mRNA_H-elongata_contig1930.5343.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1930.5343.1
Unique NamemRNA_H-elongata_contig1930.5343.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A6H5KFX0_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.940e-39
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    4 AVYVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQV 249
            AVYVD V  GAVCCRIEPS+ PGGHD LYIMTLGVLATWRRR IG+ LLRRVL +L  HPSV+EVYLHVQT+N+EAV FY+V
Sbjct:   32 AVYVDNVAVGAVCCRIEPSKSPGGHDSLYIMTLGVLATWRRRNIGTHLLRRVLESLPRHPSVKEVYLHVQTNNDEAVGFYKV 113          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: D8LRT1_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.690e-37
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    7 VYVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQV 249
            VYVD V  GAVCCRIEP + PGGHD LYIMTLGVLATWRRR IG+ LLRRVL +L  HPSV+EVYLHVQT+N+EAV FY+V
Sbjct:   88 VYVDNVAVGAVCCRIEPPKSPGGHDSLYIMTLGVLATWRRRNIGTHLLRRVLESLPRHPSVKEVYLHVQTNNDEAVGFYKV 168          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A7S2CI27_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI27_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.240e-36
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   10 YVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKLHREG 345
            Y +G V G++C R+EPS  PG   +LYIMTLGVLA +RRR IG +LL R L  LE  P + E+YLHVQ SN+ A++FY   GF+  E I NYYKRI+PPDC++L K L R+ 
Sbjct:   63 YWNGFVVGSICSRLEPSTGPG-PKKLYIMTLGVLAAYRRRSIGKKLLMRTLEALESRPDITEIYLHVQVSNDTAIQFYHSCGFETKEMIPNYYKRIEPPDCYLLSKCLVRKN 173          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A6U4V3F5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4V3F5_HEMAN)

HSP 1 Score: 130 bits (328), Expect = 3.770e-36
Identity = 58/113 (51.33%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    4 AVYVDGVVSGAVCCRIE-PSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKLHR 339
            A Y   ++ GA+CCR+E P+    G  RLYIMT+GVLA +R  G+G+++L + L++ E  PSV E YLHVQTSN +A++FY+  GF++  TI NYYK+I+PPDCH+L K   R
Sbjct:   80 AYYSTDILVGAICCRLEKPAAGGAGGTRLYIMTIGVLAPYRSCGVGTEMLEQTLSDAEKDPSVSEAYLHVQTSNTDAMEFYKRFGFEVTSTIKNYYKKIEPPDCHVLTKTFAR 192          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: K3WS71_GLOUD (N-acetyltransferase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS71_GLOUD)

HSP 1 Score: 128 bits (321), Expect = 1.590e-35
Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   10 YVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKL 333
            YV  +V+GA+CCR+EP E      R YIMTLGVL  +R+  IGS LL+ ++ N      V+ +YLHVQTSN  A++FY   GF+I ETI NYYKRI+PPDC+IL KKL
Sbjct:   50 YVGSIVAGAICCRLEPLETHSVFQRTYIMTLGVLEVYRQCQIGSMLLQNII-NQSIRDGVDHIYLHVQTSNSVAIQFYHKFGFEITETIRNYYKRIEPPDCYILLKKL 156          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A329SCP1_9STRA (N-acetyltransferase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCP1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.410e-35
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   13 VDGVVSGAVCCRIEP-SEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKL 333
            V G   GA+CCR EP  E P G +R YIMTLGVL ++RR  IGS+LL  V+A    H SV +VYLHVQTSN  A++FY+ HGF+  + + NYYKRIDPPDC++LR++L
Sbjct:   83 VRGFAVGAICCRREPVKEGPVGLERTYIMTLGVLESYRRARIGSRLLEGVIAQ-SIHDSVVQVYLHVQTSNTAALRFYRSHGFEATQILRNYYKRIDPPDCYVLRRQL 189          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A7S2USK3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.240e-34
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   10 YVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKL 333
            Y +G V GAVC R E S    G   +YIMTLGVLA +R R IGSQLL RVL+  E +  ++ +YLHVQTSN EA+ FY+  GF+  + I NYYKRI+PPDC+IL+K+L
Sbjct:   54 YWNGFVVGAVCSRFEASS--NGRRNVYIMTLGVLAAYRGRSIGSQLLERVLSACEAYDDLDHIYLHVQTSNTEALNFYRCFGFEQTDIIRNYYKRIEPPDCYILKKRL 159          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A9S6R5_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S6R5_PHYPA)

HSP 1 Score: 125 bits (313), Expect = 3.560e-34
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   10 YVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKL 333
            Y + +  G++ CR+E  +  G   RLYIMTLG+LA +RR GIGS+LL+  L   +  P++EEVYLHVQ +N+EA++FY+  GF+I +TI NYYKRI+PP C++L K L
Sbjct:   53 YYNDICVGSIACRLEKKD--GSKMRLYIMTLGILAPYRRLGIGSKLLQNALELCKDDPNIEEVYLHVQINNDEAIEFYRQFGFEITDTIKNYYKRIEPPHCYVLSKSL 158          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A176VWJ3_MARPO (N-acetyltransferase domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VWJ3_MARPO)

HSP 1 Score: 125 bits (313), Expect = 3.660e-34
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    4 AVYVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKL 333
            A Y D  V G++ CR+E  E  G   RLYIMTLGVLA +RR GIGS+LL++ L   E  P + EVYLHVQT+NE A++FY+   F+I ETI NYYK I+PPDC++L K L
Sbjct:   52 AYYADLCV-GSIACRLEKKEG-GAGVRLYIMTLGVLAPYRRIGIGSKLLKKTLEQCEQDPLIVEVYLHVQTNNEAAIEFYKKFDFEITETIKNYYKHIEPPDCYVLSKNL 159          
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Match: A0A225WLU1_9STRA (Acetyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLU1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.780e-34
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   13 VDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLLRRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRIDPPDCHILRKKL 333
            V G   GA+CCR EP E   G +R YIMTLGVL T+RR GIG++LL  V+A       V +VYLHVQTSN  A++FY+ HGF++ + + +YYKR++PPDC++LR++L
Sbjct:   51 VGGFAVGAICCRREPVEELEGVERTYIMTLGVLETYRRAGIGTRLLEGVIAQ-SIQDGVVQVYLHVQTSNTAALRFYRSHGFEVTQILRDYYKRLEPPDCYVLRRQL 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1930.5343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFX0_9PHAE3.940e-3978.05N-acetyltransferase domain-containing protein n=1 ... [more]
D8LRT1_ECTSI4.690e-3776.54N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2CI27_9STRA2.240e-3655.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U4V3F5_HEMAN3.770e-3651.33Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
K3WS71_GLOUD1.590e-3555.56N-acetyltransferase domain-containing protein n=1 ... [more]
A0A329SCP1_9STRA8.410e-3557.41N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S2USK3_9STRA1.240e-3456.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A9S6R5_PHYPA3.560e-3451.85Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A176VWJ3_MARPO3.660e-3456.36N-acetyltransferase domain-containing protein n=2 ... [more]
A0A225WLU1_9STRA3.780e-3453.27Acetyltransferase n=1 Tax=Phytophthora megakarya T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1930contigH-elongata_contig1930:13678..14295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue7.5e-29
Seed eggNOG ortholog2880.D8LRT1
KEGG koko:K20793
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004402,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010485,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0022402,GO:0031365,GO:0034085,GO:0034087,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048285,GO:0051276,GO:0051604,GO:0052858,GO:0061733,GO:0070601,GO:0071704,GO:0071840,GO:0071962,GO:0098813,GO:0140014,GO:1901564,GO:1903047
EggNOG free text desc.peptide alpha-N-acetyltransferase activity
EggNOG OGsCOG0456@1,KOG3138@2759
EC2.3.1.258
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-08_002320.1
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.9743757-CDS-H-elongata_contig1930:13677..137791622930099.9743757-CDS-H-elongata_contig1930:13677..13779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 13678..13779 -
1691679279.89978-CDS-H-elongata_contig1930:13677..137791691679279.89978-CDS-H-elongata_contig1930:13677..13779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 13678..13779 -
1622930099.993757-CDS-H-elongata_contig1930:14049..142951622930099.993757-CDS-H-elongata_contig1930:14049..14295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 14050..14295 -
1691679279.9121957-CDS-H-elongata_contig1930:14049..142951691679279.9121957-CDS-H-elongata_contig1930:14049..14295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 14050..14295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1930.5343.1prot_H-elongata_contig1930.5343.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1930 13678..14295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1930.5343.1

>prot_H-elongata_contig1930.5343.1 ID=prot_H-elongata_contig1930.5343.1|Name=mRNA_H-elongata_contig1930.5343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
FAVYVDGVVSGAVCCRIEPSEPPGGHDRLYIMTLGVLATWRRRGIGSQLL
RRVLANLEHHPSVEEVYLHVQTSNEEAVKFYQVHGFDIAETIANYYKRID
PPDCHILRKKLHREG*
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mRNA from alignment at H-elongata_contig1930:13678..14295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1930.5343.1 ID=mRNA_H-elongata_contig1930.5343.1|Name=mRNA_H-elongata_contig1930.5343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig1930:13678..14295- (Himanthalia elongata Himel1 dioecious)
TTTGCAGTTTATGTGGATGGAGTGGTTTCTGGTGCGGTATGCTGCCGAAT CGAGCCCTCAGAGCCACCGGGAGGACATGACCGACTGTATATCATGACAT TGGGAGTACTGGCCACGTGGCGACGGCGCGGCATTGGTAGTCAACTTCTG CGTCGCGTGTTGGCTAATTTGGAACATCACCCTTCAGTCGAAGAAGTTTA TTTACACGTTCAGACCAGCAACGAAGAGGCTGTCAAATTTTATCAGGTAA GCGCTTGCTAACTTCTGCTTGCTTTCGCCAACTCTCTGCTGCTGCTGCTG CTGTCCGTCGTTTGACCTGGCGATGTAAGCTGAAGACGCGCAAGCTTGTA ACTTATCACATATTCTTGAAGTGAATGAAATATTCGTACCAAGTACTATA ATATTTAGTTCTTAAAAGAACCTCGGGACTACGCTACTTCTAGATTGCTT GACTTAGTTCTTAGGTTATTTTAACGACTCACCGAACGCCCGCCCTTCCT CCACCTAACCATGCAGGTGCATGGGTTCGATATCGCAGAAACGATTGCTA ATTACTACAAGCGCATCGACCCTCCGGATTGCCACATCTTGAGAAAAAAA CTACACCGAGAAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1930:13678..14295-

>mRNA_H-elongata_contig1930.5343.1 ID=mRNA_H-elongata_contig1930.5343.1|Name=mRNA_H-elongata_contig1930.5343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig1930:13678..14295- (Himanthalia elongata Himel1 dioecious)
TTTGCAGTTTATGTGGATGGAGTGGTTTCTGGTGCGGTATGCTGCCGAAT
CGAGCCCTCAGAGCCACCGGGAGGACATGACCGACTGTATATCATGACAT
TGGGAGTACTGGCCACGTGGCGACGGCGCGGCATTGGTAGTCAACTTCTG
CGTCGCGTGTTGGCTAATTTGGAACATCACCCTTCAGTCGAAGAAGTTTA
TTTACACGTTCAGACCAGCAACGAAGAGGCTGTCAAATTTTATCAGTTTG
CAGTTTATGTGGATGGAGTGGTTTCTGGTGCGGTATGCTGCCGAATCGAG
CCCTCAGAGCCACCGGGAGGACATGACCGACTGTATATCATGACATTGGG
AGTACTGGCCACGTGGCGACGGCGCGGCATTGGTAGTCAACTTCTGCGTC
GCGTGTTGGCTAATTTGGAACATCACCCTTCAGTCGAAGAAGTTTATTTA
CACGTTCAGACCAGCAACGAAGAGGCTGTCAAATTTTATCAGGTGCATGG
GTTCGATATCGCAGAAACGATTGCTAATTACTACAAGCGCATCGACCCTC
CGGATTGCCACATCTTGAGAAAAAAACTACACCGAGAAGGGTGAGTGCAT
GGGTTCGATATCGCAGAAACGATTGCTAATTACTACAAGCGCATCGACCC
TCCGGATTGCCACATCTTGAGAAAAAAACTACACCGAGAAGGGTGA
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