mRNA_H-elongata_contig19303.5344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19303.5344.1
Unique NamemRNA_H-elongata_contig19303.5344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19303.5344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19303contigH-elongata_contig19303:1107..2048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19303.5344.1prot_H-elongata_contig19303.5344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19303 1322..1921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.0429673-UTR-H-elongata_contig19303:1106..13211622930100.0429673-UTR-H-elongata_contig19303:1106..1321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19303 1107..1321 +
1691679279.9266744-UTR-H-elongata_contig19303:1106..13211691679279.9266744-UTR-H-elongata_contig19303:1106..1321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19303 1107..1321 +
1622930100.0761123-UTR-H-elongata_contig19303:1921..20481622930100.0761123-UTR-H-elongata_contig19303:1921..2048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19303 1922..2048 +
1691679279.9494681-UTR-H-elongata_contig19303:1921..20481691679279.9494681-UTR-H-elongata_contig19303:1921..2048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19303 1922..2048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.0603013-CDS-H-elongata_contig19303:1321..19211622930100.0603013-CDS-H-elongata_contig19303:1321..1921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19303 1322..1921 +
1691679279.9362035-CDS-H-elongata_contig19303:1321..19211691679279.9362035-CDS-H-elongata_contig19303:1321..1921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19303 1322..1921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19303.5344.1

>prot_H-elongata_contig19303.5344.1 ID=prot_H-elongata_contig19303.5344.1|Name=mRNA_H-elongata_contig19303.5344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MFRPGCPPPSSHTHTHQPNKLLLVGCHHCLRGACLSTLRNIQAPPTTDER
HENRQWECTFPHRGSVIQHRPTGPYMPKDLRIAREGPPPTPLAKNYRSLS
LFLKKRELTSVLLVLPSQKDSKKSAHRKTTAHSVILTVTGTYRVRSTRWY
GHHWFWNFYRRNYFYRFFAPVLSCRAKIRRSTFGNNLFVETIFRNLTPY*
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mRNA from alignment at H-elongata_contig19303:1107..2048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19303.5344.1 ID=mRNA_H-elongata_contig19303.5344.1|Name=mRNA_H-elongata_contig19303.5344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig19303:1107..2048+ (Himanthalia elongata Himel1 dioecious)
ACGGGGAAACGTTTGGGCCGGCCGGTCGGAGAAAGGAGCTGATTGGAAGA
CGGAGATAACTCGTCCCTCGAACGCATAAGCGCCTTGAGATAGATGTAAT
TACCCTTCAATGCAGCAAAGAACGCGGGAGGATTGGGAAAAATGGGTTCA
CGCCTCCCCTAAAACCAAAAGGTACCATGCTACACGTGGTTTGATTTGAC
GCGCGACCCTGTGTCATGTTTCGTCCTGGATGCCCCCCCCCATCTTCACA
CACACACACACACCAGCCCAACAAACTGCTATTAGTAGGCTGCCACCATT
GCCTTCGCGGTGCCTGTCTGTCTACTCTACGAAATATTCAAGCACCACCG
ACCACCGACGAGAGGCACGAAAATAGACAGTGGGAATGCACTTTTCCCCA
CCGCGGTTCCGTGATACAGCATCGCCCCACGGGGCCATATATGCCGAAAG
ATTTAAGGATCGCGCGAGAGGGACCTCCCCCGACCCCGCTGGCGAAAAAC
TACCGCTCGCTCTCTCTTTTTCTCAAGAAACGAGAATTGACATCCGTGCT
ACTTGTGCTTCCGTCCCAAAAAGATTCGAAAAAAAGTGCGCACCGTAAAA
CTACAGCACACAGTGTCATCCTGACGGTCACTGGTACATACCGGGTACGA
AGTACACGGTGGTATGGCCACCATTGGTTTTGGAATTTTTACCGTCGAAA
TTATTTTTACCGCTTTTTCGCCCCCGTCCTGTCCTGTCGTGCTAAAATAC
GGCGCTCTACTTTCGGAAACAATCTCTTCGTGGAAACTATTTTTCGAAAT
TTGACGCCTTACTGAGGAGGGAAAAGGGTGCGATCATCATATAATCAATC
CAACGAACGAACAAGCGAACAAACGTTGACACGTGCGCGCGCCCCCCTCA
GCGCAATGTCCCCCCCCTCTCTCTCTCCCCCTCAAAAGAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig19303:1107..2048+

>mRNA_H-elongata_contig19303.5344.1 ID=mRNA_H-elongata_contig19303.5344.1|Name=mRNA_H-elongata_contig19303.5344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig19303:1107..2048+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCGTCCTGGATGCCCCCCCCCATCTTCACACACACACACACACCA
GCCCAACAAACTGCTATTAGTAGGCTGCCACCATTGCCTTCGCGGTGCCT
GTCTGTCTACTCTACGAAATATTCAAGCACCACCGACCACCGACGAGAGG
CACGAAAATAGACAGTGGGAATGCACTTTTCCCCACCGCGGTTCCGTGAT
ACAGCATCGCCCCACGGGGCCATATATGCCGAAAGATTTAAGGATCGCGC
GAGAGGGACCTCCCCCGACCCCGCTGGCGAAAAACTACCGCTCGCTCTCT
CTTTTTCTCAAGAAACGAGAATTGACATCCGTGCTACTTGTGCTTCCGTC
CCAAAAAGATTCGAAAAAAAGTGCGCACCGTAAAACTACAGCACACAGTG
TCATCCTGACGGTCACTGGTACATACCGGGTACGAAGTACACGGTGGTAT
GGCCACCATTGGTTTTGGAATTTTTACCGTCGAAATTATTTTTACCGCTT
TTTCGCCCCCGTCCTGTCCTGTCGTGCTAAAATACGGCGCTCTACTTTCG
GAAACAATCTCTTCGTGGAAACTATTTTTCGAAATTTGACGCCTTACTGA
ATGTTTCGTCCTGGATGCCCCCCCCCATCTTCACACACACACACACACCA
GCCCAACAAACTGCTATTAGTAGGCTGCCACCATTGCCTTCGCGGTGCCT
GTCTGTCTACTCTACGAAATATTCAAGCACCACCGACCACCGACGAGAGG
CACGAAAATAGACAGTGGGAATGCACTTTTCCCCACCGCGGTTCCGTGAT
ACAGCATCGCCCCACGGGGCCATATATGCCGAAAGATTTAAGGATCGCGC
GAGAGGGACCTCCCCCGACCCCGCTGGCGAAAAACTACCGCTCGCTCTCT
CTTTTTCTCAAGAAACGAGAATTGACATCCGTGCTACTTGTGCTTCCGTC
CCAAAAAGATTCGAAAAAAAGTGCGCACCGTAAAACTACAGCACACAGTG
TCATCCTGACGGTCACTGGTACATACCGGGTACGAAGTACACGGTGGTAT
GGCCACCATTGGTTTTGGAATTTTTACCGTCGAAATTATTTTTACCGCTT
TTTCGCCCCCGTCCTGTCCTGTCGTGCTAAAATACGGCGCTCTACTTTCG
GAAACAATCTCTTCGTGGAAACTATTTTTCGAAATTTGACGCCTTACTGA
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