNA_H-elongata_contig193037.5346.1|Name=mRNA_H-elongata_contig193037.5346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig193037:453..614- (Himanthalia elongata Himel1 dioecious)
ATGCAGATGCGCAAACGGCGTCTGCACATGGCGATCGTGGTGGACGAGTA
CGGGGGCACGGCCGGGGTGGTGACCCTCGAGGACATCCTGGAAGAAGTGG
TCGGGGAGATCTACGATGAGACCGAAGACGATGACCTGCGTGAGGAGGAG
CACTACATCAACATGCAGATGCGCAAACGGCGTCTGCACATGGCGATCGT
GGTGGACGAGTACGGGGGCACGGCCGGGGTGGTGACCCTCGAGGACATCC
TGGAAGAAGTGGTCGGGGAGATCTACGATGAGACCGAAGACGATGACCTG
CGTGAGGAGGAGCACTACATCAAC
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